Spo11304 (gene)

Overview
NameSpo11304
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L18a-1
LocationSpoScf_03018 : 14531 .. 16605 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATAAACAAATGACCCCTTTCTTGAAGTCATTTTCAACCAACCATAACAAAGTTACAATTACTCTTGGGCCCTTTCAAACGTGACCGAACCTTCCCCTCTCTTTCCCTCTTTTATCCTCTTGATCGAAAGTCTTTGGATTGAAAAGAAACCAAAACCATTAAAAAGAAATTCATTTAATGATTTCCAAAACAATTATTCACCAAGAACAGTAGAATTGTTGAAACAATCATTCACTAAAAAGAAATTCAGCAAGGTTTTCGACTAGAAATTCTAAACGCATTTGAAGTTAATAAAAGATGAGTGCAGAAGGCAAGATCGTTTCCCACCATCATGAGCGCAACCAGCCTCATCAGGAAGATTTCGATCAATCTCCGCCCCCTCCGCCACCGCCTGTGGTGCCTCACTACGGCACATTTCAGGGTATTCCGTCCTCTCCCGCCATGGGTTTCCCTCAGCCTGCCCCACCTCCTGGCTCCATGGATCCCCCTCCTGACTACTACACCCGTGGCTATCAAGCCGTTCCAGGTCCTTTTCTTACTCTTAAACTCTCCCCATTTCCCATTTTTGGTGGATCATTGTTTCTTTTTCCAATGCATAAAGAGCTGCAAATAATAAATGATGTAGACAGATTTGATCTTGAGTCTTGGGTACCTTCCCCCCGAATACTCTACCAACTAAGCTATCTCGCTCGCTCCCGCCCATATTTTGGGTGGATTATTGTTGCAGTTTCAGTTAATGATGATGATTATGGAAATTGTATATCTGGTTGTAAAGGGTAGTTGTTGTTTGAGGGGTTAAATGGGTTTTGAGCAGGAATCTGGGTTTTTTGTGCGTTGACTTATGGGCTCAATAATTCTGTTTATTTTGCTTGAGAATTTGTGTGATATCAATGTTGTATGTGATTGCTGATTAGTAATTTCTGAAGCCATATTTCTTGCGAATTTGCAATTTTATGTTTGTTCTTAAGAATGTAGGGTTACATCTGACAAAATAGTAACAAATAAAGCATTCTTGTATTGAATGGAAAATTATGAGATGTTTCTGTTTGAGTACCTCAACATTTGAAGGCTTTTATTGGTCAAAGGAGGACTCTGAATCGTAGTTTGGGAGGGTTACACTTTGTTGATATTTCGGATTATTTGTTTGTGTTAAAGATGAACTGTCAAAGCACCTTTTCAAGTATATGTTATATCTTAAACTAATGAAGATTAACTTAGCTGCTGATCTTGGCTGCTCTTGTTTAGTACTTGTAGATTTTGATCAGAATGGAATTGAGGCTTCACTGCTGCCTAATAACTTAGTTATGTATTATGTTGAAGGAAATCTTGTAAATAAAACTTAAAATAGTTGCAATTGACGGCTATATTCTTGGTGGTGGATGTAATTTCTTAATGATTTATACTTCGTATGACTTATAGCTGATCTGATCATGTTTCCACAACTATATGAACCAGTAATTTTTCTGGAGCAGGTCTTAGTTCTGGAACATACCATGATTGTTAGTTGACCTTGGGATCCTAATGGAAGTTTGGATGAGATAAACTGCAGTCCCCCCCCCTACCCCCTCCCCGTGTATCCATGATACGATTGTTATCTTTTGTTACCTTTCTTTCTGTGAGTGCCTTTGTCTTTGATCCCGAGGTGGTTTGTATATGTTTGTACTATACTTGATATGAGCTTTCTCAAAATACTTCAACATGTATACTATTTTTGCTGATTAGTAAATTTATTCGACTATGACAAGGTTATGTGGTTGCTCAAGGAAGACCAATGAGAGAGGATCATGGCGATCGCCTTCCTTGCTGTGGTATTGGTTGTGGCTGGTTCTTGTAATGTCTCGCTCCCTTTCCCTTTGTTTCCCTCTGAGTTCATCCTTTGATTCGTGTTCGCTTCACTAAATAAGAATTAACTCACTTGAATACACATTAATGAGAGCTTCTAGGTGGTTGAATGGTGAAATAGAGAACAGAATATTTATGTATGAACTAATGGCCCATGAATGAAATCAATTGTTGTGTTAGTAATATAAAATCAGTCCACTAAGTGCCTGATTGGTCAATTTTCTAAAATAA

