Spo11478 (gene) | SpinachBase

Overview


Name	Spo11478
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Protein FAR1-RELATED SEQUENCE 6
Location	chr5 : 36899350 .. 36904847 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATCCATGGAAACGAATGGGGAAGGAAGGAGGCGGAGGCACCGAGAACAGTCTTTGGTATCTCATAGGGTTTTTTCTTCTTTTTTCTCTTTCTCTCTCTAAGTTTCTCTCTCATCTTTTGTGCATTGTATATGTATGTATTTGTTACCAAAATATAAAAACAAATTTTATATAGTATTCCTCATGTATAGAATGACATTTTTTTTAGGAAAATAGAATTAAATATTTTTTTGGGTAAAAAGGTACTCCCTCCGTCCCGGAATACTCGATCCGGTTTGACCGGCACAGAGTTTAAGGGACTTGAATTGACTTATTTAATTTAATAGGTAGTAGTTGATAGTGGGTTATTATTTTAATGTAGTTAGTGGGAAATGTGTGAAGGGGTGGGGTTGGGGGAGAGTAGGGGTTGAATTTTTAATTATTTTTTGTATGGAGTAGGGGTAGGTGGGTTAATAGGGGTGGAGTGAGAAATAATATAATATTGTTAGAATATTTCCATTTTTAGAAACAGGTCAAGTATTAAGGGACGGCCCGATAAGGAAAACAGGTCAAGTATTCCGGGACGGAGGGAGTAACAAAATAATTTACAATTGTTATAAATATATTGTATTGTGGATGCCCATTATACCCCTGACATCTGTATCCTATATAATACATGTATATGTACATATTATATTGATGAGAATAAGATGATAACCGCCTGTTTTCTCTCTTCCTCTCTCCCCCTTTCTCTCGTTATCGGTTAGTATCACTACGTATTAATTATTATATTATTTTGTGTTTACTCGTCTGTAGTTTTATGAACTGCGATGATAACCGTCAATTTCGCCATGTTTATTTGATTAACAGTTTGTGATAATTTTCCATGTCTATTGTCGTACTGTAACGTAGTTTTGATTTTCCAAGTTTATTGCACTAATTTTCATGCGCCTGATTGAGAAAAGAGTTTTGTTTTTATACTGGAGTTTTGATTGACGGAGATAGATAGGGGAGTCCATACACATAAAATGGTTTTATGTTGACTGGACTTAGAATGCAATGGGATTGACATGTCAGATTGTACATTTTGGTTTTAGGTGGGAAATGGTATATTTTAGGAGGGAAAGGTTTTCATTTTTTCCGCCATTTTGCTCTTCACAGCGGGTATTCTAGCGCCCAAAAATCCTCTGAAATTTTCCCCGCCTAAATTTCCCAAAAAAAAAAAAAAAAAAAAAAANTTTTCCCTTCAAATAACTAACTGAGCTATAGTTCATTTATGACTATAGGGAGTCCATACACATAAAATGGTTTTATGTTGACTGGACTTAGAATGCAATGGGTGATTGACATGTCAGATTGTACATTTTGGTTTTAGGTGGGAAATGGTATATTTTAGGAGGGAAAGGTTTTCATTTTTTCCGCCATTTTGCTCTTCACAGCGGGCATTCTAGCGCCCAAAAATCCTNATTTTAGGAGGGAAAGGTTTTCATTTTTCCCGCCATTTTGCTCTTCACAGCGGGCATTCTAGCGCCCAAAAATCCTCTGAAATTTTCCCCGCCTAAATTTCCCAAAAAAAAATAAAAAAAATAAAATAAATAAAAAAACGGAAAGTGAAGCTGAGCATTAACTATCCACAGAAGTTTATCACTTACCAAGCTTGTTGTAAGAGGTGAATATTCATGAACTCCATTTCTACTTTTCATGTAATACAAAGCAATTACTAAGTAATCTTTTAACTTTGTTATTTACAAATTTGTTCTCCTTTTATGTTTATTGTTAGTAAATTTTTTTCCAGAACCAAATCCTTATTAATGTATTGTGATTTTATTACTGTCGTATAATCTATGAACCAATAATTTATTAAGCGGAATGCCCGATGTTGTTGATTGAAGTTGACGGAGAAACCTATGTACCTTGTGTGTATAAGATTTTATTTTCGTGGATAAGATATGTATGTTATCCATTTTAATATAATTAATTGTATATGTTTAATTAAAAACAAAATGTTATTTTATTATATCAATTTTTTATTTGTTTATTTTCATTTAATTTGAAAATTTTCGATAACTATTTATTTGTATAAAAGCATTGTATGATTTAATTTAATTTGTATTAATTTATTATTTGTTTAATTTCATTTGTTATGCCAGAGTACAATGGTTAGTATAGACCTTAATGTTGAACCTGACGTCGGAGAAGGAACTATTGTGAATTCAACTACGCCAACCACCCCTTGTCCAGGAATGTGTTTTGAGTCCGGTAGTGAGTTTTTTGAATTTTGCAATCGTTATGCGTACATGACTGGTTTTGAGTTGTTTGTAATATATAGTAAGATTAAGAAGGAGTACAAGGATAAGGGTGTTAGTAGAGTTGGTATTGGTGAGCTTGAGGCTAGGCCTCATACGATGGAGATGGTCAGATTAAAGTGTAAGAAAGGTGGCGTGAAATCTAGTGTCGGGTCTAATGTTAGTGGTTGCAACGTTTTTTTTTATGGTAAAGAGAAAAACGGAGAGTTTGTAGTTATTAGTTGTGATTTGGTGCATAATCATCCTCTATTGCCCGAAAATAGTAGGATGATGGTTAACTATAGAAGCATCGGTAGTGCTACCTTTGATAGGGTAATGATAAATGAACGTGCCGGTGTTAGCATTAGTAGAAACTTTGGCACGCAATTGATTGAAAAGGGTGGTTTTGATAATATGACGTTCAACAAAATAGATTTGAGGAACGCCATAGCTGTTGAACGTCGTAAAACCATGTTTGAGAAAGGGGATGTTGTTGCACTTGAAGAGTATTTTAAAGCACAACGAGATCTGAATGGCGATTTTTATAGTTCTATAGAACGAGATGAAGAGGGTATTTTAAAGAACGCATTCTGGTCCGACGCGCGTAGTAGAGGAAGTTGCAAATATTTCGGGGATGTGATCAGTTTCGACACCACCTTTTCTAGCAACATGTATGTTATTTTATTATTTATTTGTTTCTATTACATAACTGTGGTTGTTAGTTTTATGGGTTATTTAGTTTAGTCTTCTTGAAATTGAATTAATTGTGCATGTGGTAGTGCATGTTATTGTAATGTTATTTTGTATGCATGCGATAATAGTAAACTTGATATTGTTTTTCCATCCTACTTCACACAGTAATAATTACTGAATTAACTAGGTATCGTATGCCATTTGCCCCGTTTGTTGGCGTCAACCACCATGGGAGGTCAATTGTTTTTGCTGCCGCTTTAATCTCACACGAAGACACTCCGAGTTTTGTTTGGGTCTTTGAGGAATGGCTTAAGTGCATGGGAAAGCCTCCTAAGGGAATTATAACCGATCAAGACAAGGCAATAGGTAGAGCGATAAGCATAGTTTTCCCTGGGGTTCCTCATAGGCTTTGTTTGTGGCACATGCTACAAAATGCCTCTCGCAATCTCGGCAAGCTCGATGAATGGAAAAGCATCGACACGCTAGTTAGAACCGCCGTTCATGACATGCTCGATCCCGAGGAGTTTGATGAGGCTTGGTGTCTTGTGATGGACAAATATAATCAACGTCAGGGTTGGATGCTGGATGCGTATGATAAACGTCGGCAATGGGCACCAGCTTACAATAGAGGTAAATTTTGGGCTGGAATGTCCTCTACGCAACGAAGTGAAGGTATGAATCGCACATTCAAAATTCATGTAAACTTAGATTGTGGATTAACGCAGTTTATTAAAAACTACGAGTTCTGTATGAAGATAAAGGCAGAGGAAGAGTCGAAGGATAATCATAATAGTATAGATAAGCCTCCTAAACTTGATGTGGACAAGAGTGTGTTAGCTGAGTATGTGTTGCATATTGTATACACCAATGAGATGTTTGTTGCGGTTGTGAATGAGCGTAAAGGTTTAACCCATACGAACGTAACCAAAACCAATGCAATAGGGTCACTTGTATTGTATAGAGCAGATGAGAAACTGACCTCCCCTCATTGGAGGAAAAGGTTCAAAAGTTACGTTGTTAAAGTAGATAAGGTTAAGGGGGAAGTCAGTTGCTCATGTCAGTTGTTTGAATTTAGGGGTATTTTATGTAGGCACATACTCAAAGCAATGGATGTGGAGGATTTCCAATTTATACCGGAGAAATATATACTAGATAGATGGACGAAGCAAGTTAGTTCGTATGAGAGTGTTAGGGTTTCATACTATGATCCTGAAGAAACCGCAACGTTAGCCAAAGCTAAAGAGCTTTCCCAAAGGCATAATTATTTGAAAGAATTAGCCATGCGCAATGAAGCTACCTACAAGTTATATACGGAAGGCACTGATAGTCTTAGGCTGAAAATGGAGGATGCAGTCGGTATAAGAAAGACTGGTGAAGGAGGTGATCAGTCTATTTGTTGGTGGGATCCCGAAGCACGTAACGTATTTGGTCGTCGTAGGCTACGACCGAGGGAGTGTAATGAACGTGCCCTAAAGAGGGCATCTCAACCTGCTGAGGATGGTGCCATTAAAACCCCCATTGATAAGAGGCATGTTGGGCGGTCTAAGAAAGGACCGTATTCAATTTACGACAAATCAAAGAAGAACCAAGCATGTAATCACGCTGAGATTGCAGCGAACGAGGTAATGTAAAATTGTTTGTTTTTTTTTTATTTGAATGTTTATTTTTTATTACGACTTATAATTTATACAAGTTACGGTAATTAATTGTAGGAACTCATAAGGTCTACTTATGGCCATATTCCTAGCTACCGGGCAAGGCAAGAGCATGCGAACAACGTTCAGGATGCCCGTTTACATTCCTCATCCATTGGACCTGTTTTAGAAGACATTCCTGAATCATCTCAAATAAATTTGTCCGAAGATATATCTCAAACTTTTGATTATGATACCTTTGAATGGAACACAAGACTTGGAGGAAGATTGACCATGTAGTTGTTTTTATCAATGTTATAATGAATTGGGTACCGTATTATCTGTATGGAATTTTTGCGCTAGATTGTCATTTGAAGTTTGTTTATTGGTACTTTTTAAATTTAATCTAATTTTTAACTTTAAATAAACGCAAAGCGTTGAACTGAATTTGACATCAAAATAGTATGGGGAAAAGCTACAAAAAAAAGTGTGCGGGTTAGGGGGGGGGGGGGGGGGAAGGTTAATATGCATAATGCCGCTGCTACCAGGTATCGAACCTCAGACCAAAGGGGAAGCAATGCTCTATGTTAAGGCAGTAACCATTGTGACGTGAGGCCGAAGCCATTGCCTCATTTGCGTCTAGAATATACTAATAGTTTGACTTAATGCTCCACGTGCTGATAAAAGTAATTAGAATACCGTCTTTAATTACAGTTCGTTGACACGCATACAACGATTAATTAATTAAATTAAATTTACTACATTGGAATATTTTTACATTTATTTTGTTCACATTTGTTGTTGAAAATGTTGGTGTCTTTATTTGTGGTATTTTGTTAGTAATTTTCAAATTGTAGAAATAATTGTTTAAGTTTCTGTGTAGTTTGTATGAGTTTGAGTGA

