Spo11438 (gene) | SpinachBase

Overview


Name	Spo11438
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Cytochrome b-c1 complex subunit 8
Location	SpoScf_00676 : 316716 .. 316934 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGATTCCGGTGAAGATGAAGATGGTGCAGTACGCTTTGTCTCCGTACCAACAAAAGGTGATGCCTGGATTATGGAAAGATCTTCCCGGAAAACTTAGCCACAAGGTGACGGAGAATTATATCAGCACCACCCTTTTGCTCGGACCTCTCGTCGGAGTGTACTCCTATGTTCAGTGGTACCTGGAGAAGGAGAAACTGTCTCATCGCTTTTAG

mRNA sequence

ATGGGTAAGATTCCGGTGAAGATGAAGATGGTGCAGTACGCTTTGTCTCCGTACCAACAAAAGGTGATGCCTGGATTATGGAAAGATCTTCCCGGAAAACTTAGCCACAAGGTGACGGAGAATTATATCAGCACCACCCTTTTGCTCGGACCTCTCGTCGGAGTGTACTCCTATGTTCAGTGGTACCTGGAGAAGGAGAAACTGTCTCATCGCTTTTAG

Coding sequence (CDS)

ATGGGTAAGATTCCGGTGAAGATGAAGATGGTGCAGTACGCTTTGTCTCCGTACCAACAAAAGGTGATGCCTGGATTATGGAAAGATCTTCCCGGAAAACTTAGCCACAAGGTGACGGAGAATTATATCAGCACCACCCTTTTGCTCGGACCTCTCGTCGGAGTGTACTCCTATGTTCAGTGGTACCTGGAGAAGGAGAAACTGTCTCATCGCTTTTAG

Protein sequence

MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQWYLEKEKLSHRF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11438.1	Spo11438.1	mRNA

Homology

[Close]

BLAST of Spo11438.1 vs. NCBI nr
Match: gi|902195749|gb|KNA12943.1| (hypothetical protein SOVF_121450 [Spinacia oleracea])

HSP 1 Score: 151.8 bits (382), Expect = 4.700e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ
Sbjct: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
          WYLEKEKLSHRF
Sbjct: 61 WYLEKEKLSHRF 72

[Close]

BLAST of Spo11438.1 vs. NCBI nr
Match: gi|731360779|ref|XP_010692002.1| (PREDICTED: cytochrome b-c1 complex subunit 8-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 136.0 bits (341), Expect = 2.700e-29
Identity = 65/72 (90.28%), Postives = 66/72 (91.67%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGKIPVKMK VQYALSPYQQKVMPGLWKDLPGKLSHKVTEN+IS TLLL PLVGVYSYV 
Sbjct: 1  MGKIPVKMKAVQYALSPYQQKVMPGLWKDLPGKLSHKVTENWISATLLLTPLVGVYSYVG 60

Query: 61 WYLEKEKLSHRF 73
          WY EKEKL HRF
Sbjct: 61 WYQEKEKLEHRF 72

[Close]

BLAST of Spo11438.1 vs. NCBI nr
Match: gi|747067789|ref|XP_011080633.1| (PREDICTED: cytochrome b-c1 complex subunit 8 [Sesamum indicum])

HSP 1 Score: 125.2 bits (313), Expect = 4.700e-26
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PV+MK V YALSP+QQKVMPGLWKDLPGK+ HK++EN++S TLLLGPLVG YSYVQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKVMPGLWKDLPGKIGHKISENWLSATLLLGPLVGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
          WY EKEK+ HR+
Sbjct: 61 WYQEKEKMEHRY 72

[Close]

BLAST of Spo11438.1 vs. NCBI nr
Match: gi|672158897|ref|XP_008799194.1| (PREDICTED: cytochrome b-c1 complex subunit 8 [Phoenix dactylifera])

HSP 1 Score: 122.5 bits (306), Expect = 3.100e-25
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PV+MK V YALSP+QQKVMPGLWKDLPGK+ HKV+EN++S TLLL P+VG YSYVQ
Sbjct: 1  MGKTPVRMKAVVYALSPFQQKVMPGLWKDLPGKIHHKVSENWLSATLLLAPVVGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
          +YLEKEKL+HR+
Sbjct: 61 YYLEKEKLAHRY 72

[Close]

BLAST of Spo11438.1 vs. NCBI nr
Match: gi|565354384|ref|XP_006344090.1| (PREDICTED: cytochrome b-c1 complex subunit 8 [Solanum tuberosum])

HSP 1 Score: 122.1 bits (305), Expect = 4.000e-25
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YALSP+QQK+MPGLWKDLPGK+ HKV+EN+IS TLLLGPLVG YSYVQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
           +LEKEKL HR+
Sbjct: 61 HFLEKEKLEHRY 72

[Close]

BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0A8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083980 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.300e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ
Sbjct: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
          WYLEKEKLSHRF
Sbjct: 61 WYLEKEKLSHRF 72

[Close]

BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIQ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017370 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.900e-29
Identity = 65/72 (90.28%), Postives = 66/72 (91.67%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGKIPVKMK VQYALSPYQQKVMPGLWKDLPGKLSHKVTEN+IS TLLL PLVGVYSYV 
Sbjct: 1  MGKIPVKMKAVQYALSPYQQKVMPGLWKDLPGKLSHKVTENWISATLLLTPLVGVYSYVG 60

