Spo10762 (gene)

Overview
NameSpo10762
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPectin lyase-like protein
Locationchr1 : 41261263 .. 41262564 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCAACTCTTCCACTAGTGTAGCTGATACTTTGGTATATTGTGTTAGATTATGGGAGAGTGTGATCTGTAGCTCCATCTTCATGGTCCTTTTACTTTCCGTTGTTGCACCTGAAAGAAGCTATTAAGGAATCGCTTCTGTACAAGAAATCTGAAACTCAATTCACAAGCAAGGAAGTTATGCCTAAGAAAAAGCAAGCTTAGTTAAGCAAAGAATCTCAAATGCTGTACTGATATAGTGTTACCCTTCCCTCTCTAATACTACAGCAGTTCTGCTCTGATGATTGAATAAAATAGCACTTTGGTCAAGAATCCATGTGCTTACTAATTTAAGCTCCTAGATAATGATTAATATAGGAAAGCAAGGAAACTCCAGCTGAAATAGACCTTTTTATAGCATTTCCTTTGAAAAGGGAAAGCGTGTTTTTGCTTCTTTTTTCTTCATTTTATTAAGGTCGAAAAGGTATCCATTCAATGGAAGCAAGAATTTATGTAATGATGTGTCTTTCTTTCGTTTTTCTTCTTTCCATATTTTAACTTTCCCCCTTTTCTAGTTTATGATCACATGATCAAGTTGCCTAATCTTTTCTTGATTTCCTTTTGGTTTTTCAGTCGACTGCTGTGCAAATTAGTCAGGTGATGTACCGGAATATTACTGGAACTACAAAGAGCAAAGAAGCCATGAAGTTTGCTTGCAGCGACTCGGTTCCTTGCAGGAACATTGTTCTCTCTAATATTGACTTGCACAAGAAGGATGGCACAGCAGAGACATACTGTAACTCTGTTACTGGTTTTGGTTTCGGAACAATCAATCCCTCAGCTGATTGCCTTACCTCCAATGACAAAGATTATTCCAATCCTGATGACATGAAAATTTCCCAACTCGGGGAATCGATTGAAGATCACATAGTTCATACAGAGCTGTGATTTTGCTTCCATCATATTATTATAGGTACTAATATAGCAGCTTAGTAATGGGTTTATTAAACTCAAATGGTATTTTAAATGATGTAGAATACATACTTTAGGGAAAGGTGTTAGTTCCATTTCTAAAATTTTAAGTTTTCCTATTTTCTTTTTCTGATTTGGATTGTAATGATGCAATAGCAATATCTTATTTGTAATTGATTGTTATTATTGAAGCATTATTGAAAGATTGTGTTATTGAATTTGTTGGTGAGAATGAAAATTTATCGCTTCAATCGTAGTTCAACTTATGTAGCACAAATTCACAAAAGCTGTATGTATATCAAGGGTTTGTTGTGAGAATAGTGAAACATCCGGGGACTTGAGGCCAG

mRNA sequence

ATGAAAACCAACTCTTCCACTAGTGTAGCTGATACTTTGTCGACTGCTGTGCAAATTAGTCAGGTGATGTACCGGAATATTACTGGAACTACAAAGAGCAAAGAAGCCATGAAGTTTGCTTGCAGCGACTCGGTTCCTTGCAGGAACATTGTTCTCTCTAATATTGACTTGCACAAGAAGGATGGCACAGCAGAGACATACTGTAACTCTGTTACTGGTTTTGGTTTCGGAACAATCAATCCCTCAGCTGATTGCCTTACCTCCAATGACAAAGATTATTCCAATCCTGATGACATGAAAATTTCCCAACTCGGGGAATCGATTGAAGATCACATAGTTCATACAGAGCTGTGATTTTGCTTCCATCATATTATTATAGGTACTAATATAGCAGCTTAGTAATGGGTTTATTAAACTCAAATGGTATTTTAAATGATGTAGAATACATACTTTAGGGAAAGGTGTTAGTTCCATTTCTAAAATTTTAAGTTTTCCTATTTTCTTTTTCTGATTTGGATTGTAATGATGCAATAGCAATATCTTATTTGTAATTGATTGTTATTATTGAAGCATTATTGAAAGATTGTGTTATTGAATTTGTTGGTGAGAATGAAAATTTATCGCTTCAATCGTAGTTCAACTTATGTAGCACAAATTCACAAAAGCTGTATGTATATCAAGGGTTTGTTGTGAGAATAGTGAAACATCCGGGGACTTGAGGCCAG

Coding sequence (CDS)