mRNA sequence

ATGGCAGATCCATGGAAACGAATGGGGAAGGAAGGAGGCGGAGGCACCGAGAACAAACGAGATGAAGAGGGTATTTTAAAGAACGCATTCTGGTCCGACGCGCGTAGTAGAGGAAGTTGCAAATATTTCGGGGATGTGATCAGTTTCGACACCACCTTTTCTAGCAACATGTATGAACTCATAAGGTCTACTTATGGCCATATTCCTAGCTACCGGGCAAGGCAAGAGCATGCGAACAACGTTCAGGATGCCCGTTTACATTCCTCATCCATTGGACCTGTTTTAGAAGACATTCCTGAATCATCTCAAATAAATTTGTCCGAAGATATATCTCAAACTTTTGATTATGATACCTTTGAATGGAACACAAGACTTGGAGGAAGATTGACCATTTTGTATGAGTTTGAGTGA

Coding sequence (CDS)

ATGGCAGATCCATGGAAACGAATGGGGAAGGAAGGAGGCGGAGGCACCGAGAACAAACGAGATGAAGAGGGTATTTTAAAGAACGCATTCTGGTCCGACGCGCGTAGTAGAGGAAGTTGCAAATATTTCGGGGATGTGATCAGTTTCGACACCACCTTTTCTAGCAACATGTATGAACTCATAAGGTCTACTTATGGCCATATTCCTAGCTACCGGGCAAGGCAAGAGCATGCGAACAACGTTCAGGATGCCCGTTTACATTCCTCATCCATTGGACCTGTTTTAGAAGACATTCCTGAATCATCTCAAATAAATTTGTCCGAAGATATATCTCAAACTTTTGATTATGATACCTTTGAATGGAACACAAGACTTGGAGGAAGATTGACCATTTTGTATGAGTTTGAGTGA

