Spo11133 (gene)

Overview
NameSpo11133
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase II subunit E
LocationSpoScf_02577 : 13146 .. 16396 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCCACCAGTGCTAATATCAAAACAATCGTCTCTCTCGACAAACTCCAATTCGCAATTTGCTCTTCCTCCCGCCTCCTCCTCTTCTTAAAACCCTAACCACTCTTCTCCAACAAAACCACCATCTTTACCACCACTTGTCGGCAGCGCCTCTGCTAACCACCTCTCCTTCGCCGCTTCTCACGGTATGAACTTTCTTTGCTTCTATTCCGTATCGATTGTTTTTGGAATTTTCTGTTGAATTTCATTTGTATTTTCCGACAAGCCTTCAGTCTTATGTGAGGATGATTAGTTTTGCCTGATATGATAGGTTTCAAATTGTTAAATATATTATGTTGGGTTTTTTTGTTCGCAATGTTAAATTGTAAATTTTGAGAAAATTACAATTAAATTACAATCGAAAGTGAAGTTAATAAGTTTCAAATTTAAGCCTGGTTTCAAGTTTCAAATTCCCTTCTTTGTTGATTTTATTTAGAATGTTGTACTTTCTAATTGTCCAATCTGAATATTAAGGTTGTGCAACATTTGTTGAGATTTCGGAATTTGAGAGCGAACAAAATTTAATTGTTTTTGGTTACTTTTGTTACCATGAGAGTCTTAGCTTAGTGTTGTGTGATTGTGAATTGGGTTTGTGACTCCTGCAAATCTGTAAAATTTAGGCTTTTCTTTTATTTAGAGGGAGAACTCGAGCTGAATTTTCGAGCTAGAGGTAGTAGTCTTCATGCTCATTCGTGTTTCTGACTTGGTTGAAGTTAAAAAAGAGTGCGTACACACCTGCATAATGTAGTTCCCTGGGGATCATCCTACCGAATTAGGAATTCATCATCGAAATAGGAGTTAGCATTTAGGCTATGTTATATTCGACTTATTTTGTCTAAATAAACTTAATTGTGTGTTAAAATGTCTGAAAAAAACTTGTTTTTTCTGAACTTATATTATTTGAACTTAACTGAACTTATTTTGTCTAAAATAATTCAAAATATGTTGAGCAGAATAGAGCCTTGGTATTCTTGTCGTACAAGTAAAGTTCTCATGATTTTTACCCTTTGGGTCAATAATTTGGATATATAGGGTCACAATAGGAGATATATAGGGTCTTAGCCTCTTAAATGTTAAGATTTGGAGAAGACCACGGATGTAAAGGGTTGAAAGGGATATCCTAGCAAGGGCGGTAGATATAAGAACTCTCTTGTGTCAAAATTACTGAAATGAGAGTTTGATGAAGTTATCTACTCCACCTTTTTTCTCCTTTATGAAATGGTAGAAAATGATTTCGAGGGTCCTTTCTTGCAGATATCAGTGGAATGGCTTCCTCAGATGAAGAGATAACTAGACTGTACAGAATTCAGAGGACAATAATGCAAATGTTGAATGACAGAGGTTATATTGTGGCTGATCATGAGCTCAATATGACGAAACAGCAGTTTCTTAGTAGATATGGTGAGTATTTGAAGAGGGATGCCCTTTCTATCCAAAAAACCAAACGCAATGATAGCTCTGAACAGGTATTCCTCAAATTGTGTACCTTTCTCATGGCAAATAATACAGGCATATCCAAATATCCTCTTTTGTTCTGTCTTAATTCTAAAACTAGCAATTGGCGTTTTTACTCTGTTGCAGATATATGTTTTCTTCCCTGATGAGCCGAAGGTTGGTGTTAAAACAATAAAGCATTACACCAATACTATGAAAAATGAAAATGTGTCTAGAGCAATTTTGGTGGTCCAACAGAACTTGACTCCTTTCGCAAAGACTTGCATCAGTGAAATTTCTGGCAAATTCCACGTGGAGGTTTTCCAGGTTAATATCAGCCTCTTTATTGGTTCAGTTCATTGCACCAACTCATTATTATAGAGCTCTGTACTAAAGTAGTCGGATGCTAATCTGTTGATATATTCATAGTAGTTGGGTCAGGAGACTCGGGACTATAAATCTACTTTCCATTATTGCTAATTGTTGAATGATAGCATAGATTATTTCAACTCTTGTCCTATCCGTGACGCAAATGTTTTTGTTAGGTAAAGGGTCTTAATAGTATAATTATTAGCTTGTACCTTGTATGAGGAACTTTTTCTATCTACCCACGCTGTGATGAATTGATGATCTTATGGTTGTTTGCTGGTACACTAAGGTCCTAGTGGAGTTTTCTGTGATAGTTCATGTTTGGGCTTCTTTTATGAAAAAACTGTCTAGATTGCGTAACGTGTTTGTTTCTGCTTTTCAGGAGGCAGAGATGTTGGTTAACATCAAGGAGCATGTTCTTGTTCCTGAGCATCAATTGCTAAATGATGAAGAAAAGAAGACCCTGCTCCAAAGGTACACCGTCAAGGAAACTCAGGTCAGTACATTATTTCATGCTAATTTATTTTTACGTCTCCTTCGCTACTGCTAGATTGTGATCTTAGCATTCGCAAACCCTGGAAATATATACTGTTCTTTCTTTCCCACAATAATTTCTCCTATTTCAAGTGACCTAGAGTTTTTATTTTTTGGGGTATGCTTCTTGTTGAAATATAATTCCGGAAAGACAGTAAAATAGTCTGATAGTAGATTGGTAGTTGTGGCGATTTGAGATTGAGAGTGATGGTGTTCTTGGGCCAAAGAAGCAGAATCCCTTCTAGTCCTAGGGATGCAAGATTATGCAAATTTTAACCATTGTGTAAACTTCTTCTAGTCCATTGACTCACGATTTATATTCTAATATGCAATTGCTCTCTGTAAAAGAGTTCATCCCCATGAACTAGTGACATCAGAACTATTTGGCCTCACTTTTGTAAACTAAAAATGCTAGTGTTTCATTTTCTGGAATGATATTAGTGTTTCATTTTCCCCCATATTTGTTATCCTTCTCCCGGTCCTTAAATTCTTTGTTTGTTTACCTTTTTGTTCAGCTACCAAGAATTCAGATGAATGATCCAGTTGCAAGATATTACGGACTTAAGCGTGGACAAGTTGTGAAGATTATTCGTCCTAGTGAAACCGCTGGAAGATATGTCACATATCGATATGTTGTATGATTTAGGCCATCTACACTAACGTATACCGAACTCTGGTGTCCCCTGTTTTTTCTTGAGAAATTGTATTGTAGTATTTGAGGAGAAGAAACCATCTAGGGCATTGTATGGTTGTTTTTGTCTATTTTGGAATACAAGTGTTCGGAAGTTATACCTCTGGCTCTTGCAATGCGAGTAACAATCAATCGCCCTTGCTTTATTTTTACCACTTAAGGATATAAGTTTACACTGTTTAAAG