Query: 61 WYLEKEKLSHRF 73
          WY EKEKL HRF
Sbjct: 61 WYQEKEKLEHRF 72

[Close]

BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
Match: M1BUK8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020649 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.800e-25
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YALSP+QQK+MPGLWKDLPGK+ HKV+EN+IS TLLLGPLVG YSYVQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
           +LEKEKL HR+
Sbjct: 61 HFLEKEKLEHRY 72

[Close]

BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
Match: K4CAC3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.600e-25
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YALSP+QQK+MPGLWKDLPGK+ HKV+EN+IS TLLLGPL+G YSYVQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLIGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
           +LEKEKL HR+
Sbjct: 61 HFLEKEKLEHRY 72

[Close]

BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GWI6_SOLCH (Putative cytochrome b-c1 complex subunit 8-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.600e-25
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YALSP+QQK+MPGLWKDLPGK+ HKV+EN+IS TLLLGPL+G YSYVQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLIGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
           +LEKEKL HR+
Sbjct: 61 HFLEKEKLEHRY 72

[Close]

BLAST of Spo11438.1 vs. ExPASy Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 4.300e-27
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YA+SP+QQK+MPGLWKDLPGK+ HKV+EN+IS TLLLGPLVG YSYVQ
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 WYLEKEKLSHRF 73
           +LEKEKL HR+
Sbjct: 61 HFLEKEKLEHRY 72

[Close]

BLAST of Spo11438.1 vs. TAIR (Arabidopsis)
Match: AT5G05370.1 (Cytochrome b-c1 complex, subunit 8 protein)

HSP 1 Score: 108.2 bits (269), Expect = 2.100e-24
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YALSP+QQK+M GLWKDLP K+ HKV+EN+IST LL+ P+VG YSY Q
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 WYLEKEKLSHRF 73
          ++ E+EKL HRF
Sbjct: 61 YFKEQEKLEHRF 72

[Close]

BLAST of Spo11438.1 vs. TAIR (Arabidopsis)
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein)

HSP 1 Score: 105.1 bits (261), Expect = 1.800e-23
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


		  
Query: 1  MGKIPVKMKMVQYALSPYQQKVMPGLWKDLPGKLSHKVTENYISTTLLLGPLVGVYSYVQ 60
          MGK PVK+K V YALSP+QQK+M GLWKDLP K+ HKV+EN+IS TLL+ P+VG Y Y Q
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 WYLEKEKLSHRF 73
          ++ E+EKL HRF
Sbjct: 61 YFKEQEKLEHRF 72

The following BLAST results are available for this feature:

BLAST of Spo11438.1 vs. NCBI nr
BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
BLAST of Spo11438.1 vs. ExPASy Swiss-Prot
BLAST of Spo11438.1 vs. TAIR (Arabidopsis)

BLAST of Spo11438.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902195749\|gb\|KNA12943.1\|	4.7e-34	100.	hypothetical protein SOVF_1214...	[more]
gi\|731360779\|ref\|XP_010692002.1\|	2.7e-29	90.2	PREDICTED: cytochrome b-c1 com...	[more]
gi\|747067789\|ref\|XP_011080633.1\|	4.7e-26	76.3	PREDICTED: cytochrome b-c1 com...	[more]
gi\|672158897\|ref\|XP_008799194.1\|	3.1e-25	76.3	PREDICTED: cytochrome b-c1 com...	[more]
gi\|565354384\|ref\|XP_006344090.1\|	4.0e-25	77.7	PREDICTED: cytochrome b-c1 com...	[more]

BLAST of Spo11438.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R0A8_SPIOL	3.3e-34	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BIQ2_BETVU	1.9e-29	90.2	Uncharacterized protein OS=Bet...	[more]
M1BUK8_SOLTU	2.8e-25	77.7	Uncharacterized protein OS=Sol...	[more]
K4CAC3_SOLLC	3.6e-25	76.3	Uncharacterized protein OS=Sol...	[more]
A0A0V0GWI6_SOLCH	3.6e-25	76.3	Putative cytochrome b-c1 compl...	[more]

BLAST of Spo11438.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
QCR8_SOLTU	4.3e-27	76.3	Cytochrome b-c1 complex subuni...	[more]

BLAST of Spo11438.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G05370.1	2.1e-24	68.0	Cytochrome b-c1 complex, subun...	[more]
AT3G10860.1	1.8e-23	66.6	Cytochrome b-c1 complex, subun...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004205	Cytochrome b-c1 complex subunit 8	GENE3D	1.20.5.210		coord: 2..67 score: 1.
IPR004205	Cytochrome b-c1 complex subunit 8	unknown	SSF81508	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 4..65 score: 8.6
IPR020101	Cytochrome b-c1 complex subunit 8, plants	PRODOM	PD056240		coord: 2..72 score: 3.0
IPR020101	Cytochrome b-c1 complex subunit 8, plants	PFAM	PF10890	DUF2741	coord: 1..72 score: 5.9
None	No IPR available	PANTHER	PTHR34559	FAMILY NOT NAMED	coord: 2..72 score: 1.1
None	No IPR available	PANTHER	PTHR34559:SF1	SUBFAMILY NOT NAMED	coord: 2..72 score: 1.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006396	RNA processing
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0005840	ribosome
cellular_component	GO:0045275	respiratory chain complex III
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05998	0.70	Barchart \| Table
Spo19970	0.67	Barchart \| Table
Spo01092	0.65	Barchart \| Table