Protein sequence

MADPWKRMGKEGGGGTENKRDEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTYGHIPSYRARQEHANNVQDARLHSSSIGPVLEDIPESSQINLSEDISQTFDYDTFEWNTRLGGRLTILYEFE

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11478.1	Spo11478.1	mRNA

Homology

[Close]

BLAST of Spo11478.1 vs. NCBI nr
Match: gi|629087486|gb|KCW53843.1| (hypothetical protein EUGRSUZ_J03078 [Eucalyptus grandis])

HSP 1 Score: 62.8 bits (151), Expect = 5.400e-7
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1


		  
Query: 22  EEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYEL 61
           +EG L+N FW+DARSR +C YFGDVI FDTTF SN YE+
Sbjct: 238 DEGNLRNVFWADARSRAACVYFGDVIYFDTTFLSNKYEV 276

[Close]

BLAST of Spo11478.1 vs. NCBI nr
Match: gi|702484427|ref|XP_010033975.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Eucalyptus grandis])

HSP 1 Score: 62.8 bits (151), Expect = 5.400e-7
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1


		  
Query: 22  EEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYEL 61
           +EG L+N FW+DARSR +C YFGDVI FDTTF SN YE+
Sbjct: 238 DEGNLRNVFWADARSRAACVYFGDVIYFDTTFLSNKYEV 276

[Close]

BLAST of Spo11478.1 vs. NCBI nr
Match: gi|1021476119|ref|XP_016169570.1| (PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Arachis ipaensis])

HSP 1 Score: 62.0 bits (149), Expect = 9.300e-7
Identity = 23/40 (57.50%), Postives = 35/40 (87.50%), Query Frame = 1


		  
Query: 26  LKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           +K+AFW+DARSR +C+YFGDV+SFDTT+++N Y L+  ++
Sbjct: 173 IKHAFWADARSRAACEYFGDVVSFDTTYNTNRYNLVLGSF 212

[Close]

BLAST of Spo11478.1 vs. NCBI nr
Match: gi|1021574824|ref|XP_016178580.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Arachis ipaensis])

HSP 1 Score: 60.8 bits (146), Expect = 2.100e-6
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1


		  
Query: 17  ENKRDEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           E + +++  ++ AFWSDARSR +C+YFGDVISFDTT+++N Y L+  ++
Sbjct: 188 ELELEDDQSIQLAFWSDARSRAACEYFGDVISFDTTYNTNRYNLVCGSF 236

[Close]

BLAST of Spo11478.1 vs. NCBI nr
Match: gi|1021535017|ref|XP_016164525.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Arachis ipaensis])

HSP 1 Score: 60.5 bits (145), Expect = 2.700e-6
Identity = 25/49 (51.02%), Postives = 40/49 (81.63%), Query Frame = 1


		  
Query: 17  ENKRDEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           E++ + +  +K AFW+DARSR +C+YFGDVISF+TT+++NMY L+  ++
Sbjct: 78  EHELEVDQSIKIAFWADARSRVACEYFGDVISFNTTYNTNMYNLVFDSF 126

[Close]

BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
Match: A0A059AJ32_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03078 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.800e-7
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1


		  
Query: 22  EEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYEL 61
           +EG L+N FW+DARSR +C YFGDVI FDTTF SN YE+
Sbjct: 238 DEGNLRNVFWADARSRAACVYFGDVIYFDTTFLSNKYEV 276

[Close]

BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
Match: A0A0L9VEU4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g186800 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.200e-6
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1


		  
Query: 21  DEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           ++EG L+NAFW DARSR +C YFGDVI FD ++ SN YE+   T+
Sbjct: 235 NDEGHLRNAFWVDARSRAACGYFGDVIYFDNSYLSNKYEIQLVTF 279

[Close]

BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
Match: V7BNJ0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G132600g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.200e-6
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1


		  
Query: 21  DEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           ++EG L+NAFW DARSR +C YFGDVI FD T+ SN +E+   T+
Sbjct: 236 NDEGHLRNAFWVDARSRAACGYFGDVIYFDNTYLSNKFEIQLVTF 280

[Close]

BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
Match: I1L0A1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G019300 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.200e-6
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1


		  
Query: 21  DEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           +++G L+NAFW DARSR SC YFGDVI FD T+ SN +E+   T+
Sbjct: 239 NDDGHLRNAFWVDARSRASCGYFGDVIYFDNTYLSNKFEIPLVTF 283

[Close]

BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
Match: A0A0B2S917_GLYSO (Protein FAR1-RELATED SEQUENCE 6 OS=Glycine soja GN=glysoja_015104 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.200e-6
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1


		  
Query: 21  DEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           +++G L+NAFW DARSR SC YFGDVI FD T+ SN +E+   T+
Sbjct: 188 NDDGHLRNAFWVDARSRASCGYFGDVIYFDNTYLSNKFEIPLVTF 232

[Close]

BLAST of Spo11478.1 vs. ExPASy Swiss-Prot
Match: FRS8_ARATH (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.800e-6
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1


		  
Query: 22  EEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYEL 61
           ++G L+N FW DAR+R +  +FGDV+ FDTT  SN YEL
Sbjct: 297 DDGSLRNVFWIDARARAAYSHFGDVLLFDTTCLSNAYEL 335

[Close]

BLAST of Spo11478.1 vs. TAIR (Arabidopsis)
Match: AT1G80010.1 (FAR1-related sequence 8)

HSP 1 Score: 51.6 bits (122), Expect = 4.400e-7
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1


		  
Query: 22  EEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYEL 61
           ++G L+N FW DAR+R +  +FGDV+ FDTT  SN YEL
Sbjct: 297 DDGSLRNVFWIDARARAAYSHFGDVLLFDTTCLSNAYEL 335

[Close]

BLAST of Spo11478.1 vs. TAIR (Arabidopsis)
Match: AT1G52520.1 (FAR1-related sequence 6)

HSP 1 Score: 50.1 bits (118), Expect = 1.300e-6
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1


		  
Query: 21  DEEGILKNAFWSDARSRGSCKYFGDVISFDTTFSSNMYELIRSTY 66
           ++EG L+N FW+DA S+ SC YFGDVI  D+++ S  +E+   T+
Sbjct: 272 NDEGQLRNVFWADAFSKVSCSYFGDVIFIDSSYISGKFEIPLVTF 316

The following BLAST results are available for this feature:

BLAST of Spo11478.1 vs. NCBI nr
BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
BLAST of Spo11478.1 vs. ExPASy Swiss-Prot
BLAST of Spo11478.1 vs. TAIR (Arabidopsis)

BLAST of Spo11478.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|629087486\|gb\|KCW53843.1\|	5.4e-7	69.2	hypothetical protein EUGRSUZ_J...	[more]
gi\|702484427\|ref\|XP_010033975.1\|	5.4e-7	69.2	PREDICTED: protein FAR1-RELATE...	[more]
gi\|1021476119\|ref\|XP_016169570.1\|	9.3e-7	57.5	PREDICTED: protein FAR-RED IMP...	[more]
gi\|1021574824\|ref\|XP_016178580.1\|	2.1e-6	51.0	PREDICTED: protein FAR1-RELATE...	[more]
gi\|1021535017\|ref\|XP_016164525.1\|	2.7e-6	51.0	PREDICTED: protein FAR1-RELATE...	[more]

BLAST of Spo11478.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A059AJ32_EUCGR	3.8e-7	69.2	Uncharacterized protein OS=Euc...	[more]
A0A0L9VEU4_PHAAN	3.2e-6	57.7	Uncharacterized protein OS=Pha...	[more]
V7BNJ0_PHAVU	3.2e-6	57.7	Uncharacterized protein OS=Pha...	[more]
I1L0A1_SOYBN	3.2e-6	57.7	Uncharacterized protein OS=Gly...	[more]
A0A0B2S917_GLYSO	3.2e-6	57.7	Protein FAR1-RELATED SEQUENCE ...	[more]

BLAST of Spo11478.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
FRS8_ARATH	7.8e-6	56.4	Protein FAR1-RELATED SEQUENCE ...	[more]

BLAST of Spo11478.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G80010.1	4.4e-7	56.4	FAR1-related sequence 8	[more]
AT1G52520.1	1.3e-6	46.6	FAR1-related sequence 6	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
No results

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0016126	sterol biosynthetic process
cellular_component	GO:0010007	magnesium chelatase complex
molecular_function	GO:0016851	magnesium chelatase activity
molecular_function	GO:0046422	violaxanthin de-epoxidase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15389	0.71	Barchart \| Table
Spo09384	0.67	Barchart \| Table
Spo05265	0.67	Barchart \| Table
Spo17668	0.67	Barchart \| Table
Spo18336	0.66	Barchart \| Table
Spo24797	0.66	Barchart \| Table
Spo26975	0.66	Barchart \| Table