mRNA sequence

CAAATAAACAAATGACCCCTTTCTTGAAGTCATTTTCAACCAACCATAACAAAGTTACAATTACTCTTGGGCCCTTTCAAACGTGACCGAACCTTCCCCTCTCTTTCCCTCTTTTATCCTCTTGATCGAAAGTCTTTGGATTGAAAAGAAACCAAAACCATTAAAAAGAAATTCATTTAATGATTTCCAAAACAATTATTCACCAAGAACAGTAGAATTGTTGAAACAATCATTCACTAAAAAGAAATTCAGCAAGGTTTTCGACTAGAAATTCTAAACGCATTTGAAGTTAATAAAAGATGAGTGCAGAAGGCAAGATCGTTTCCCACCATCATGAGCGCAACCAGCCTCATCAGGAAGATTTCGATCAATCTCCGCCCCCTCCGCCACCGCCTGTGGTGCCTCACTACGGCACATTTCAGGGTATTCCGTCCTCTCCCGCCATGGGTTTCCCTCAGCCTGCCCCACCTCCTGGCTCCATGGATCCCCCTCCTGACTACTACACCCGTGGCTATCAAGCCGTTCCAGGTTATGTGGTTGCTCAAGGAAGACCAATGAGAGAGGATCATGGCGATCGCCTTCCTTGCTGTGGTATTGGTTGTGGCTGGTTCTTGTAATGTCTCGCTCCCTTTCCCTTTGTTTCCCTCTGAGTTCATCCTTTGATTCGTGTTCGCTTCACTAAATAAGAATTAACTCACTTGAATACACATTAATGAGAGCTTCTAGGTGGTTGAATGGTGAAATAGAGAACAGAATATTTATGTATGAACTAATGGCCCATGAATGAAATCAATTGTTGTGTTAGTAATATAAAATCAGTCCACTAAGTGCCTGATTGGTCAATTTTCTAAAATAA

Coding sequence (CDS)

ATGAGTGCAGAAGGCAAGATCGTTTCCCACCATCATGAGCGCAACCAGCCTCATCAGGAAGATTTCGATCAATCTCCGCCCCCTCCGCCACCGCCTGTGGTGCCTCACTACGGCACATTTCAGGGTATTCCGTCCTCTCCCGCCATGGGTTTCCCTCAGCCTGCCCCACCTCCTGGCTCCATGGATCCCCCTCCTGACTACTACACCCGTGGCTATCAAGCCGTTCCAGGTTATGTGGTTGCTCAAGGAAGACCAATGAGAGAGGATCATGGCGATCGCCTTCCTTGCTGTGGTATTGGTTGTGGCTGGTTCTTGTAA

Protein sequence

MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGSMDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11304.1Spo11304.1mRNA


Homology
[Close]
BLAST of Spo11304.1 vs. NCBI nr
Match: gi|902188845|gb|KNA11242.1| (hypothetical protein SOVF_136910 [Spinacia oleracea])

HSP 1 Score: 231.9 bits (590), Expect = 5.200e-58
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS 60
           MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS
Sbjct: 1   MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS 60

Query: 61  MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL
Sbjct: 61  MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 105
[Close]
BLAST of Spo11304.1 vs. NCBI nr
Match: gi|731365482|ref|XP_010694550.1| (PREDICTED: 60S ribosomal protein L18a-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 176.4 bits (446), Expect = 2.600e-41
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS 60
           MS EGKIV HHHE++QPH    +   PPPPPPVVPHYGTFQG+PSSPAMGFPQPAPPPGS
Sbjct: 1   MSEEGKIVYHHHEQHQPHHHHQEDESPPPPPPVVPHYGTFQGVPSSPAMGFPQPAPPPGS 60

