Spo11269 (gene)

Overview
NameSpo11269
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationSpoScf_02677 : 42485 .. 45136 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCGAAAACGGAAACATGGTACGTATCGGAAAATATTATCGGAAATGGAAATATTGCCGGAATCGGAAATATTGCCGGAAACGGAAATATTGTCAGAATCGGAAATATTATCGGAATCGGAAAATAATTCCGGAAACGGAAATATTAAATATTTGTTCGAAACGGAAATTAATTCCGGAATCGGAAATGTTAAATATTGTTCGTATCAGAAATGAAATCCGGAATCGGAAATTTAATTGGAAGCGTATCGTACGAATTAGCATCGGACGAGACTTGCTAGACGAAGGCCCAGCACGAAGCCAGGCCGTCGCCCAGCAAGCCACACGCATCAACACACGCCAAAGTCAGCCAGGGCCAGCGCAAGGCCAGGCCTAGCAAGGCATGGCGCGCGCTCTCAACAAATGGGTTGCGAGCATTGGGCCATGGCGCCGTGCAGCTCGCGTGGGCCGCGAGGCATGCGCGTGGGCTGTGCGTTGCTCGTGGTCGTGCTCGTGCTCGTGTGCATGCTATACGAATCCTAAAGCTATCGGAATTCGTGCTATGATTAAATCCTAATCCTAAAAGATAAAATTAATTATTTAGAGTTTTAAAAGGATTCTAATTAATTAATTAGTATTCTAACAGGATTCGAAATCCTTTTCCATGGTTCTATAAATATATGCCTAGGGTCATAAATTTATACAAGAGTTTTTAACAAGTATTCATACAATAAAAGCTGTGATTTTTGAGCAGAAAAATTAGTCACATTACTTGCCCATTTAGCCGAAAATAATAGTACCTTAAGGGCGATTCTAGTTGGTCAATCTTAAGGCGGATCCGGACGTGCTGTGGACTATCTACGGAGGGACGACACTTGGAGTCCTAAAGACTTGTTCGTGTTCGGTTCGGGCGCAGCTAGGGAGAGCACGCTACAAAGTGTATGCATCTAAATTATGCTAATTGATTATGTGTAAATAATATGTTTCCTGGCATTAAGGTTTTTCCGCATGATTTATGTTTTTCATATGTATCATAACCTAACACTATCAACCTTGGTACCCTACATATTTTTCTCCTAAAAACATTACTCACACTTTCTTTTTCATTTCACCATATTTAATAGATTCGTTTTTTATTGTATTGAATTTTATATTAGTACTTTGAAGCAATTGAAGTATATTGCAATCATGCTTAAAATTTCATTAGTCATATTTATCTATTTAAAAAATATATATATTATTAAAAAAATAATATAAAGAACAATTAAAAAAGAAAAAAATTATTTAGTCAATGTTTATTAGAAAAATATAGAGAGAAAAAATTAACACAATAAAATATTTGTCTAATATTAATAAAGAAATAAAATGTGTCAATGTCCTTAATGGTCATTTTACATATTAAAAAGCTAACAGCTATCAGCTAATTTACCAAACAGTTTTACACAAACAGTTAATTCAACAAGCTAGTCAAATCCGTTAATACAAACAACTAATAGCTAACACCTAGTCAAACCAGCTAACAACTCCTAAACAAACAGGGCCTTAGATTTTGGAACTCACCTTCACACTTGTCGTAGTGTTTTATACTTCCTCTATTCTTATTTATATGACATAATTGTGGTTTTGACACTATTCACACAAGCTCCTTTGATTTCAATTTGTGATTTATTTTTAAGAAAAAACATAGTTGTGTGGGATCTTGTTTGATTCGTCTTAATAAATATTTTTTAAATATCAACTTTTATATTTTTTTTCTTATCCATAATTGAAGATATTAAAGTTTGAAATCATGCATTGACAAGCGTGACTAAATAATTGTGTCATATAAATAAGAACAGAGGAAGTAACATTTATCTCAAATTCTCAATAGTCTAGCCAGTGTAGGCACAAACTTTCTTCAAGACTCCTCTCAGACTCGGAGTGGGGATAATCTCACCCTTCGTCATTGATCTATCTTAAACAGCCCGAGCTCCAACCGGCCGATCCCCTTGATTGGCGAGTAAACATATCAAGGGGTATTTTCGTAAATAAATTATCAAAATATACAATCTACATATTTGAGTATACAATATCTTTTTGTATTAATTTTTTTTTTTTTATAATATCAAATATGTTGTACATTGCAATTTCTAAATTATATATTTGCTAATTGTAATTACAAAAATACCACTTGATATGTCAATCAAGGGATTGTTTTGAAATTTCTCTAAACAGCCCACCTGAAAGAAAGACAGTCTACTTTAGTCTAGTGTGTAGTACTGCTACTGACGCTGCGTTCTCATCGCTACCATTTCTTAAATTCCAACCTCAAAAATCCTGAACTGAAGTTCAAAATAGCTCCCAGTAACGGCAATTATACTCCATTCAATCCAACACTCAAACAAGCAGATTTGCAAGAATTCCCAATAAAACACATCAAATTCATCAATTTACTCCACAAAACAGAGTTAAACTAACAAGTGATGATTTCAATGCAAACCTTATCCCTACCACCTTCACCCACACCAAACCCACCACCATTTTCTCTCTCCAAACCTTCCTTCTCACAGAGAGTCTACATCCCTTCCTATATTTACAAACACCCATCTGCAATTCTCCTCGAAATCTGCACCTCAATTCAAGAACTCCGTCAAATCGTTCCTATTATTTACAAACATGGATTATACGAT

