Spo11348 (gene) | SpinachBase

Overview


Name	Spo11348
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Phosphatase methylesterase 1
Location	SpoScf_01172 : 53268 .. 55183 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTATCTTTCTTTCTACTACTATTTTTTCACTTTTTTTTTCTTTATTTAAATTAAATTGAATTAAATTTATTAACAAAATATTAATAAAAATATTTGGGAGGGGGGTTCCTNCTATTTTTTCACTTTTTTTTTCTTTATTTAAATTAAATTGAATTAAATTTATTAACAAAATATTAATAAAAATATTTGGGAGGGGGGTTCCTACACATCTTGGTATATATAAGACCCATCTTGAAGAACTGATGAAAGGTCAGTCCATTGTGCCAAAAAAATCATAAAAACATCATCTCTTTATCTATCTATATTGTCAGCAAAAAAGCATACTTTCATTCATATACTCATATATATTTACACAAACACAAAAAAAAAAAATTATAAAAAAAAAGGAGAGAAAATGGCAGCATCTTGGGTTAAAACTATTACCTCTCCTTTCAAAAAAGCTTGCACCTTTGTCAAACATCAACCTCCAAAGGATAAGAAATCTAAGCAAGGTACTTCTTCTTTCTACATTTTCCCAAAGTCTTTACATCGGTTACCTTTGTCCACAATTTGTTGTCATGTTTTATAACCGAAACCAGTAATGTCACAACTAAATTCAGAAGCACTGATTTGTATGTAAACTTGTAATGATATACTCGTAACTTAAATCAGTAACGTGACAACTAAATCAGAGAAATTGAATTGATAGATTAGATAAGTTTCTCCATGTTATATGAATATTGATTTTATATTTGAAGTATTACTATTCATTTTAATTAGATCTCAAATATGTAGGAGAAATTAATATTGTTGATGAATTGATCATGAATGAAATGGCATATACACATAAAATTGCATCAAATCCTTAAGTAATCAATCTTAAATTCCTATAATTTCCTACAAAAATCTTGCTAAATCCAACATTTCAACCAATAAAAATTAGAGTTACTCCTATTTACCATGAAATCGTTTTTATCAATAGTTATTTGTTATAATCTTGCCGACGCTTACTCTAATTAAGAAAATAAAGTTACTCCGAATGCGTATTAATATTATTTTATTCTTTATTATTGTTTTACGTTTGTTTAACTTAATTAAATAATTGGAAATGAATCTAATTATATTTTTGGTAAATGATTGAATGAACAGAAAATGAGAATACAGTGATGGCTTTACATGGAGAGGTGATGGCTTGCACATACGAGGATGTCCAGGTCATGTGGTCTATGTTGGATAAATCCAAGCCCGGAGCCTGCAATATGACGTCCTGACTCCATCCAAATGGGCCTTACTTTGGGTTCACTTATCCATACCCAATTCGGCCCATTTCTTCTTATTGGCCCGTTCACCTCGGCATTTGTGTCCATGTAGATAATATGTTATTTTGGATAATGCTTTGGAGAAGCCAACTTATTAAAAACCAAAAAAACCAAAATATAATTATGTGAAGTAATTATTTTTTTTACCTTTTTAGTTTTTAGGAGTATGGTTATTTGCCATCCCCAATGGCTTCACCATCAATTGGAAGCTTAGGGTCTTTTTTTTTTTTTCTTTTTCTCATCCTAATTTGTAATGTGTTTAGTAGGCAATCCCCGTGTAAAATAATATTTATCACGGCGAGATTTTTTTCAATGAGATTATTAATCTTCCTTGATTTTTTTTTTCTCAAATTGAATCATTTTCTTTAATGGTGCGTTTTATTAAGAACCTAAATATTTTCTGATTTTGGCTTTAGTTTTCATTAATAAGAAAGGATAGATAAAAAAGAGAGTCTATTTTGACTAGGATCTACTAATTTACTTGACTTGACATTCATATCCCCTGTAATTTTTCATTTCTTCGAATGGTTTATTAAAGGTACTTTATACGAAGTATTATAAAAGAGAGAAGGAATTCGAACACATGACGTGTTGACCCTTGTATATATACCACCG

