Spo11310 (gene) | SpinachBase

Overview


Name	Spo11310
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	SpoScf_03459 : 20212 .. 21989 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGGTGAGTATTTGAGGTTGGAGGATGAGCTTTGATTTTTGTTAGTGGATATGTATGCTTTGTGATAAATTATTTCACAAATATGATCACAATGTTAAACTATAATGTTTAATTTTAATGCTAATCACCTGAGTCCTGAGCTGCAATATATAATCCATCCTGAAGTGTATTAATTGAATTGATACTTGTATTGAATTGATTGGTATTAAGCTAAACTGAGGAATTGAAGTTTAAGAGTGCTTATTTGGAGGAGATCTAAGTATCTAAATGACTTGAGTTCATATAGACTCATATTGGTACCATTAACTTGGTATTTGTATCGAAAATAATACTTCCTCCCGTCTTTTAATACTCGCAACGTTTGTTAGTTTCACGCATGCCAATTGCACAACTTTGATCATTTATATCTTAAATTCTTTTTATGCAAAAATTATAAAAAGTTGATATTTTGAAAATACACATTGAGACGAATCTAACAAGATCGCATATGACTATGTTTTATCTTATATAAAAAGCACTGAGAATAGTCAAAGTAGATTATAGGAATAGTAACAAAAGTCCAAACGTTGCGAGTATTAAAAGATTGGAGGAAGTATGACATTACAAGTCATTTGCGTTATCGGTAATGACATACTTTGTATTATGTAATGGTACTACAAATGATTGTATAAGGGTGACCAGTTGATGTTTAACAATTCTCGCTTGTTTGATGGATTTGGTGTTAGTATTAGATATCCCATGCCAAGATTAATTGTGGCGAAATTTAGACTGTGGACTAAGCTCTAAGAGTGAGCATTAGTCACTATGGTGAACATTATTATTAGTGTTATACCACTTACATGGATTCAAAAGAAAAAAAATAAGAAAACGATGGAGATAAAACATGCGCGATCTCTATGACAAATTACAATTTTACCCTTACATACGCGATTCTAGAAGTCGGGTGCACGGAGGAGACTAAATATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAAAGGTATAAAGAATATACCTTCCATCAAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA

mRNA sequence

ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGGTGAGTATTTGAGAATATACCTTCCATCAAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA

Coding sequence (CDS)

ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGGTGAGTATTTGAGAATATACCTTCCATCAAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA

Protein sequence

MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASESLVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYGNAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIGEYLRIYLPSSQEGGVLPGNQIGLSGSAAAAETEKEFEETGVLYLLLSLNFFPPRNDALVAPNTFPFFCELFHFF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11310.1	Spo11310.1	mRNA

Homology

[Close]

BLAST of Spo11310.1 vs. NCBI nr
Match: gi|902186883|gb|KNA10804.1| (hypothetical protein SOVF_140980 [Spinacia oleracea])

HSP 1 Score: 372.5 bits (955), Expect = 6.000e-100
Identity = 182/185 (98.38%), Postives = 184/185 (99.46%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRL 185

[Close]

BLAST of Spo11310.1 vs. NCBI nr
Match: gi|902227647|gb|KNA20771.1| (hypothetical protein SOVF_049390 [Spinacia oleracea])

HSP 1 Score: 371.7 bits (953), Expect = 1.000e-99
Identity = 181/185 (97.84%), Postives = 184/185 (99.46%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALS+LAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSILAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRL 185

[Close]

BLAST of Spo11310.1 vs. NCBI nr
Match: gi|731314461|ref|XP_010686698.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 346.3 bits (887), Expect = 4.600e-92
Identity = 169/185 (91.35%), Postives = 174/185 (94.05%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRM 185

[Close]

BLAST of Spo11310.1 vs. NCBI nr
Match: gi|731314463|ref|XP_010686700.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 345.5 bits (885), Expect = 7.800e-92
Identity = 169/185 (91.35%), Postives = 174/185 (94.05%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPGPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRM 185

[Close]

BLAST of Spo11310.1 vs. NCBI nr
Match: gi|731314513|ref|XP_010686892.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein NIP7 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 344.4 bits (882), Expect = 1.700e-91
Identity = 168/185 (90.81%), Postives = 173/185 (93.51%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGPAQDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPAQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHA   LA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHATPFLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRM 185

[Close]

BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU63_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_140980 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 4.200e-100
Identity = 182/185 (98.38%), Postives = 184/185 (99.46%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRL 185

[Close]

BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM2_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_049390 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 7.100e-100
Identity = 181/185 (97.84%), Postives = 184/185 (99.46%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTH+GNFHLTIHALS+LAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSILAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDIN GDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRL 185

[Close]

BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4Y2_BETVU (60S ribosome subunit biogenesis protein NIP7 homolog OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g014050 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.200e-92
Identity = 169/185 (91.35%), Postives = 174/185 (94.05%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDIN GDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRI 186
           EYLR+
Sbjct: 181 EYLRM 185

[Close]

BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
Match: A0A0D3DEA0_BRAOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.200e-76
Identity = 142/184 (77.17%), Postives = 161/184 (87.50%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEK+FKFVGNNLKNIV+NPS+EGP  DP  GRYCFRLQKNRVYYASES
Sbjct: 1   MRPLDENETTVVFEKIFKFVGNNLKNIVENPSHEGPESDP--GRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVSLG  +GK+TH+G+FHLTI +L+LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKSLVSLGTCIGKYTHAGSFHLTIMSLNLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DIG
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIG 180