mRNA sequence

ATGTTGCCGAAAACGGAAACATGATTTGCAAGAATTCCCAATAAAACACATCAAATTCATCAATTTACTCCACAAAACAGAGTTAAACTAACAAGTGATGATTTCAATGCAAACCTTATCCCTACCACCTTCACCCACACCAAACCCACCACCATTTTCTCTCTCCAAACCTTCCTTCTCACAGAGAGTCTACATCCCTTCCTATATTTACAAACACCCATCTGCAATTCTCCTCGAAATCTGCACCTCAATTCAAGAACTCCGTCAAATCGTTCCTATTATTTACAAACATGGATTATACGAT

Coding sequence (CDS)

ATGATTTCAATGCAAACCTTATCCCTACCACCTTCACCCACACCAAACCCACCACCATTTTCTCTCTCCAAACCTTCCTTCTCACAGAGAGTCTACATCCCTTCCTATATTTACAAACACCCATCTGCAATTCTCCTCGAAATCTGCACCTCAATTCAAGAACTCCGTCAAATCGTTCCTATTATTTACAAACATGGATTATACGAT

Protein sequence

MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVPIIYKHGLYD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11269.1Spo11269.1mRNA


Homology
BLAST of Spo11269.1 vs. NCBI nr
Match: gi|902208628|gb|KNA15996.1| (hypothetical protein SOVF_093190 [Spinacia oleracea])

HSP 1 Score: 140.2 bits (352), Expect = 1.400e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

		  

Query: 1  MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP 60
          MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP
Sbjct: 1  MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP 60

Query: 61 IIYKHGLYD 70
          IIYKHGLYD
Sbjct: 61 IIYKHGLYD 69

BLAST of Spo11269.1 vs. NCBI nr
Match: gi|731365648|ref|XP_010694640.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-16
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1

		  

Query: 2  ISMQTLSLPPSPTPNPPP-FSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP 61
          ISMQTLSLP S T  P    SLS+P  SQRVYIPS+IYKHP+AILLE+CTSI+EL QI+P
Sbjct: 4  ISMQTLSLPSSSTITPSSQLSLSRPPLSQRVYIPSHIYKHPTAILLELCTSIKELHQIIP 63