ATGAAAACCAACTCTTCCACTAGTGTAGCTGATACTTTGTCGACTGCTGTGCAAATTAGTCAGGTGATGTACCGGAATATTACTGGAACTACAAAGAGCAAAGAAGCCATGAAGTTTGCTTGCAGCGACTCGGTTCCTTGCAGGAACATTGTTCTCTCTAATATTGACTTGCACAAGAAGGATGGCACAGCAGAGACATACTGTAACTCTGTTACTGGTTTTGGTTTCGGAACAATCAATCCCTCAGCTGATTGCCTTACCTCCAATGACAAAGATTATTCCAATCCTGATGACATGAAAATTTCCCAACTCGGGGAATCGATTGAAGATCACATAGTTCATACAGAGCTGTGA

Protein sequence

MKTNSSTSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10762.1Spo10762.1mRNA


Homology
[Close]
BLAST of Spo10762.1 vs. NCBI nr
Match: gi|902156880|gb|KNA06047.1| (hypothetical protein SOVF_184640 [Spinacia oleracea])

HSP 1 Score: 212.2 bits (539), Expect = 4.800e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG 73
           STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG
Sbjct: 7   STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG 66

Query: 74  FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
           FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL
Sbjct: 67  FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 110
[Close]
BLAST of Spo10762.1 vs. NCBI nr
Match: gi|731342707|ref|XP_010682531.1| (PREDICTED: probable polygalacturonase At1g80170 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 193.0 bits (489), Expect = 3.000e-46
Identity = 92/104 (88.46%), Postives = 99/104 (95.19%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG 73
           +TAVQISQVMYRNITGTT SKEAMKFACSD+ PCRNIVL+NIDLHKKDGTAETYCNSVTG
Sbjct: 361 TTAVQISQVMYRNITGTTSSKEAMKFACSDAFPCRNIVLTNIDLHKKDGTAETYCNSVTG 420

Query: 74  FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
           FGFGTINP ADCLTSNDKDYS+PD+MKISQ+ ES EDH+VHTEL
Sbjct: 421 FGFGTINPPADCLTSNDKDYSSPDEMKISQIKESTEDHLVHTEL 464
[Close]
BLAST of Spo10762.1 vs. NCBI nr
Match: gi|728842873|gb|KHG22316.1| (hypothetical protein F383_04489 [Gossypium arboreum])

HSP 1 Score: 154.5 bits (389), Expect = 1.200e-34
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1 

		  

Query: 2   KTNSSTSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKD 61
           +T +   +    ++AVQISQ+MYRNI+GTTKSKEAMKFACSD+ PC NIVLSNI+L KKD
Sbjct: 307 ETTNGVRIKTWQTSAVQISQIMYRNISGTTKSKEAMKFACSDTTPCSNIVLSNINLEKKD 366

Query: 62  GTAETYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
           GTAETYCNS  GFG+G ++PSADCL+SNDK Y   D  + S+L E   DHIVHTEL
Sbjct: 367 GTAETYCNSAQGFGYGIVHPSADCLSSNDKGYILIDHKENSELAEPSRDHIVHTEL 422
[Close]
BLAST of Spo10762.1 vs. NCBI nr
Match: gi|823159084|ref|XP_012479372.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 154.1 bits (388), Expect = 1.500e-34
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 1 

		  

Query: 6    STSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAE 65
            S       ++AVQISQ+MYRNI+GTTKSKEAMKFACSD+ PC NIVLSNI+L KKDGTAE
Sbjct: 993  SPKTCQNQTSAVQISQIMYRNISGTTKSKEAMKFACSDTTPCSNIVLSNINLEKKDGTAE 1052

Query: 66   TYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
            TYCNS  GFG+G ++PSADCL+SNDK Y   D  + S+L E   DHIVHTEL
Sbjct: 1053 TYCNSAQGFGYGIVHPSADCLSSNDKGYILIDHKENSELAEPTGDHIVHTEL 1104
[Close]
BLAST of Spo10762.1 vs. NCBI nr
Match: gi|763763959|gb|KJB31213.1| (hypothetical protein B456_005G181300 [Gossypium raimondii])

HSP 1 Score: 154.1 bits (388), Expect = 1.500e-34
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 1 

		  

Query: 6    STSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAE 65
            S       ++AVQISQ+MYRNI+GTTKSKEAMKFACSD+ PC NIVLSNI+L KKDGTAE
Sbjct: 989  SPKTCQNQTSAVQISQIMYRNISGTTKSKEAMKFACSDTTPCSNIVLSNINLEKKDGTAE 1048

Query: 66   TYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
            TYCNS  GFG+G ++PSADCL+SNDK Y   D  + S+L E   DHIVHTEL
Sbjct: 1049 TYCNSAQGFGYGIVHPSADCLSSNDKGYILIDHKENSELAEPTGDHIVHTEL 1100
[Close]
BLAST of Spo10762.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFK6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_184640 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.300e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG 73
           STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG
Sbjct: 7   STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG 66

Query: 74  FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
           FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL
Sbjct: 67  FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 110
[Close]
BLAST of Spo10762.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C189_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g148660 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.100e-46
Identity = 92/104 (88.46%), Postives = 99/104 (95.19%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTG 73
           +TAVQISQVMYRNITGTT SKEAMKFACSD+ PCRNIVL+NIDLHKKDGTAETYCNSVTG
Sbjct: 361 TTAVQISQVMYRNITGTTSSKEAMKFACSDAFPCRNIVLTNIDLHKKDGTAETYCNSVTG 420

Query: 74  FGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
           FGFGTINP ADCLTSNDKDYS+PD+MKISQ+ ES EDH+VHTEL
Sbjct: 421 FGFGTINPPADCLTSNDKDYSSPDEMKISQIKESTEDHLVHTEL 464
[Close]
BLAST of Spo10762.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PG30_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04489 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.200e-35
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1 

		  

Query: 2   KTNSSTSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKD 61
           +T +   +    ++AVQISQ+MYRNI+GTTKSKEAMKFACSD+ PC NIVLSNI+L KKD
Sbjct: 307 ETTNGVRIKTWQTSAVQISQIMYRNISGTTKSKEAMKFACSDTTPCSNIVLSNINLEKKD 366

Query: 62  GTAETYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
           GTAETYCNS  GFG+G ++PSADCL+SNDK Y   D  + S+L E   DHIVHTEL
Sbjct: 367 GTAETYCNSAQGFGYGIVHPSADCLSSNDKGYILIDHKENSELAEPSRDHIVHTEL 422
[Close]
BLAST of Spo10762.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PUY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G181300 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.100e-34
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 1 

		  

Query: 6    STSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAE 65
            S       ++AVQISQ+MYRNI+GTTKSKEAMKFACSD+ PC NIVLSNI+L KKDGTAE
Sbjct: 989  SPKTCQNQTSAVQISQIMYRNISGTTKSKEAMKFACSDTTPCSNIVLSNINLEKKDGTAE 1048

Query: 66   TYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
            TYCNS  GFG+G ++PSADCL+SNDK Y   D  + S+L E   DHIVHTEL
Sbjct: 1049 TYCNSAQGFGYGIVHPSADCLSSNDKGYILIDHKENSELAEPTGDHIVHTEL 1100
[Close]
BLAST of Spo10762.1 vs. UniProtKB/TrEMBL
Match: A0A067JRM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17764 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.500e-32
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1 

		  

Query: 6   STSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAE 65
           S       ++AV+IS++MYRN+TGTTKS EAMKFACSD+VPC NIVLSNI+L KKDGTAE
Sbjct: 170 SPKTCQNQTSAVKISEIMYRNVTGTTKSAEAMKFACSDTVPCSNIVLSNINLEKKDGTAE 229

Query: 66  TYCNSVTGFGFGTINPSADCLTSNDKDYSN-----------PDDMKISQLGESIEDHIVH 118
           TYCNS  GFG+G ++P+ADCL+S+DKD+S             D+ +I++L ES  + IVH
Sbjct: 230 TYCNSAQGFGYGIVHPAADCLSSHDKDFSMVDQTEIAQDYVTDETEIAELAESSSEAIVH 289
[Close]
BLAST of Spo10762.1 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.500e-9
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKK--DGTAETYCNSV 73
           ++A+ I  + + ++ GT+ SKEA+K +CSDS PCRNI+L +IDL     DG  E++C   
Sbjct: 351 TSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEA 410

Query: 74  TGFGFGTINPSADCLTSN 90
            G   G + P   CL+ +
Sbjct: 411 YGSSSGQVYP-PPCLSDD 427
[Close]
BLAST of Spo10762.1 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.700e-7
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDG-TAETYCNSVT 73
           S+AVQ+  V+Y+NI GT  S  A+ F CS   PC+ IVL ++DL  + G  A+  CN+V 
Sbjct: 385 SSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVE 444

Query: 74  GFGFGTINP 82
               G ++P
Sbjct: 445 LSETGVVSP 453
[Close]
BLAST of Spo10762.1 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.700e-7
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1 

		  

Query: 15  TAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAETYCNSVTGF 74
           + VQIS V Y +I GT+ ++ A+KF CS   PCR I L ++ L  K+  AE+ C+   G 
Sbjct: 323 SGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGT 382

Query: 75  GFGTINPSADCL 87
             G + P++ CL
Sbjct: 383 TEGVVQPTS-CL 393
[Close]
BLAST of Spo10762.1 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.000e-7
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 1 

		  

Query: 5   SSTSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTA 64
           +S S      +AVQI  V Y+NI GT+ +  A++  CSDS+PC++I LS+I L    G  
Sbjct: 348 TSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKI 407

