Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGCCGAAAACGGAAACATGGTACGTATCGGAAAATATTATCGGAAATGGAAATATTGCCGGAATCGGAAATATTGCCGGAAACGGAAATATTGTCAGAATCGGAAATATTATCGGAATCGGAAAATAATTCCGGAAACGGAAATATTAAATATTTGTTCGAAACGGAAATTAATTCCGGAATCGGAAATGTTAAATATTGTTCGTATCAGAAATGAAATCCGGAATCGGAAATTTAATTGGAAGCGTATCGTACGAATTAGCATCGGACGAGACTTGCTAGACGAAGGCCCAGCACGAAGCCAGGCCGTCGCCCAGCAAGCCACACGCATCAACACACGCCAAAGTCAGCCAGGGCCAGCGCAAGGCCAGGCCTAGCAAGGCATGGCGCGCGCTCTCAACAAATGGGTTGCGAGCATTGGGCCATGGCGCCGTGCAGCTCGCGTGGGCCGCGAGGCATGCGCGTGGGCTGTGCGTTGCTCGTGGTCGTGCTCGTGCTCGTGTGCATGCTATACGAATCCTAAAGCTATCGGAATTCGTGCTATGATTAAATCCTAATCCTAAAAGATAAAATTAATTATTTAGAGTTTTAAAAGGATTCTAATTAATTAATTAGTATTCTAACAGGATTCGAAATCCTTTTCCATGGTTCTATAAATATATGCCTAGGGTCATAAATTTATACAAGAGTTTTTAACAAGTATTCATACAATAAAAGCTGTGATTTTTGAGCAGAAAAATTAGTCACATTACTTGCCCATTTAGCCGAAAATAATAGTACCTTAAGGGCGATTCTAGTTGGTCAATCTTAAGGCGGATCCGGACGTGCTGTGGACTATCTACGGAGGGACGACACTTGGAGTCCTAAAGACTTGTTCGTGTTCGGTTCGGGCGCAGCTAGGGAGAGCACGCTACAAAGTGTATGCATCTAAATTATGCTAATTGATTATGTGTAAATAATATGTTTCCTGGCATTAAGGTTTTTCCGCATGATTTATGTTTTTCATATGTATCATAACCTAACACTATCAACCTTGGTACCCTACATATTTTTCTCCTAAAAACATTACTCACACTTTCTTTTTCATTTCACCATATTTAATAGATTCGTTTTTTATTGTATTGAATTTTATATTAGTACTTTGAAGCAATTGAAGTATATTGCAATCATGCTTAAAATTTCATTAGTCATATTTATCTATTTAAAAAATATATATATTATTAAAAAAATAATATAAAGAACAATTAAAAAAGAAAAAAATTATTTAGTCAATGTTTATTAGAAAAATATAGAGAGAAAAAATTAACACAATAAAATATTTGTCTAATATTAATAAAGAAATAAAATGTGTCAATGTCCTTAATGGTCATTTTACATATTAAAAAGCTAACAGCTATCAGCTAATTTACCAAACAGTTTTACACAAACAGTTAATTCAACAAGCTAGTCAAATCCGTTAATACAAACAACTAATAGCTAACACCTAGTCAAACCAGCTAACAACTCCTAAACAAACAGGGCCTTAGATTTTGGAACTCACCTTCACACTTGTCGTAGTGTTTTATACTTCCTCTATTCTTATTTATATGACATAATTGTGGTTTTGACACTATTCACACAAGCTCCTTTGATTTCAATTTGTGATTTATTTTTAAGAAAAAACATAGTTGTGTGGGATCTTGTTTGATTCGTCTTAATAAATATTTTTTAAATATCAACTTTTATATTTTTTTTCTTATCCATAATTGAAGATATTAAAGTTTGAAATCATGCATTGACAAGCGTGACTAAATAATTGTGTCATATAAATAAGAACAGAGGAAGTAACATTTATCTCAAATTCTCAATAGTCTAGCCAGTGTAGGCACAAACTTTCTTCAAGACTCCTCTCAGACTCGGAGTGGGGATAATCTCACCCTTCGTCATTGATCTATCTTAAACAGCCCGAGCTCCAACCGGCCGATCCCCTTGATTGGCGAGTAAACATATCAAGGGGTATTTTCGTAAATAAATTATCAAAATATACAATCTACATATTTGAGTATACAATATCTTTTTGTATTAATTTTTTTTTTTTTATAATATCAAATATGTTGTACATTGCAATTTCTAAATTATATATTTGCTAATTGTAATTACAAAAATACCACTTGATATGTCAATCAAGGGATTGTTTTGAAATTTCTCTAAACAGCCCACCTGAAAGAAAGACAGTCTACTTTAGTCTAGTGTGTAGTACTGCTACTGACGCTGCGTTCTCATCGCTACCATTTCTTAAATTCCAACCTCAAAAATCCTGAACTGAAGTTCAAAATAGCTCCCAGTAACGGCAATTATACTCCATTCAATCCAACACTCAAACAAGCAGATTTGCAAGAATTCCCAATAAAACACATCAAATTCATCAATTTACTCCACAAAACAGAGTTAAACTAACAAGTGATGATTTCAATGCAAACCTTATCCCTACCACCTTCACCCACACCAAACCCACCACCATTTTCTCTCTCCAAACCTTCCTTCTCACAGAGAGTCTACATCCCTTCCTATATTTACAAACACCCATCTGCAATTCTCCTCGAAATCTGCACCTCAATTCAAGAACTCCGTCAAATCGTTCCTATTATTTACAAACATGGATTATACGAT ATGTTGCCGAAAACGGAAACATGATTTGCAAGAATTCCCAATAAAACACATCAAATTCATCAATTTACTCCACAAAACAGAGTTAAACTAACAAGTGATGATTTCAATGCAAACCTTATCCCTACCACCTTCACCCACACCAAACCCACCACCATTTTCTCTCTCCAAACCTTCCTTCTCACAGAGAGTCTACATCCCTTCCTATATTTACAAACACCCATCTGCAATTCTCCTCGAAATCTGCACCTCAATTCAAGAACTCCGTCAAATCGTTCCTATTATTTACAAACATGGATTATACGAT ATGATTTCAATGCAAACCTTATCCCTACCACCTTCACCCACACCAAACCCACCACCATTTTCTCTCTCCAAACCTTCCTTCTCACAGAGAGTCTACATCCCTTCCTATATTTACAAACACCCATCTGCAATTCTCCTCGAAATCTGCACCTCAATTCAAGAACTCCGTCAAATCGTTCCTATTATTTACAAACATGGATTATACGAT MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVPIIYKHGLYD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11269.1 vs. NCBI nr