Query: 62 IIYKHGLY 69
           IYKH LY
Sbjct: 64 HIYKHNLY 71

BLAST of Spo11269.1 vs. NCBI nr
Match: gi|694366641|ref|XP_009361929.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Pyrus x bretschneideri])

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1

		  

Query: 6  TLSLPPSPTPNP--PPFSLSKP----SFSQRVYIPSYIYKHPSAILLEICTSIQELRQIV 65
          T  LPP PTP+   PP S  K     + SQR +IPS++YKHP+AILLE+CTS+QEL QI+
Sbjct: 19 TPPLPPPPTPSRLRPPVSTPKSQTFHTLSQRTHIPSHVYKHPAAILLELCTSVQELNQII 78

Query: 66 PIIYKHGLYD 70
          P+I K+GLY+
Sbjct: 79 PLIIKNGLYN 88

BLAST of Spo11269.1 vs. NCBI nr
Match: gi|298205132|emb|CBI40653.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 9.200e-11
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1

		  

Query: 2   ISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVPI 61
           I   TL LPP P P+P       PS   R YIPS++YKHPSAILLE+CTS++EL Q +P+
Sbjct: 48  IPTNTLPLPPPPPPSPTSNLHRTPS--SRTYIPSHVYKHPSAILLELCTSMKELHQFIPL 107

Query: 62  IYKHGLY 69
           I K+GLY
Sbjct: 108 IIKNGLY 112

BLAST of Spo11269.1 vs. NCBI nr
Match: gi|658042344|ref|XP_008356785.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Malus domestica])

HSP 1 Score: 74.3 bits (181), Expect = 9.200e-11
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1

		  

Query: 6  TLSLPPSPTPNP----PPFSLSKP----SFSQRVYIPSYIYKHPSAILLEICTSIQELRQ 65
          T  LPP P P P    PP +  K     + SQR +IPS++YKHP+AILLE+CTS QEL Q
Sbjct: 19 TPPLPPPPPPTPSRLRPPIATPKSQTFHTLSQRTHIPSHVYKHPAAILLELCTSXQELNQ 78

Query: 66 IVPIIYKHGLYD 70
          I+P+I K+GLY+
Sbjct: 79 IIPLIIKNGLYN 90

BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R922_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093190 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.500e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

		  

Query: 1  MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP 60
          MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP
Sbjct: 1  MISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP 60

Query: 61 IIYKHGLYD 70
          IIYKHGLYD
Sbjct: 61 IIYKHGLYD 69

BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E4W7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g094640 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.300e-16
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1

		  

Query: 2  ISMQTLSLPPSPTPNPPP-FSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVP 61
          ISMQTLSLP S T  P    SLS+P  SQRVYIPS+IYKHP+AILLE+CTSI+EL QI+P
Sbjct: 4  ISMQTLSLPSSSTITPSSQLSLSRPPLSQRVYIPSHIYKHPTAILLELCTSIKELHQIIP 63

Query: 62 IIYKHGLY 69
           IYKH LY
Sbjct: 64 HIYKHNLY 71

BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: F6I6N4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02100 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.400e-11
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1

		  

Query: 2   ISMQTLSLPPSPTPNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVPI 61
           I   TL LPP P P+P       PS   R YIPS++YKHPSAILLE+CTS++EL Q +P+
Sbjct: 48  IPTNTLPLPPPPPPSPTSNLHRTPS--SRTYIPSHVYKHPSAILLELCTSMKELHQFIPL 107

Query: 62  IYKHGLY 69
           I K+GLY
Sbjct: 108 IIKNGLY 112

BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: A0A067L904_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-10
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1

		  

Query: 2  ISMQTLSLPPSPTPNPPPF-----SLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELR 61
          +S Q L    +PTP   P      S + P+ S+R++IP+YIYKHP+AILLE+CTSI+EL 
Sbjct: 1  MSSQLLPFASTPTPPSSPLYSKTRSSASPTLSKRIHIPAYIYKHPAAILLELCTSIKELH 60