Query: 181 EYLR 185
           EYLR
Sbjct: 181 EYLR 182

[Close]

BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
Match: A0A078F8S2_BRANA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica napus GN=BnaC07g33200D PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.200e-76
Identity = 142/184 (77.17%), Postives = 161/184 (87.50%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEK+FKFVGNNLKNIV+NPS+EGP  DP  GRYCFRLQKNRVYYASES
Sbjct: 1   MRPLDENETTVVFEKIFKFVGNNLKNIVENPSHEGPESDP--GRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVSLG  +GK+TH+G+FHLTI +L+LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKSLVSLGTCIGKYTHAGSFHLTIMSLNLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DIG
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIG 180

Query: 181 EYLR 185
           EYLR
Sbjct: 181 EYLR 182

[Close]

BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.500e-53
Identity = 103/184 (55.98%), Postives = 130/184 (70.65%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEM 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+DVPLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 174

Query: 181 EYLR 185
           EY+R
Sbjct: 181 EYIR 174

[Close]

BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.400e-53
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  IMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 174

Query: 181 EYLR 185
           EY+R
Sbjct: 181 EYVR 174

[Close]

BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
Match: NIP7_PONAB (60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.400e-53
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  IMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 174

Query: 181 EYLR 185
           EY+R
Sbjct: 181 EYVR 174

[Close]

BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
Match: NIP7_MOUSE (60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.600e-52
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEM 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT +  F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  MLKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 174

Query: 181 EYLR 185
           EY+R
Sbjct: 181 EYVR 174

[Close]

BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
Match: NIP7_PIG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.600e-52
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + L+SLG   GKFT +  F L I AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLAANISGDKLMSLGTCFGKFTKTHKFRLHITALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 174

Query: 181 EYLR 185
           EY+R
Sbjct: 181 EYVR 174

[Close]

BLAST of Spo11310.1 vs. TAIR (Arabidopsis)
Match: AT4G15770.1 (RNA binding)

HSP 1 Score: 278.9 bits (712), Expect = 3.200e-75
Identity = 136/184 (73.91%), Postives = 156/184 (84.78%), Query Frame = 1


		  
Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEKLFKFVGNNLK IV+NPS EGP  +  PG YCFRLQKNRVYY SE+
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGP--ESTPGSYCFRLQKNRVYYVSEA 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVS G  +GK+TH+G+FHLTI +L++LA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DIG
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIG 180

Query: 181 EYLR 185
           EYLR
Sbjct: 181 EYLR 182

The following BLAST results are available for this feature:

BLAST of Spo11310.1 vs. NCBI nr
BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
BLAST of Spo11310.1 vs. TAIR (Arabidopsis)

BLAST of Spo11310.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902186883\|gb\|KNA10804.1\|	6.0e-100	98.3	hypothetical protein SOVF_1409...	[more]
gi\|902227647\|gb\|KNA20771.1\|	1.0e-99	97.8	hypothetical protein SOVF_0493...	[more]
gi\|731314461\|ref\|XP_010686698.1\|	4.6e-92	91.3	PREDICTED: 60S ribosome subuni...	[more]
gi\|731314463\|ref\|XP_010686700.1\|	7.8e-92	91.3	PREDICTED: 60S ribosome subuni...	[more]
gi\|731314513\|ref\|XP_010686892.1\|	1.7e-91	90.8	PREDICTED: LOW QUALITY PROTEIN...	[more]

BLAST of Spo11310.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QU63_SPIOL	4.2e-100	98.3	60S ribosome subunit biogenesi...	[more]
A0A0K9RMM2_SPIOL	7.1e-100	97.8	60S ribosome subunit biogenesi...	[more]
A0A0J8D4Y2_BETVU	3.2e-92	91.3	60S ribosome subunit biogenesi...	[more]
A0A0D3DEA0_BRAOL	4.2e-76	77.1	60S ribosome subunit biogenesi...	[more]
A0A078F8S2_BRANA	4.2e-76	77.1	60S ribosome subunit biogenesi...	[more]

BLAST of Spo11310.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NIP7_RAT	5.5e-53	55.9	60S ribosome subunit biogenesi...	[more]
NIP7_HUMAN	9.4e-53	55.4	60S ribosome subunit biogenesi...	[more]
NIP7_PONAB	9.4e-53	55.4	60S ribosome subunit biogenesi...	[more]
NIP7_MOUSE	1.6e-52	55.4	60S ribosome subunit biogenesi...	[more]
NIP7_PIG	1.6e-52	55.4	60S ribosome subunit biogenesi...	[more]

BLAST of Spo11310.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G15770.1	3.2e-75	73.9	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 105..180 score: 1.
IPR002478	PUA domain	PROFILE	PS50890	PUA	coord: 104..180 score: 12
IPR005155	Ribosome biogenesis factor NIP7-like	PFAM	PF03657	UPF0113	coord: 51..184 score: 1.
IPR015947	PUA-like domain	GENE3D	2.30.130.10		coord: 104..185 score: 1.3
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 105..180 score: 4.6
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..184 score: 3.0
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..184 score: 3.0
None	No IPR available	unknown	SSF88802	Pre-PUA domain	coord: 1..103 score: 4.38

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042255	ribosome assembly
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005198	structural molecule activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00357	0.75	Barchart \| Table
Spo18502	0.72	Barchart \| Table
Spo10927	0.69	Barchart \| Table
Spo15447	0.68	Barchart \| Table
Spo19870	0.66	Barchart \| Table
Spo14416	0.65	Barchart \| Table
Spo11865	0.65	Barchart \| Table