Query: 61  MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           MDPPP+YY+RGYQAVPGYVVA+GRPM E    RLPCCGIG GW L
Sbjct: 61  MDPPPEYYSRGYQAVPGYVVAEGRPMSE---HRLPCCGIGYGWLL 102
[Close]
BLAST of Spo11304.1 vs. NCBI nr
Match: gi|697186408|ref|XP_009602243.1| (PREDICTED: formin-A-like isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 120.9 bits (302), Expect = 1.300e-24
Identity = 63/108 (58.33%), Postives = 71/108 (65.74%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHE--RNQPHQEDFDQSPPPPPPPVVP-HYGTFQGIPSSPAMGFPQPAPP 60
           MS EGK   HHH    +  H  + DQ PPPPPPP  P  YGTFQ  P  P +GFPQP PP
Sbjct: 1   MSEEGKDSHHHHHGHHHHHHHHEDDQPPPPPPPPPPPAEYGTFQA-PPQPVVGFPQPVPP 60

Query: 61  PGSMDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           PG+ +P P+YY R YQ VPGYVV +  P+RE    RLPCCGIG GWFL
Sbjct: 61  PGAFEPSPEYYARAYQVVPGYVVDERGPVRE---PRLPCCGIGLGWFL 104
[Close]
BLAST of Spo11304.1 vs. NCBI nr
Match: gi|697186414|ref|XP_009602246.1| (PREDICTED: 60S ribosomal protein L18a-like protein isoform X3 [Nicotiana tomentosiformis])

HSP 1 Score: 120.9 bits (302), Expect = 1.300e-24
Identity = 63/108 (58.33%), Postives = 71/108 (65.74%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHE--RNQPHQEDFDQSPPPPPPPVVP-HYGTFQGIPSSPAMGFPQPAPP 60
           MS EGK   HHH    +  H  + DQ PPPPPPP  P  YGTFQ  P  P +GFPQP PP
Sbjct: 1   MSEEGKDSHHHHHGHHHHHHHHEDDQPPPPPPPPPPPAEYGTFQA-PPQPVVGFPQPVPP 60

Query: 61  PGSMDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           PG+ +P P+YY R YQ VPGYVV +  P+RE    RLPCCGIG GWFL
Sbjct: 61  PGAFEPSPEYYARAYQVVPGYVVDERGPVRE---PRLPCCGIGLGWFL 104
[Close]
BLAST of Spo11304.1 vs. NCBI nr
Match: gi|697186412|ref|XP_009602245.1| (PREDICTED: 60S ribosomal protein L18a-like protein isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 120.9 bits (302), Expect = 1.300e-24
Identity = 63/108 (58.33%), Postives = 71/108 (65.74%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHE--RNQPHQEDFDQSPPPPPPPVVP-HYGTFQGIPSSPAMGFPQPAPP 60
           MS EGK   HHH    +  H  + DQ PPPPPPP  P  YGTFQ  P  P +GFPQP PP
Sbjct: 1   MSEEGKDSHHHHHGHHHHHHHHEDDQPPPPPPPPPPPAEYGTFQA-PPQPVVGFPQPVPP 60

Query: 61  PGSMDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           PG+ +P P+YY R YQ VPGYVV +  P+RE    RLPCCGIG GWFL
Sbjct: 61  PGAFEPSPEYYARAYQVVPGYVVDERGPVRE---PRLPCCGIGLGWFL 104
[Close]
BLAST of Spo11304.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVD6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136910 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 3.600e-58
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS 60
           MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS
Sbjct: 1   MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS 60

Query: 61  MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL
Sbjct: 61  MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 105
[Close]
BLAST of Spo11304.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBI2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g094000 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.800e-41
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 1 

		  

Query: 1   MSAEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGIPSSPAMGFPQPAPPPGS 60
           MS EGKIV HHHE++QPH    +   PPPPPPVVPHYGTFQG+PSSPAMGFPQPAPPPGS
Sbjct: 1   MSEEGKIVYHHHEQHQPHHHHQEDESPPPPPPVVPHYGTFQGVPSSPAMGFPQPAPPPGS 60

Query: 61  MDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           MDPPP+YY+RGYQAVPGYVVA+GRPM E    RLPCCGIG GW L
Sbjct: 61  MDPPPEYYSRGYQAVPGYVVAEGRPMSE---HRLPCCGIGYGWLL 102
[Close]
BLAST of Spo11304.1 vs. UniProtKB/TrEMBL
Match: A0A068UCT4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021436001 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.900e-21
Identity = 62/112 (55.36%), Postives = 71/112 (63.39%), Query Frame = 1 

		  

Query: 1   MSAEGK--IVSHHHERNQPHQEDF--DQSPPPPPPPVVPHYGTFQGI---PSSPAMGFPQ 60
           MS +GK    SHHH     H +D    +SPPPP PP  P YGTFQG+   P  P +GFPQ
Sbjct: 1   MSDDGKESYRSHHHHHISHHHDDEAKQESPPPPLPP--PEYGTFQGVANYPPQPVIGFPQ 60

Query: 61  PAPPPGSMDPPPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           P PPPG+ D P  YY  GYQAVPG+ VA+G P+      RLPCCGIG GWFL
Sbjct: 61  PVPPPGASDRP--YYAHGYQAVPGHTVAEGTPV-TGRQRRLPCCGIGLGWFL 107
[Close]
BLAST of Spo11304.1 vs. UniProtKB/TrEMBL
Match: B9SVW7_RICCO (60S ribosomal protein L18a, plant, putative OS=Ricinus communis GN=RCOM_0747380 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.000e-20
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 1 

		  

Query: 12  HERNQPHQEDFDQSPPPPPPPVVPHYGTFQGI--------PSSPAMGFPQPAPPPGSMDP 71
           H+ +Q H +   QS PPPPPP    YGTFQG+        P  P +GFPQP PPPG+ +P
Sbjct: 16  HQHHQYHHQHPQQSQPPPPPP---QYGTFQGVANYPPPHPPQHPVIGFPQPVPPPGASEP 75

Query: 72  PPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           P   Y  GYQ VPGY VA+GRP+RE    RLPCCGIG GWFL
Sbjct: 76  PA--YPHGYQTVPGYAVAEGRPVRE---RRLPCCGIGVGWFL 109
[Close]
BLAST of Spo11304.1 vs. UniProtKB/TrEMBL
Match: A0A067LCW3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20159 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.400e-20
Identity = 55/108 (50.93%), Postives = 63/108 (58.33%), Query Frame = 1 

		  

Query: 3   AEGKIVSHHHERNQPHQEDFDQSPPPPPPPVVPHYGTFQGI---PSSPAMGFPQPAPPPG 62
           + G +V HHH +N                   P YGTFQG+   P  P +GFPQP PPPG
Sbjct: 9   SRGVVVDHHHHQNPQ-----------------PQYGTFQGVANYPQQPVIGFPQPVPPPG 68

Query: 63  SMDP--PPDYYTRGYQAVPGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           + +P  PP YY  GYQ VPGY VA GRP+RE    RLPCCGIG GWFL
Sbjct: 69  ATEPSAPPQYYAHGYQTVPGYAVADGRPVRE---HRLPCCGIGLGWFL 96
[Close]
BLAST of Spo11304.1 vs. ExPASy Swiss-Prot
Match: R18AL_ARATH (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-6
Identity = 35/90 (38.89%), Postives = 43/90 (47.78%), Query Frame = 1 

		  

Query: 36  HYGTFQGIPSSPAMGFPQPAPPPGSMDPP------PDY-------------YTRGYQAV- 95
           +YGTFQG+ +     FP P PPP  M P       P +             Y +G+  V 
Sbjct: 20  YYGTFQGVAN-----FPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVV 79

Query: 96  PGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           P Y V + RPM E     LPCCG+G GWFL
Sbjct: 80  PDYTVVEVRPMIEHE---LPCCGLGMGWFL 101
[Close]
BLAST of Spo11304.1 vs. TAIR (Arabidopsis)
Match: AT1G17080.1 (Ribosomal protein L18ae family)

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-15
Identity = 42/77 (54.55%), Postives = 49/77 (63.64%), Query Frame = 1 

		  