Query: 62 QIVPIIYKHGLYD 70
          QI+P+I K+G Y+
Sbjct: 61 QILPLIIKNGFYN 73

BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Match: W9R9T7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012217 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.400e-10
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1

		  

Query: 1  MISMQTLSLPPSPTPNPPPFSLSKP----SFSQRVYIPSYIYKHPSAILLEICTSIQELR 60
          MIS Q L + PSP P     S S P    + SQR +IPS++YKHP+AILLE+ TS+QELR
Sbjct: 1  MISSQVLPIAPSP-PTKLRLSTSLPGTFHTLSQRTHIPSHVYKHPAAILLELSTSLQELR 60

Query: 61 QIVPIIYKHGLY 69
          QI+P+I K+GLY
Sbjct: 61 QILPLIIKNGLY 71

BLAST of Spo11269.1 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.500e-10
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1

		  

Query: 15 PNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVPIIYKHGLY 69
          PNPP  S  +   S+R YIP+ +Y+HP+A+LLE C+S++ELRQI+P+++K+GLY
Sbjct: 15 PNPP--SRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLY 66

BLAST of Spo11269.1 vs. TAIR (Arabidopsis)
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 2.600e-11
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 1

		  

Query: 15 PNPPPFSLSKPSFSQRVYIPSYIYKHPSAILLEICTSIQELRQIVPIIYKHGLY 69
          PNPP  S  +   S+R YIP+ +Y+HP+A+LLE C+S++ELRQI+P+++K+GLY
Sbjct: 15 PNPP--SRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLY 66

The following BLAST results are available for this feature:
BLAST of Spo11269.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902208628|gb|KNA15996.1|1.4e-30100.hypothetical protein SOVF_0931... [more]
gi|731365648|ref|XP_010694640.1|3.2e-1672.0PREDICTED: pentatricopeptide r... [more]
gi|694366641|ref|XP_009361929.1|1.8e-1157.1PREDICTED: pentatricopeptide r... [more]
gi|298205132|emb|CBI40653.3|9.2e-1156.7unnamed protein product [Vitis... [more]
gi|658042344|ref|XP_008356785.1|9.2e-1154.1PREDICTED: pentatricopeptide r... [more]
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BLAST of Spo11269.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R922_SPIOL9.5e-31100.Uncharacterized protein OS=Spi... [more]
A0A0J8E4W7_BETVU2.3e-1672.0Uncharacterized protein OS=Bet... [more]
F6I6N4_VITVI6.4e-1156.7Putative uncharacterized prote... [more]
A0A067L904_JATCU1.1e-1050.6Uncharacterized protein OS=Jat... [more]
W9R9T7_9ROSA2.4e-1056.9Uncharacterized protein OS=Mor... [more]
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BLAST of Spo11269.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPR32_ARATH4.5e-1053.7Pentatricopeptide repeat-conta... [more]
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BLAST of Spo11269.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G11290.12.6e-1153.7Pentatricopeptide repeat (PPR)... [more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0006457 protein folding
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0044208 'de novo' AMP biosynthetic process
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0015031 protein transport
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0000023 maltose metabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006334 nucleosome assembly
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009156 ribonucleoside monophosphate biosynthetic process
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0009658 chloroplast organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006486 protein glycosylation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009642 response to light intensity
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0042545 cell wall modification
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0019748 secondary metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0009165 nucleotide biosynthetic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009537 proplastid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009509 chromoplast
cellular_component GO:0009501 amyloplast
cellular_component GO:0009507 chloroplast
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0005634 nucleus
cellular_component GO:0009513 etioplast
cellular_component GO:0005840 ribosome
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
molecular_function GO:0070626 (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0004749 ribose phosphate diphosphokinase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
RNA-Seq Expression