Match: gi|902208628|gb|KNA15996.1| (hypothetical protein SOVF_093190 [Spinacia oleracea]) HSP 1 Score: 140.2 bits (352), Expect = 1.400e-30 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1
BLAST of Spo11269.1 vs. NCBI nr
Match: gi|731365648|ref|XP_010694640.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 92.4 bits (228), Expect = 3.200e-16 Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1
BLAST of Spo11269.1 vs. NCBI nr
Match: gi|694366641|ref|XP_009361929.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Pyrus x bretschneideri]) HSP 1 Score: 76.6 bits (187), Expect = 1.800e-11 Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
BLAST of Spo11269.1 vs. NCBI nr
Match: gi|298205132|emb|CBI40653.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 74.3 bits (181), Expect = 9.200e-11 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of Spo11269.1 vs. NCBI nr
Match: gi|658042344|ref|XP_008356785.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Malus domestica]) HSP 1 Score: 74.3 bits (181), Expect = 9.200e-11 Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R922_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093190 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 9.500e-31 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1
BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E4W7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g094640 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.300e-16 Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1
BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: F6I6N4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02100 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 6.400e-11 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: A0A067L904_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.100e-10 Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: W9R9T7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012217 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.400e-10 Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
BLAST of Spo11269.1 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 4.500e-10 Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1
BLAST of Spo11269.1 vs. TAIR (Arabidopsis)
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 64.7 bits (156), Expect = 2.600e-11 Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11269.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11269.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo11269.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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