mRNA sequence

TTGCCACCAGTGCTAATATCAAAACAATCGTCTCTCTCGACAAACTCCAATTCGCAATTTGCTCTTCCTCCCGCCTCCTCCTCTTCTTAAAACCCTAACCACTCTTCTCCAACAAAACCACCATCTTTACCACCACTTGTCGGCAGCGCCTCTGCTAACCACCTCTCCTTCGCCGCTTCTCACGATATCAGTGGAATGGCTTCCTCAGATGAAGAGATAACTAGACTGTACAGAATTCAGAGGACAATAATGCAAATGTTGAATGACAGAGGTTATATTGTGGCTGATCATGAGCTCAATATGACGAAACAGCAGTTTCTTAGTAGATATGGTGAGTATTTGAAGAGGGATGCCCTTTCTATCCAAAAAACCAAACGCAATGATAGCTCTGAACAGATATATGTTTTCTTCCCTGATGAGCCGAAGGTTGGTGTTAAAACAATAAAGCATTACACCAATACTATGAAAAATGAAAATGTGTCTAGAGCAATTTTGGTGGTCCAACAGAACTTGACTCCTTTCGCAAAGACTTGCATCAGTGAAATTTCTGGCAAATTCCACGTGGAGGTTTTCCAGGAGGCAGAGATGTTGGTTAACATCAAGGAGCATGTTCTTGTTCCTGAGCATCAATTGCTAAATGATGAAGAAAAGAAGACCCTGCTCCAAAGGTACACCGTCAAGGAAACTCAGCTACCAAGAATTCAGATGAATGATCCAGTTGCAAGATATTACGGACTTAAGCGTGGACAAGTTGTGAAGATTATTCGTCCTAGTGAAACCGCTGGAAGATATGTCACATATCGATATGTTGTATGATTTAGGCCATCTACACTAACGTATACCGAACTCTGGTGTCCCCTGTTTTTTCTTGAGAAATTGTATTGTAGTATTTGAGGAGAAGAAACCATCTAGGGCATTGTATGGTTGTTTTTGTCTATTTTGGAATACAAGTGTTCGGAAGTTATACCTCTGGCTCTTGCAATGCGAGTAACAATCAATCGCCCTTGCTTTATTTTTACCACTTAAGGATATAAGTTTACACTGTTTAAAG

