Spo11213 (gene)

Overview
NameSpo11213
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 10996699 .. 10999725 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTATTCAAGTGTATGTAGTTAACTTTATTCTATAATTTGTTTCTGTTGATCACCGAAGCCTAATTCTTTTCTCGTTTCCTCTTGATGAGTCATAAAAACAATTGTTTAAGAGAAGTCAACTTGTACAGAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTAAACCATCTAAATCCTTCCATAAATTGATTGAATTAAATTATGATTTAAAATTCCAAACCCTAACTAATTGAATTTCTCTCTCCTCTTGTGGGTGCGCTATCCCTTTGGGTTGCCGGTGCGATGGTGTTCCATCGCCGTTGTCGTATTTTGTTGGAGGTTGATCGGTGTTGATCGTTGTGTTCTTGTTCCTCTCCTCGACTCATCTCCCCTGCTTCACTCCTCTACCTCTCCTCTCCTCCGCTAGACTCACGGAGGGCCACCCCTCGTGGCTCTGCCGGAGCTGCTCCTGCTGCTATTCCGTTGATATTGTTGTTGTGTTATCTGTCTTATGGTTGTTGTTGTTGCTACTTCCCTGCCTCTCTATTTCTCTTATGGGTATAATCTCAAACCCTACTTATTTCTTATTGATGATTTTGTTACCTGGGAAAATGGAAGTCATGTTTAATAAATATAGTAATGATTCCAAATATTTGGTGACTTCACCAGTTATAATTATAAATTTAATATCTTTGCCTTTTGGTTCTAGAAGATGACAGTAATGCCCAATTCTTGTGTGGGGAATCTATTTCCCTATTGTCACTATGTTTTTAACCGTGTTCTGAAATTCACATTTCTCATCCCTGTTTCAACTAAGCTAAAACAGGTTTCCATTTTTTCCCCTCAATTTGTTTGGAATTATTTGGATATGTCACGAGCCTTAAGTAAAAAATCAATGCTACCTGAATTAGAGGTTGTGTTGATGTTAAACCATTTATGCAAGATACCTGAGTTCTAGTGTTCTCTTAAATATGGAATTGGGTTTGGCATCATAAAAAAGGGGTTTGAGTAAGTTCTGCATATGTAACACTACTAGATTTTATACATTTAATGAGAACATATTAAATATGAAAGTATATTATGGCCATTGGTGCTACGTTTGGCTGAAGATTCATCAATTACATTGACTTGACAGCTGAAGATCTTTATGTCGTCGCATTACAAGATTGTAAAAACCCCTGCAAATTAAAATTCCGTAATCTTGAAACAAATTGAGAGATTTCATACCTTCTCATTATTTGAATATATTACAGGAATCAGGCAGAGCAAAGTACTATTTTTAATGGGCAATAATATCCAGCTAGAGACTTTGGTTAGTGTAGATTTGAGGCAGTCGTGAAGGCAGCTAGCAAACATCAACACAACTATGAGGCTATCAACCCAGGTATATGTAAGAAATTATATGAGGCGAATTGCTCAGGAAAAGGTTATCTATGAACCTGTGGCGCCAAATAGTAAGAATAAGGATAAGGGTGTTTAATGTCACCTTGAACTTTTTTGCTCTACAAGCTAAGGATATACTTTCTCCATTTCGAACTTGTACTCTACAATTAATAATCCATTACTTTACTTTACTTTACTTTGTGGGATGCATTAAATTTCAATTTTATGATTTATATGCAAAATTTCTTAGTTTGAAGTTTCTTTGGCTAATTGGTTCATTGATTTTTTGATTAGTAGAGAAATGCGTGCATTATAAGATACAAATAGTTCTTATTTACAAGGTTGCAATAACCAATTAATGAAATATATGAAACTGTGGCATACATATTGTAAAAACATTGTCTGCATGATATGATATGATACTCTATGTACCCTGCAGTATCAGTGACAAATAAACCGTACTTATAATCCCCACATACCTGGTCCAAATGTTAAAAAGTCCATATAATACTTTTTACTCAAGGTTGCTAATTGGTTCATTGTTGATAAAAATGCCTGATAGATAACTTGTTTCTGCGTAGTGAGGTTGAGTTATCTTGTATTTTTGTTGATATTCTTGCTCATAAAATTGTTTCAGTTATTAATCTAAGCTTATAATGTCTTAGGTGTTTGTTAAGCTTTTCCCCCCCTGATATTTGGAAAGTGGTTGATTGCAACTTACACACTACTATAATTAAACTGTCACTTGGTTGATTGCATGTAGTGTTGGTGTTTATATGATTGCCACTTATGTGCTATAGTTACTTTTTCTATATTATTTTATTCTATGATAAATTAAATAGGACATTAGCATAAATTTTATATGGTTGGCCTGATTTCTCTACTGCATGTATCTATTATTAGTGTATTGGTGGATGGTGTTTCTTTTTTATTGTCTGTTGCTCGATTCTATTCTGCTCGTTGTATATCTTGTTCATTTGGCTTTGGTATCTCAGTCTAGGCTGCAACGATTGTGCTCCTGGTGCTCTGTCTTTTGATGTCCTCTTCTGATGGCCTGCTGGTTTGATGTGATGTTGTTTTGTTCTACTAAGTGGTGTTGATTGGTCTACTCCTGCTAATCTGCACTTTGCTGTCGTGTGATCTGCTGTCTTTTCTGCACATTGTTGCTGTTTTTCTTGAAGATTGAAGGCGACCCAAATGAGGAGTTATATGTAGGATGCGGTGTGGTTAGTTTGGATCAAAACTTTGTTAGACCAACGTTAACTTGGTTTGCCTTTGGTTATTTATTTTTTAATTTTTTAGTGGTTTTTGTAGTTTTGGGCTTGTAGGTTGTTGCAAGGCCCTGGGGTTTGATTGGTTGAGCTTGTACAAAAATTGGTTTGTTTTAGTTCATAATATATTTGGAGTTATTAAATTTATGATTTCCATAAAAA