mRNA sequence

CCCTTATCTTTCTTTCTACTACTATTTTTTCACTTTTTTTTTCTTTATTTAAATTAAATTGAATTAAATTTATTAACAAAATATTAATAAAAATATTTGGGAGGGGGGTTCCTNCTATTTTTTCACTTTTTTTTTCTTTATTTAAATTAAATTGAATTAAATTTATTAACAAAATATTAATAAAAATATTTGGGAGGGGGGTTCCTACACATCTTGGTATATATAAGACCCATCTTGAAGAACTGATGAAAGGTCAGTCCATTGTGCCAAAAAAATCATAAAAACATCATCTCTTTATCTATCTATATTGTCAGCAAAAAAGCATACTTTCATTCATATACTCATATATATTTACACAAACACAAAAAAAAAAAATTATAAAAAAAAAGGAGAGAAAATGGCAGCATCTTGGGTTAAAACTATTACCTCTCCTTTCAAAAAAGCTTGCACCTTTGTCAAACATCAACCTCCAAAGGATAAGAAATCTAAGCAAGAAAATGAGAATACAGTGATGGCTTTACATGGAGAGGTGATGGCTTGCACATACGAGGATGTCCAGGTCATGTGGTCTATGTTGGATAAATCCAAGCCCGGAGCCTGCAATATGACGTCCTGACTCCATCCAAATGGGCCTTACTTTGGGTTCACTTATCCATACCCAATTCGGCCCATTTCTTCTTATTGGCCCGTTCACCTCGGCATTTGTGTCCATGTAGATAATATGTTATTTTGGATAATGCTTTGGAGAAGCCAACTTATTAAAAACCAAAAAAACCAAAATATAATTATGTGAAGTAATTATTTTTTTTACCTTTTTAGTTTTTAGGAGTATGGTTATTTGCCATCCCCAATGGCTTCACCATCAATTGGAAGCTTAGGGTCTTTTTTTTTTTTTCTTTTTCTCATCCTAATTTGTAATGTGTTTAGTAGGCAATCCCCGTGTAAAATAATATTTATCACGGCGAGATTTTTTTCAATGAGATTATTAATCTTCCTTGATTTTTTTTTTCTCAAATTGAATCATTTTCTTTAATGGTGCGTTTTATTAAGAACCTAAATATTTTCTGATTTTGGCTTTAGTTTTCATTAATAAGAAAGGATAGATAAAAAAGAGAGTCTATTTTGACTAGGATCTACTAATTTACTTGACTTGACATTCATATCCCCTGTAATTTTTCATTTCTTCGAATGGTTTATTAAAGGTACTTTATACGAAGTATTATAAAAGAGAGAAGGAATTCGAACACATGACGTGTTGACCCTTGTATATATACCACCG

Coding sequence (CDS)

ATGGCAGCATCTTGGGTTAAAACTATTACCTCTCCTTTCAAAAAAGCTTGCACCTTTGTCAAACATCAACCTCCAAAGGATAAGAAATCTAAGCAAGAAAATGAGAATACAGTGATGGCTTTACATGGAGAGGTGATGGCTTGCACATACGAGGATGTCCAGGTCATGTGGTCTATGTTGGATAAATCCAAGCCCGGAGCCTGCAATATGACGTCCTGA

Protein sequence

MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSMLDKSKPGACNMTS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11348.1	Spo11348.1	mRNA

Homology

[Close]

BLAST of Spo11348.1 vs. NCBI nr
Match: gi|902154092|gb|KNA05784.1| (hypothetical protein SOVF_187280 [Spinacia oleracea])

HSP 1 Score: 152.9 bits (385), Expect = 2.100e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


		  
Query: 1  MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSML 60
          MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSML
Sbjct: 1  MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSML 60

Query: 61 DKSKPGACNMTS 73
          DKSKPGACNMTS
Sbjct: 61 DKSKPGACNMTS 72

[Close]

BLAST of Spo11348.1 vs. NCBI nr
Match: gi|731364698|ref|XP_010694116.1| (PREDICTED: uncharacterized protein LOC104906970 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.6 bits (327), Expect = 1.100e-27
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 1


		  
Query: 1  MAASWVKTITSPFKKACTFVKHQP--PKDKKSKQENENTVMALHGEVMACTYEDVQVMWS 60
          MAASWVKTITSPFKKACTF+ H P  PKDKKSKQ+NENTVMAL GEVMACTYEDVQVMWS
Sbjct: 1  MAASWVKTITSPFKKACTFLNHPPQQPKDKKSKQDNENTVMALQGEVMACTYEDVQVMWS 60

Query: 61 MLDKSKPGACNMTS 73
          MLDKSK   CNMTS
Sbjct: 61 MLDKSKARTCNMTS 74

[Close]

BLAST of Spo11348.1 vs. NCBI nr
Match: gi|645231287|ref|XP_008222323.1| (PREDICTED: uncharacterized protein LOC103322209 [Prunus mume])

HSP 1 Score: 110.2 bits (274), Expect = 1.600e-21
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPKDKKSKQ--ENENTVMALHGEVMACTYEDVQVMWSML 62
          ASW KTITSPF+KACTF   QP +D+K  Q   NE++VMALHGEVMAC+YEDVQVMWS+L
Sbjct: 2  ASWKKTITSPFRKACTFFNQQPGRDQKKSQLQGNESSVMALHGEVMACSYEDVQVMWSIL 61

Query: 63 DKSKPGACNMTS 73
          DKSKP ACN+T+
Sbjct: 62 DKSKPSACNITA 73

[Close]

BLAST of Spo11348.1 vs. NCBI nr
Match: gi|593330325|ref|XP_007138589.1| (hypothetical protein PHAVU_009G221600g [Phaseolus vulgaris])

HSP 1 Score: 109.0 bits (271), Expect = 3.500e-21
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPKD-KKSKQENENTVMALHGEVMACTYEDVQVMWSMLD 62
          ASW KTI +PFKKACTF   QPP+D KKS+ E EN +M LHGEVMAC YEDVQVMWS+LD
Sbjct: 2  ASWKKTIATPFKKACTFFNQQPPRDPKKSQTEQENRIMDLHGEVMACGYEDVQVMWSILD 61

Query: 63 KSKPGACNMTS 73
          KSK  ACN+TS
Sbjct: 62 KSKSSACNITS 72

[Close]

BLAST of Spo11348.1 vs. NCBI nr
Match: gi|1012343257|gb|KYP54449.1| (hypothetical protein KK1_000637 [Cajanus cajan])

HSP 1 Score: 109.0 bits (271), Expect = 3.500e-21
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPKD-KKSKQENENTVMALHGEVMACTYEDVQVMWSMLD 62
          ASW KTI +PFKKACTF   QPP+D KKS+ E EN +M LHGEVMAC YEDVQVMWS+LD
Sbjct: 2  ASWKKTIATPFKKACTFFNQQPPRDHKKSQTEQENRIMDLHGEVMACGYEDVQVMWSILD 61

Query: 63 KSKPGACNMTS 73
          KSK  ACN+TS
Sbjct: 62 KSKSSACNITS 72

[Close]

BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QET2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187280 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.500e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


		  
Query: 1  MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSML 60
          MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSML
Sbjct: 1  MAASWVKTITSPFKKACTFVKHQPPKDKKSKQENENTVMALHGEVMACTYEDVQVMWSML 60

Query: 61 DKSKPGACNMTS 73
          DKSKPGACNMTS
Sbjct: 61 DKSKPGACNMTS 72

[Close]

BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E5X0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g070430 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.800e-28
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 1


		  
Query: 1  MAASWVKTITSPFKKACTFVKHQP--PKDKKSKQENENTVMALHGEVMACTYEDVQVMWS 60
          MAASWVKTITSPFKKACTF+ H P  PKDKKSKQ+NENTVMAL GEVMACTYEDVQVMWS
Sbjct: 1  MAASWVKTITSPFKKACTFLNHPPQQPKDKKSKQDNENTVMALQGEVMACTYEDVQVMWS 60

Query: 61 MLDKSKPGACNMTS 73
          MLDKSK   CNMTS
Sbjct: 61 MLDKSKARTCNMTS 74

[Close]

BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RH73_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G294300 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.400e-21
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPKD-KKSKQENENTVMALHGEVMACTYEDVQVMWSMLD 62
          ASW KTI +PFKKACTF   QPP+D KKS+ E EN +M LHGEVMAC YEDVQVMWS+LD
Sbjct: 2  ASWKKTIATPFKKACTFFNQQPPRDPKKSQTEQENRIMDLHGEVMACGYEDVQVMWSILD 61

Query: 63 KSKPGACNMTS 73
          KSK  ACN+TS
Sbjct: 62 KSKSSACNITS 72

[Close]

BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
Match: A0A151SI35_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_000637 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.400e-21
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPKD-KKSKQENENTVMALHGEVMACTYEDVQVMWSMLD 62
          ASW KTI +PFKKACTF   QPP+D KKS+ E EN +M LHGEVMAC YEDVQVMWS+LD
Sbjct: 2  ASWKKTIATPFKKACTFFNQQPPRDHKKSQTEQENRIMDLHGEVMACGYEDVQVMWSILD 61

Query: 63 KSKPGACNMTS 73
          KSK  ACN+TS
Sbjct: 62 KSKSSACNITS 72

[Close]

BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
Match: V7B116_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G221600g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.400e-21
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPKD-KKSKQENENTVMALHGEVMACTYEDVQVMWSMLD 62
          ASW KTI +PFKKACTF   QPP+D KKS+ E EN +M LHGEVMAC YEDVQVMWS+LD
Sbjct: 2  ASWKKTIATPFKKACTFFNQQPPRDPKKSQTEQENRIMDLHGEVMACGYEDVQVMWSILD 61

Query: 63 KSKPGACNMTS 73
          KSK  ACN+TS
Sbjct: 62 KSKSSACNITS 72

[Close]

BLAST of Spo11348.1 vs. TAIR (Arabidopsis)
Match: AT1G48330.1 (unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 4.100e-12
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKHQPPK-----DKKSKQENEN-TVMALHGEVMACTYEDVQVM 62
          ASW KTI +PFKKA TF  +QP +     + K+++E+E  TV  L G+VMAC YEDV VM
Sbjct: 2  ASWKKTIATPFKKAATFF-NQPQQTNRHANAKAREEHEKRTVQELQGDVMACGYEDVLVM 61

Query: 63 WSMLDKS 64
          WS+LDKS
Sbjct: 62 WSILDKS 67

[Close]

BLAST of Spo11348.1 vs. TAIR (Arabidopsis)
Match: AT3G17580.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-11
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1


		  
Query: 3  ASWVKTITSPFKKACTFVKH--QPPK-------DKKSKQENENT-VMALHGEVMACTYED 62
          ASW KTI +PFKKA TF     Q PK       D ++++E+E   V  L GEVMAC Y+D
Sbjct: 2  ASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRMVQELQGEVMACGYDD 61

Query: 63 VQVMWSMLDKS 64
          V VMWS+LDKS
Sbjct: 62 VLVMWSILDKS 72

The following BLAST results are available for this feature:

BLAST of Spo11348.1 vs. NCBI nr
BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
BLAST of Spo11348.1 vs. ExPASy Swiss-Prot
BLAST of Spo11348.1 vs. TAIR (Arabidopsis)

BLAST of Spo11348.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902154092\|gb\|KNA05784.1\|	2.1e-34	100.	hypothetical protein SOVF_1872...	[more]
gi\|731364698\|ref\|XP_010694116.1\|	1.1e-27	86.4	PREDICTED: uncharacterized pro...	[more]
gi\|645231287\|ref\|XP_008222323.1\|	1.6e-21	72.2	PREDICTED: uncharacterized pro...	[more]
gi\|593330325\|ref\|XP_007138589.1\|	3.5e-21	73.2	hypothetical protein PHAVU_009...	[more]
gi\|1012343257\|gb\|KYP54449.1\|	3.5e-21	73.2	hypothetical protein KK1_00063...	[more]

BLAST of Spo11348.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QET2_SPIOL	1.5e-34	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8E5X0_BETVU	7.8e-28	86.4	Uncharacterized protein OS=Bet...	[more]
A0A0S3RH73_PHAAN	2.4e-21	73.2	Uncharacterized protein OS=Vig...	[more]
A0A151SI35_CAJCA	2.4e-21	73.2	Uncharacterized protein OS=Caj...	[more]
V7B116_PHAVU	2.4e-21	73.2	Uncharacterized protein OS=Pha...	[more]

BLAST of Spo11348.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo11348.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G48330.1	4.1e-12	56.7	unknown protein	[more]
AT3G17580.1	2.0e-11	53.5	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	FAMILY NOT NAMED	coord: 3..70 score: 2.9
None	No IPR available	PANTHER	PTHR33181:SF10	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MKP6	coord: 3..70 score: 2.9

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02915	0.66	Barchart \| Table