Coding sequence (CDS)

ATGGCTTCCTCAGATGAAGAGATAACTAGACTGTACAGAATTCAGAGGACAATAATGCAAATGTTGAATGACAGAGGTTATATTGTGGCTGATCATGAGCTCAATATGACGAAACAGCAGTTTCTTAGTAGATATGGTGAGTATTTGAAGAGGGATGCCCTTTCTATCCAAAAAACCAAACGCAATGATAGCTCTGAACAGATATATGTTTTCTTCCCTGATGAGCCGAAGGTTGGTGTTAAAACAATAAAGCATTACACCAATACTATGAAAAATGAAAATGTGTCTAGAGCAATTTTGGTGGTCCAACAGAACTTGACTCCTTTCGCAAAGACTTGCATCAGTGAAATTTCTGGCAAATTCCACGTGGAGGTTTTCCAGGAGGCAGAGATGTTGGTTAACATCAAGGAGCATGTTCTTGTTCCTGAGCATCAATTGCTAAATGATGAAGAAAAGAAGACCCTGCTCCAAAGGTACACCGTCAAGGAAACTCAGCTACCAAGAATTCAGATGAATGATCCAGTTGCAAGATATTACGGACTTAAGCGTGGACAAGTTGTGAAGATTATTCGTCCTAGTGAAACCGCTGGAAGATATGTCACATATCGATATGTTGTATGA

Protein sequence

MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTKRNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGKFHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11133.1Spo11133.1mRNA


Homology
[Close]
BLAST of Spo11133.1 vs. NCBI nr
Match: gi|902203286|gb|KNA14511.1| (hypothetical protein SOVF_106950 [Spinacia oleracea])

HSP 1 Score: 404.1 bits (1037), Expect = 1.500e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK
Sbjct: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK
Sbjct: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG
Sbjct: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. NCBI nr
Match: gi|731358009|ref|XP_010690512.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 375.9 bits (964), Expect = 4.400e-101
Identity = 188/206 (91.26%), Postives = 201/206 (97.57%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M +S+EEITRLYRIQRTIMQMLNDRGYIVADHELNM+KQ+F+ +YGE+LKRDALSIQKT+
Sbjct: 1   MGTSEEEITRLYRIQRTIMQMLNDRGYIVADHELNMSKQKFIDKYGEHLKRDALSIQKTR 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RNDSS+QIYVFFP+EPKVGVKTIK+Y N MKNENV+RAILVVQQNLTPFAKTCISEIS K
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTIKNYANIMKNENVTRAILVVQQNLTPFAKTCISEISSK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. NCBI nr
Match: gi|596006148|ref|XP_007218418.1| (hypothetical protein PRUPE_ppa011542mg [Prunus persica])

HSP 1 Score: 326.2 bits (835), Expect = 4.000e-86
Identity = 158/206 (76.70%), Postives = 186/206 (90.29%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M   +EEITRLYR+++T+MQML DR Y+V D E+NMT++QF S+YGE +KR+ L+I KTK
Sbjct: 1   MVYPEEEITRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTK 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           R+DSS+QIYVFFP+EPKVGVKT+K YTN MK+ENV RA+LV QQNLTPFAKTCISEIS K
Sbjct: 61  RSDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQEAE+LVNIKEHVLVPEH +L  EEKKTLL+RYTVKETQLPRIQ+ DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLPRIQVTDPIAKYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRY+TYRYV+
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVI 206
[Close]
BLAST of Spo11133.1 vs. NCBI nr
Match: gi|567918418|ref|XP_006451215.1| (hypothetical protein CICLE_v10009504mg [Citrus clementina])

HSP 1 Score: 326.2 bits (835), Expect = 4.000e-86
Identity = 162/206 (78.64%), Postives = 185/206 (89.81%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M  SDEEI RL+RI+RT+MQML DRGY V D E+NM+K+QF++++GE +KR+ L I K  
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RNDSS+QIYVFFPDE KVGVKT+K YTN MK+ENV RAILVVQQNLTPFA+TCI EIS K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQEAE+LVNIKEHVLVPEHQ+L +EEKKTLL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. NCBI nr
Match: gi|590576968|ref|XP_007013104.1| (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 326.2 bits (835), Expect = 4.000e-86
Identity = 160/206 (77.67%), Postives = 186/206 (90.29%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M  SD+EI RL+RI++T+MQML DRGY V D E+ MTK QF+S+YGE +KR+ L I KTK
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RND+S+QIYVFFPDE KVGVKT+K YTN MK+ENV RA+LVVQQNLTPFA+TCI+EIS K
Sbjct: 61  RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQE+E+LVN+KEH LVPEHQ+L +EEKKTLLQRYTVKETQLPRIQ++DP+ARYYG
Sbjct: 121 FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4T7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106950 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.000e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK
Sbjct: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK
Sbjct: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG
Sbjct: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EEY3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g215190 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.100e-101
Identity = 188/206 (91.26%), Postives = 201/206 (97.57%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M +S+EEITRLYRIQRTIMQMLNDRGYIVADHELNM+KQ+F+ +YGE+LKRDALSIQKT+
Sbjct: 1   MGTSEEEITRLYRIQRTIMQMLNDRGYIVADHELNMSKQKFIDKYGEHLKRDALSIQKTR 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RNDSS+QIYVFFP+EPKVGVKTIK+Y N MKNENV+RAILVVQQNLTPFAKTCISEIS K
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTIKNYANIMKNENVTRAILVVQQNLTPFAKTCISEISSK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. UniProtKB/TrEMBL
Match: A0A061GMW8_THECC (Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1 OS=Theobroma cacao GN=TCM_037836 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-86
Identity = 160/206 (77.67%), Postives = 186/206 (90.29%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M  SD+EI RL+RI++T+MQML DRGY V D E+ MTK QF+S+YGE +KR+ L I KTK
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RND+S+QIYVFFPDE KVGVKT+K YTN MK+ENV RA+LVVQQNLTPFA+TCI+EIS K
Sbjct: 61  RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQE+E+LVN+KEH LVPEHQ+L +EEKKTLLQRYTVKETQLPRIQ++DP+ARYYG
Sbjct: 121 FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. UniProtKB/TrEMBL
Match: V4UJN2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009504mg PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-86
Identity = 162/206 (78.64%), Postives = 185/206 (89.81%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M  SDEEI RL+RI+RT+MQML DRGY V D E+NM+K+QF++++GE +KR+ L I K  
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           RNDSS+QIYVFFPDE KVGVKT+K YTN MK+ENV RAILVVQQNLTPFA+TCI EIS K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQEAE+LVNIKEHVLVPEHQ+L +EEKKTLL+RYTVKETQLPRIQ+ DP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
[Close]
BLAST of Spo11133.1 vs. UniProtKB/TrEMBL
Match: M5X0L0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011542mg PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-86
Identity = 158/206 (76.70%), Postives = 186/206 (90.29%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           M   +EEITRLYR+++T+MQML DR Y+V D E+NMT++QF S+YGE +KR+ L+I KTK
Sbjct: 1   MVYPEEEITRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTK 60

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGK 120
           R+DSS+QIYVFFP+EPKVGVKT+K YTN MK+ENV RA+LV QQNLTPFAKTCISEIS K
Sbjct: 61  RSDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSK 120

Query: 121 FHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYG 180
           FH+EVFQEAE+LVNIKEHVLVPEH +L  EEKKTLL+RYTVKETQLPRIQ+ DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLPRIQVTDPIAKYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKIIRPSETAGRY+TYRYV+
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVI 206
[Close]
BLAST of Spo11133.1 vs. ExPASy Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.200e-87
Identity = 158/203 (77.83%), Postives = 183/203 (90.15%), Query Frame = 1 

		  

Query: 4   SDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTKRND 63
           ++EE+ RLYRIQ+T+MQML DRGY +AD EL MTKQQF+ ++G+ +KR+ L   K KRND
Sbjct: 3   TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRND 62

Query: 64  SSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGKFHV 123
           +S+Q+Y+FFPDE KVGVKT+K YTN MK+ENV RAILVVQQNLTPFA+TCISEIS KFH+
Sbjct: 63  NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHL 122

Query: 124 EVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYGLKR 183
           EVFQEAEMLVNIKEHVLVPEHQ+L  EEKKTLL+RYTVKETQLPRIQ+ DP+ARY+GLKR
Sbjct: 123 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 182

Query: 184 GQVVKIIRPSETAGRYVTYRYVV 207
           GQVVKIIRPSETAGRYVTYRYVV
Sbjct: 183 GQVVKIIRPSETAGRYVTYRYVV 205
[Close]
BLAST of Spo11133.1 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.800e-55
Identity = 106/206 (51.46%), Postives = 154/206 (74.76%), Query Frame = 1 

		  

Query: 5   DEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYL-----KRDALSIQKT 64
           +EE  RL++I++TIMQ+ +DRGY+V   EL+ T ++F +++G+       +R  L++   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISG 124
             +D ++Q++VFFP+EPKVG+KTIK Y   M+ EN++RA++VVQQ +TP AK  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYY 184
           K+ +E F + E+L+NI EH LVPEH ++  EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
[Close]
BLAST of Spo11133.1 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.800e-55
Identity = 106/206 (51.46%), Postives = 154/206 (74.76%), Query Frame = 1 

		  

Query: 5   DEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYL-----KRDALSIQKT 64
           +EE  RL++I++TIMQ+ +DRGY+V   EL+ T ++F +++G+       +R  L++   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISG 124
             +D ++Q++VFFP+EPKVG+KTIK Y   M+ EN++RA++VVQQ +TP AK  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYY 184
           K+ +E F + E+L+NI EH LVPEH ++  EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
[Close]
BLAST of Spo11133.1 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.200e-55
Identity = 106/206 (51.46%), Postives = 153/206 (74.27%), Query Frame = 1 

		  

Query: 5   DEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYL-----KRDALSIQKT 64
           +EE  RL++I++TIMQ+ +DRGY+V   EL+ T ++F +++G+       +R  L++   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISG 124
             +D ++Q++VFFP+EPKVG+KTIK Y   M+ EN++RA++VVQQ +TP AK  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYY 184
           K+ +E F + E+L+NI EH LVPEH ++  EE   LL RY ++E QLPRIQ  DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
[Close]
BLAST of Spo11133.1 vs. ExPASy Swiss-Prot
Match: RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-54
Identity = 113/203 (55.67%), Postives = 146/203 (71.92%), Query Frame = 1 

		  

Query: 6   EEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTKRNDSS 65
           E+I RL +I++T++QML+DR YI+  +E    ++ F+SR       + L++   K++D +
Sbjct: 2   EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVSR-------ENLTMYCVKKDDPT 61

Query: 66  EQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISG--KFHV 125
           + IYVFFPD PKVGV  IK Y + MK+   +RAI+VVQQN+TPFAK  ++E S   K  +
Sbjct: 62  DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 121

Query: 126 EVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYGLKR 185
           E F EAE+LVNI  H LVP+H LL  EEK  LL RY +KE+QLPRIQ NDPVARYYGL R
Sbjct: 122 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSR 181

Query: 186 GQVVKIIRPSETAGRYVTYRYVV 207
           G VVKI+RPSETAGRY+TYR  V
Sbjct: 182 GHVVKIVRPSETAGRYITYRLCV 197
[Close]
BLAST of Spo11133.1 vs. TAIR (Arabidopsis)
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 321.6 bits (823), Expect = 3.500e-88
Identity = 158/203 (77.83%), Postives = 183/203 (90.15%), Query Frame = 1 

		  

Query: 4   SDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTKRND 63
           ++EE+ RLYRIQ+T+MQML DRGY +AD EL MTKQQF+ ++G+ +KR+ L   K KRND
Sbjct: 3   TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRND 62

Query: 64  SSEQIYVFFPDEPKVGVKTIKHYTNTMKNENVSRAILVVQQNLTPFAKTCISEISGKFHV 123
           +S+Q+Y+FFPDE KVGVKT+K YTN MK+ENV RAILVVQQNLTPFA+TCISEIS KFH+
Sbjct: 63  NSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHL 122

Query: 124 EVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYGLKR 183
           EVFQEAEMLVNIKEHVLVPEHQ+L  EEKKTLL+RYTVKETQLPRIQ+ DP+ARY+GLKR
Sbjct: 123 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 182

Query: 184 GQVVKIIRPSETAGRYVTYRYVV 207
           GQVVKIIRPSETAGRYVTYRYVV
Sbjct: 183 GQVVKIIRPSETAGRYVTYRYVV 205
[Close]
BLAST of Spo11133.1 vs. TAIR (Arabidopsis)
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 185.3 bits (469), Expect = 3.900e-47
Identity = 94/210 (44.76%), Postives = 147/210 (70.00%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKR---DALSIQ 60
           M+  D+EITR+++++RT++QML DRGY + + +LN+ +++F+ R+ + + +   +AL + 
Sbjct: 1   MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60

Query: 61  KTKRNDSSEQIYVFFPDEPKVGVKTIK-HYTNTMKNENVSRAILVVQQNLTPFAKTCISE 120
             K  + +++IYVF+P+ PKVGV  IK      M+++ V R I+VV   +T  A+  +SE
Sbjct: 61  ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120

Query: 121 ISGKFHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVA 180
           ++    +EVF+EAE++ NI EH LV ++ +L+D+ KK LL  YTV++TQLPRI + DP+A
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLA 180

Query: 181 RYYGLKRGQVVKIIRPSETAGRYVTYRYVV 207
           RYYGLKRGQVVKI R   T+  Y TYR+ V
Sbjct: 181 RYYGLKRGQVVKIRRSDATSLDYYTYRFAV 210
[Close]
BLAST of Spo11133.1 vs. TAIR (Arabidopsis)
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 152.5 bits (384), Expect = 2.800e-37
Identity = 84/206 (40.78%), Postives = 132/206 (64.08%), Query Frame = 1 

		  

Query: 1   MASSDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTK 60
           ++ S  E  + Y  +RT M+ML DRGY V+D ++N++ QQF + YGE+   D L I    
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 61  RNDSSEQIYVFFPDEPKVGVKTIKHYT-NTMKNENVSRAILVVQQNLTPFAKTCISEISG 120
           R DSS++I V F     V V  ++    + +  EN++  ILV+Q ++T  A   +   S 
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS- 133

Query: 121 KFHVEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYY 180
            F VE+F+  ++LVN+ +HVL P+HQ+LND+EK++LL++++++E QLPR+   DP+ RYY
Sbjct: 134 -FKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYY 193

Query: 181 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           GL+ GQV+K+    E +  +VTYR V
Sbjct: 194 GLETGQVMKVTYKDELSESHVTYRCV 217
[Close]
BLAST of Spo11133.1 vs. TAIR (Arabidopsis)
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 143.7 bits (361), Expect = 1.300e-34
Identity = 83/203 (40.89%), Postives = 123/203 (60.59%), Query Frame = 1 

		  

Query: 4   SDEEITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTKRND 63
           S EE  R Y  +R  +QML DRGY V+D ++N++   F + YGE    D L I    R+D
Sbjct: 21  SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80

Query: 64  SSEQIYVFFPDEPKVGVKTIKHYT-NTMKNENVSRAILVVQQNLTPFAKTCISEISGKFH 123
           S++++ + F     V V  I+    + +  E ++  ILV+Q ++T  A   I   S  F 
Sbjct: 81  STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 140

Query: 124 VEVFQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYGLK 183
           VE+FQ  ++LVNI +H L P+HQ+LNDEEK TLL++++++E QLPRI   D + RYYGL+
Sbjct: 141 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLE 200

Query: 184 RGQVVKIIRPSETAGRYVTYRYV 206
           +GQVVK+    E    +V +R V
Sbjct: 201 KGQVVKVNYRGELTESHVAFRCV 221
[Close]
BLAST of Spo11133.1 vs. TAIR (Arabidopsis)
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 122.1 bits (305), Expect = 4.000e-28
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 1 

		  

Query: 7   EITRLYRIQRTIMQMLNDRGYIVADHELNMTKQQFLSRYGEYLKRDALSIQKTKRNDSSE 66
           E  R Y  + T  +ML DRGY V + EL++T  +F S +GE  + + L I    R+D  +
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPDEPKVGVKTIKH-YTNTMKNENVSRAILVVQQNLTPFAKTCISEISGKFHVEV 126
           +I V F     + VK+++  +     N  +   ILV+Q  +  FA+  ++     F VE 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFP--FTVET 154

Query: 127 FQEAEMLVNIKEHVLVPEHQLLNDEEKKTLLQRYTVKETQLPRIQMNDPVARYYGLKRGQ 186
           F   ++LVNI +H+  P+ ++LN EEK+ LL+++ +++ QLP +Q  D   RYYGLK+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 187 VVKIIRPSETAGRYVTYRYVV 207
           VVKI    E  G +VTYR ++
Sbjct: 215 VVKITYSKEPVGDFVTYRCII 233
The following BLAST results are available for this feature:
BLAST of Spo11133.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203286|gb|KNA14511.1|1.5e-109100.hypothetical protein SOVF_1069... [more]
gi|731358009|ref|XP_010690512.1|4.4e-10191.2PREDICTED: DNA-directed RNA po... [more]
gi|596006148|ref|XP_007218418.1|4.0e-8676.7hypothetical protein PRUPE_ppa... [more]
gi|567918418|ref|XP_006451215.1|4.0e-8678.6hypothetical protein CICLE_v10... [more]
gi|590576968|ref|XP_007013104.1|4.0e-8677.6Eukaryotic rpb5 RNA polymerase... [more]
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BLAST of Spo11133.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R4T7_SPIOL1.0e-109100.Uncharacterized protein OS=Spi... [more]
A0A0J8EEY3_BETVU3.1e-10191.2Uncharacterized protein OS=Bet... [more]
A0A061GMW8_THECC2.8e-8677.6Eukaryotic rpb5 RNA polymerase... [more]
V4UJN2_9ROSI2.8e-8678.6Uncharacterized protein OS=Cit... [more]
M5X0L0_PRUPE2.8e-8676.7Uncharacterized protein OS=Pru... [more]
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BLAST of Spo11133.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPB5A_ARATH6.2e-8777.8DNA-directed RNA polymerases I... [more]
RPAB1_RAT4.8e-5551.4DNA-directed RNA polymerases I... [more]
RPAB1_MOUSE4.8e-5551.4DNA-directed RNA polymerases I... [more]
RPAB1_PONAB6.2e-5551.4DNA-directed RNA polymerases I... [more]
RPAB1_DICDI1.1e-5455.6DNA-directed RNA polymerases I... [more]
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BLAST of Spo11133.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G22320.13.5e-8877.8Eukaryotic rpb5 RNA polymerase... [more]
AT5G57980.13.9e-4744.7RNA polymerase II fifth larges... [more]
AT2G41340.12.8e-3740.7RNA polymerase II fifth larges... [more]
AT3G57080.11.3e-3440.8Eukaryotic rpb5 RNA polymerase... [more]
AT3G54490.14.0e-2836.3RNA polymerase II fifth larges... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPRODOMPD005155coord: 140..205
score: 9.0
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalGENE3D3.90.940.20coord: 134..206
score: 4.7
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 133..205
score: 6.5
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalunknownSSF55287RPB5-like RNA polymerase subunitcoord: 131..206
score: 3.01
IPR005571RNA polymerase, Rpb5, N-terminalGENE3D3.40.1340.10coord: 3..133
score: 1.5
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 6..90
score: 1.7
IPR005571RNA polymerase, Rpb5, N-terminalunknownSSF53036Eukaryotic RPB5 N-terminal domaincoord: 5..134
score: 6.93
IPR014381DNA-directed RNA polymerase RPB5 subunit, eukaryote/virusPIRPIRSF000747RPB5coord: 1..206
score: 3.6
IPR020608RNA polymerase, subunit H/Rpb5, conserved sitePROSITEPS01110RNA_POL_H_23KDcoord: 138..151
scor
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 133..206
score: 22
NoneNo IPR availablePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 3..206
score: 9.6E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051604 protein maturation
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006508 proteolysis
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0009507 chloroplast
cellular_component GO:0005736 DNA-directed RNA polymerase I complex
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0000418 DNA-directed RNA polymerase IV complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005768 endosome
cellular_component GO:0016020 membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005773 vacuole
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004046 aminoacylase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0001056 RNA polymerase III activity
molecular_function GO:0001055 RNA polymerase II activity
molecular_function GO:0001054 RNA polymerase I activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
RNA-Seq Expression