Query: 37  YGTFQGIP-------SSPAMGFPQPAPPPGSMDPPPDYYTRGYQAVPGY-VVAQGRPMRE 96
           YGTFQG+        S+P  GFPQP+ PPG  D    YY  GYQ VP +  VA+GRP+R+
Sbjct: 23  YGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGAPYYAHGYQTVPVHGGVAEGRPVRQ 82

Query: 97  DHGDRLPCCGIGCGWFL 106
               RLPCCGIG GWFL
Sbjct: 83  ---RRLPCCGIGLGWFL 96
[Close]
BLAST of Spo11304.1 vs. TAIR (Arabidopsis)
Match: AT1G53560.1 (Ribosomal protein L18ae family)

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-14
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1 

		  

Query: 37  YGTFQGIPS------------SPAMGFPQPAPPPGSM--DPPPDYYTRGYQAVPGYVVAQ 96
           YGTFQG+P+             P +G PQP+PPPGS   D     Y + +Q V GY V+Q
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPGSPHHDISVHQYIQEHQTVAGYPVSQ 75

Query: 97  GRPMREDHGDRLPCCGIGCGWFL 106
           GRP R++   RLPCCG+G GWFL
Sbjct: 76  GRPARQN---RLPCCGLGLGWFL 95
[Close]
BLAST of Spo11304.1 vs. TAIR (Arabidopsis)
Match: AT1G29970.2 (60S ribosomal protein L18A-1)

HSP 1 Score: 53.9 bits (128), Expect = 6.900e-8
Identity = 35/90 (38.89%), Postives = 43/90 (47.78%), Query Frame = 1 

		  

Query: 36  HYGTFQGIPSSPAMGFPQPAPPPGSMDPP------PDY-------------YTRGYQAV- 95
           +YGTFQG+ +     FP P PPP  M P       P +             Y +G+  V 
Sbjct: 20  YYGTFQGVAN-----FPTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVVV 79

Query: 96  PGYVVAQGRPMREDHGDRLPCCGIGCGWFL 106
           P Y V + RPM E     LPCCG+G GWFL
Sbjct: 80  PDYTVVEVRPMIEHE---LPCCGLGMGWFL 101
The following BLAST results are available for this feature:
BLAST of Spo11304.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902188845|gb|KNA11242.1|5.2e-58100.hypothetical protein SOVF_1369... [more]
gi|731365482|ref|XP_010694550.1|2.6e-4178.1PREDICTED: 60S ribosomal prote... [more]
gi|697186408|ref|XP_009602243.1|1.3e-2458.3PREDICTED: formin-A-like isofo... [more]
gi|697186414|ref|XP_009602246.1|1.3e-2458.3PREDICTED: 60S ribosomal prote... [more]
gi|697186412|ref|XP_009602245.1|1.3e-2458.3PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo11304.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVD6_SPIOL3.6e-58100.Uncharacterized protein OS=Spi... [more]
A0A0J8BBI2_BETVU1.8e-4178.1Uncharacterized protein OS=Bet... [more]
A0A068UCT4_COFCA7.9e-2155.3Uncharacterized protein OS=Cof... [more]
B9SVW7_RICCO1.0e-2055.860S ribosomal protein L18a, pl... [more]
A0A067LCW3_JATCU1.4e-2050.9Uncharacterized protein OS=Jat... [more]
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BLAST of Spo11304.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
R18AL_ARATH1.2e-638.860S ribosomal protein L18a-lik... [more]
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BLAST of Spo11304.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G17080.12.0e-1554.5Ribosomal protein L18ae family[more]
AT1G53560.13.8e-1448.1Ribosomal protein L18ae family[more]
AT1G29970.26.9e-838.860S ribosomal protein L18A-1[more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0016573 histone acetylation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0016310 phosphorylation
biological_process GO:0050821 protein stabilization
biological_process GO:0042550 photosystem I stabilization
biological_process GO:0009780 photosynthetic NADP+ reduction
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006635 fatty acid beta-oxidation
cellular_component GO:0005840 ribosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0012505 endomembrane system
cellular_component GO:0044428 nuclear part
cellular_component GO:0009523 photosystem II
cellular_component GO:0009295 nucleoid
cellular_component GO:0005778 peroxisomal membrane
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030093 chloroplast photosystem I
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0016301 kinase activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0004386 helicase activity
RNA-Seq Expression