mRNA sequence

ATGAATTATTCAAGTAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTTGATCGGTGTTGATCGTTGTGTTCTTGTTCCTCTCCTCGACTCATCTCCCCTGCTTCACTCCTCTACCTCTCCTCTCCTCCGCTAGACTCACGGAGGGCCACCCCTCGTGGCTCTGCCGGAGCTGCTCCTGCTGCTATTCCGTTGATATTGTTGTTGTGTTATCTGTCTTATGGTTGTTGTTGTTGCTACTTCCCTGCCTCTCTATTTCTCTTATGGGAATCAGGCAGAGCAAAGTACTATTTTTAATGGGCAATAATATCCAGCTAGAGACTTTGGTTAGTGTAGATTTGAGGCAGTCGTGAAGGCAGCTAGCAAACATCAACACAACTATGAGGCTATCAACCCAGTCTAGGCTGCAACGATTGTGCTCCTGGTGCTCTGTCTTTTGATGTCCTCTTCTGATGGCCTGCTGGTTTGATGTGATGTTGTTTTGTTCTACTAAGTGGTGTTGATTGGTCTACTCCTGCTAATCTGCACTTTGCTGTCGTGTGATCTGCTGTCTTTTCTGCACATTGTTGCTGTTTTTCTTGAAGATTGAAGGCGACCCAAATGAGGAGTTATATGTAGGATGCGGTGTGGTTAGTTTGGATCAAAACTTTGTTAGACCAACGTTAACTTGGTTTGCCTTTGGTTATTTATTTTTTAATTTTTTAGTGGTTTTTGTAGTTTTGGGCTTGTAGGTTGTTGCAAGGCCCTGGGGTTTGATTGGTTGAGCTTGTACAAAAATTGGTTTGTTTTAGTTCATAATATATTTGGAGTTATTAAATTTATGATTTCCATAAAAA

Coding sequence (CDS)

ATGAATTATTCAAGTAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTTGATCGGTGTTGA

Protein sequence

MNYSSKLIPFLHLRTTHITSPLPPSCSLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSRRPLQLVDRC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11213.1Spo11213.1mRNA


Homology
[Close]
BLAST of Spo11213.1 vs. NCBI nr
Match: gi|902225970|gb|KNA20247.1| (hypothetical protein SOVF_054270, partial [Spinacia oleracea])

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-6
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 1 

		  

Query: 27 SLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSR 86
          S RR  AS F L GD  S      CCC   S+   LV   SRPSFVMPPPMVAAKPPSSR
Sbjct: 2  SPRRRAASHFHLAGDADSAAEDVRCCCVD-SAAAPLVSPSSRPSFVMPPPMVAAKPPSSR 61

Query: 87 RPLQL 92
            LQL
Sbjct: 62 PHLQL 65
[Close]
BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN32_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_054270 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.000e-6
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 1 

		  

Query: 27 SLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSR 86
          S RR  AS F L GD  S      CCC   S+   LV   SRPSFVMPPPMVAAKPPSSR
Sbjct: 2  SPRRRAASHFHLAGDADSAAEDVRCCCVD-SAAAPLVSPSSRPSFVMPPPMVAAKPPSSR 61

Query: 87 RPLQL 92
            LQL
Sbjct: 62 PHLQL 65
The following BLAST results are available for this feature:
BLAST of Spo11213.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902225970|gb|KNA20247.1|1.4e-660.0hypothetical protein SOVF_0542... [more]
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BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RN32_SPIOL1.0e-660.0Uncharacterized protein (Fragm... [more]
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BLAST of Spo11213.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11213.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0016567 protein ubiquitination
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0030154 cell differentiation
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0009249 protein lipoylation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006546 glycine catabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0005759 mitochondrial matrix
molecular_function GO:0005515 protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression