Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCATTTGTACCTCTCAAATGACCAAAAGAAATGGCAACTTCCTTTCTTGGAGACCTACAATTATGATCATTCATCTTAATGGTAGATTAGAAGAGTTCAACCAACCAATTATTGCATGCCACGTACTCTCTCAACACACAAATTGTTTTCTTGCAAGTTCGGAGTCAATGTACGTTGATTCAATTGCTCCTCCTATTCCATATGATGAAGAACTCGAACTTGGTCAGATATACTTTCTCTTACCACTTTCTCAAGCCCATAAAGTCCTTTCTTTAGAGGACTTATGTGGGTTAGCTATTAAGGCTAGTATAGCACTTGGGTTCACTAATATCAAAAGAAGTCCATCTAATGTTGCCAAAATAGTTGCTCAAGCTCGTAGCTCGTGTCGGGTTCTAAGTGGGTTTGATGCCATTGGCGCGCTTAACCCTCAGGCACGCCGAGGTAGCCGGAGAGTTGGGTTTTAG ATGGGCATTTGTACCTCTCAAATGACCAAAAGAAATGGCAACTTCCTTTCTTGGAGACCTACAATTATGATCATTCATCTTAATGGTAGATTAGAAGAGTTCAACCAACCAATTATTGCATGCCACGTACTCTCTCAACACACAAATTGTTTTCTTGCAAGTTCGGAGTCAATGTACGTTGATTCAATTGCTCCTCCTATTCCATATGATGAAGAACTCGAACTTGGTCAGATATACTTTCTCTTACCACTTTCTCAAGCCCATAAAGTCCTTTCTTTAGAGGACTTATGTGGGTTAGCTATTAAGGCTAGTATAGCACTTGGGTTCACTAATATCAAAAGAAGTCCATCTAATGTTGCCAAAATAGTTGCTCAAGCTCGTAGCTCGTGTCGGGTTCTAAGTGGGTTTGATGCCATTGGCGCGCTTAACCCTCAGGCACGCCGAGGTAGCCGGAGAGTTGGGTTTTAG ATGGGCATTTGTACCTCTCAAATGACCAAAAGAAATGGCAACTTCCTTTCTTGGAGACCTACAATTATGATCATTCATCTTAATGGTAGATTAGAAGAGTTCAACCAACCAATTATTGCATGCCACGTACTCTCTCAACACACAAATTGTTTTCTTGCAAGTTCGGAGTCAATGTACGTTGATTCAATTGCTCCTCCTATTCCATATGATGAAGAACTCGAACTTGGTCAGATATACTTTCTCTTACCACTTTCTCAAGCCCATAAAGTCCTTTCTTTAGAGGACTTATGTGGGTTAGCTATTAAGGCTAGTATAGCACTTGGGTTCACTAATATCAAAAGAAGTCCATCTAATGTTGCCAAAATAGTTGCTCAAGCTCGTAGCTCGTGTCGGGTTCTAAGTGGGTTTGATGCCATTGGCGCGCTTAACCCTCAGGCACGCCGAGGTAGCCGGAGAGTTGGGTTTTAG MGICTSQMTKRNGNFLSWRPTIMIIHLNGRLEEFNQPIIACHVLSQHTNCFLASSESMYVDSIAPPIPYDEELELGQIYFLLPLSQAHKVLSLEDLCGLAIKASIALGFTNIKRSPSNVAKIVAQARSSCRVLSGFDAIGALNPQARRGSRRVGF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11517.1 vs. NCBI nr
Match: gi|731358834|ref|XP_010690961.1| (PREDICTED: uncharacterized protein LOC104904416 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 237.3 bits (604), Expect = 1.800e-59 Identity = 122/155 (78.71%), Postives = 137/155 (88.39%), Query Frame = 1
BLAST of Spo11517.1 vs. NCBI nr
Match: gi|764547347|ref|XP_011459647.1| (PREDICTED: uncharacterized protein LOC105350018 [Fragaria vesca subsp. vesca]) HSP 1 Score: 138.3 bits (347), Expect = 1.200e-29 Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 1
BLAST of Spo11517.1 vs. NCBI nr
Match: gi|359475255|ref|XP_003631624.1| (PREDICTED: uncharacterized protein LOC100855234 [Vitis vinifera]) HSP 1 Score: 126.7 bits (317), Expect = 3.500e-26 Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 1
BLAST of Spo11517.1 vs. NCBI nr
Match: gi|645262449|ref|XP_008236767.1| (PREDICTED: uncharacterized protein LOC103335530 [Prunus mume]) HSP 1 Score: 125.6 bits (314), Expect = 7.800e-26 Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1
BLAST of Spo11517.1 vs. NCBI nr
Match: gi|567860990|ref|XP_006423149.1| (hypothetical protein CICLE_v10029512mg [Citrus clementina]) HSP 1 Score: 125.6 bits (314), Expect = 7.800e-26 Identity = 69/156 (44.23%), Postives = 94/156 (60.26%), Query Frame = 1
BLAST of Spo11517.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHT2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g218100 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.300e-59 Identity = 122/155 (78.71%), Postives = 137/155 (88.39%), Query Frame = 1
BLAST of Spo11517.1 vs. UniProtKB/TrEMBL
Match: F6HQJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01950 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.400e-26 Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 1
BLAST of Spo11517.1 vs. UniProtKB/TrEMBL
Match: V4UAU4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029512mg PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 5.400e-26 Identity = 69/156 (44.23%), Postives = 94/156 (60.26%), Query Frame = 1
BLAST of Spo11517.1 vs. UniProtKB/TrEMBL
Match: M5VH24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020442mg PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 7.100e-26 Identity = 71/151 (47.02%), Postives = 97/151 (64.24%), Query Frame = 1
BLAST of Spo11517.1 vs. UniProtKB/TrEMBL
Match: A0A061E4R2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006313 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 9.200e-26 Identity = 73/164 (44.51%), Postives = 98/164 (59.76%), Query Frame = 1
BLAST of Spo11517.1 vs. TAIR (Arabidopsis)
Match: AT2G23690.1 (unknown protein) HSP 1 Score: 82.4 bits (202), Expect = 2.700e-16 Identity = 56/159 (35.22%), Postives = 81/159 (50.94%), Query Frame = 1
BLAST of Spo11517.1 vs. TAIR (Arabidopsis)
Match: AT1G76600.1 (unknown protein) HSP 1 Score: 79.3 bits (194), Expect = 2.300e-15 Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 1
BLAST of Spo11517.1 vs. TAIR (Arabidopsis)
Match: AT1G21010.1 (unknown protein) HSP 1 Score: 77.8 bits (190), Expect = 6.600e-15 Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1
BLAST of Spo11517.1 vs. TAIR (Arabidopsis)
Match: AT4G37240.1 (unknown protein) HSP 1 Score: 74.7 bits (182), Expect = 5.600e-14 Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 1
BLAST of Spo11517.1 vs. TAIR (Arabidopsis)
Match: AT5G66580.1 (unknown protein) HSP 1 Score: 66.2 bits (160), Expect = 2.000e-11 Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11517.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11517.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11517.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo11517.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|