Query: 65  ETYCN-SVTGFGFGTINPSADCLT-----SNDKDYSNPDDMKISQLG 106
            +  N +  G+  G + P+   L+        K + +P  + +  +G
Sbjct: 408 ASCLNDNANGYFSGHVIPACKNLSPSAKRKESKSHKHPKTVMVKNMG 454
[Close]
BLAST of Spo10762.1 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.000e-7
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1 

		  

Query: 5   SSTSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTA 64
           +S +      +AV+I  V ++NI GT+ +  A++  CSDSVPC NI LSN+ L    G  
Sbjct: 349 TSAAACKNQRSAVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTSGKV 408

Query: 65  ETYCN-SVTGFGFGTINPSADCL 87
            T  N +  G+    +NPS   L
Sbjct: 409 ATCVNKNANGYYTNPLNPSCKSL 431
[Close]
BLAST of Spo10762.1 vs. TAIR (Arabidopsis)
Match: AT1G23460.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 114.4 bits (285), Expect = 4.800e-26
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1 

		  

Query: 6   STSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAE 65
           S +     ++AV+ISQ+MYRNITGTTKS +A+KFACSD+VPC +IVL+N++L   DG  E
Sbjct: 356 SPTTCQNQTSAVKISQIMYRNITGTTKSAKAIKFACSDTVPCSHIVLNNVNLEGNDGQVE 415

Query: 66  TYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQLGESIEDHIVHTEL 118
            YCNS  GFG+G I+PSADCL S+       DD  + Q  +S E    H EL
Sbjct: 416 AYCNSAEGFGYGVIHPSADCLYSH-------DDKGLDQTHKSEEAETGHDEL 460
[Close]
BLAST of Spo10762.1 vs. TAIR (Arabidopsis)
Match: AT1G70500.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 6.900e-25
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1 

		  

Query: 6   STSVADTLSTAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGTAE 65
           S S     ++AV IS++MYRNITGTTKS +A+ F CSD+VPC +IVL+NI+L   DG  E
Sbjct: 356 SPSTCQNQTSAVHISEIMYRNITGTTKSSKAINFKCSDAVPCSHIVLNNINLEGNDGKVE 415

Query: 66  TYCNSVTGFGFGTINPSADCLTSNDKDYSNPDDMKISQ 104
            YCNS  GFG+G ++PSADCL S+D    N  D  +++
Sbjct: 416 AYCNSAEGFGYGVVHPSADCLYSHDDKSLNQTDQYLAE 453
[Close]
BLAST of Spo10762.1 vs. TAIR (Arabidopsis)
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.700e-10
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1 

		  

Query: 17  VQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLH--KKDGTAETYCNSVTGF 76
           VQI  V Y NI GT+ SKEA+K  CS + PC+++ LSNI+LH   +DG     C +V G 
Sbjct: 333 VQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENVGGS 392

Query: 77  GFGTINPSADC 86
             G I P A+C
Sbjct: 393 IRGKIVP-ANC 402
[Close]
BLAST of Spo10762.1 vs. TAIR (Arabidopsis)
Match: AT1G80170.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.800e-10
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 

		  

Query: 14  STAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKK--DGTAETYCNSV 73
           ++A+ I  + + ++ GT+ SKEA+K +CSDS PCRNI+L +IDL     DG  E++C   
Sbjct: 351 TSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEA 410

Query: 74  TGFGFGTINPSADCLTSN 90
            G   G + P   CL+ +
Sbjct: 411 YGSSSGQVYP-PPCLSDD 427
[Close]
BLAST of Spo10762.1 vs. TAIR (Arabidopsis)
Match: AT1G05660.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.800e-10
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 

		  

Query: 15  TAVQISQVMYRNITGTTKSKEAMKFACSDSVPCRNIVLSNIDLHKKDGT-AETYCNSVTG 74
           + V+ISQV Y+NI GT+ ++EAMK  CS S PC  I L +I L    GT A ++C +  G
Sbjct: 321 SGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVG 380

Query: 75  FGFGTINPSADCL 87
              G I P++ CL
Sbjct: 381 KSLGVIQPTS-CL 392
The following BLAST results are available for this feature:
BLAST of Spo10762.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902156880|gb|KNA06047.1|4.8e-52100.hypothetical protein SOVF_1846... [more]
gi|731342707|ref|XP_010682531.1|3.0e-4688.4PREDICTED: probable polygalact... [more]
gi|728842873|gb|KHG22316.1|1.2e-3465.5hypothetical protein F383_0448... [more]
gi|823159084|ref|XP_012479372.1|1.5e-3467.8PREDICTED: pentatricopeptide r... [more]
gi|763763959|gb|KJB31213.1|1.5e-3467.8hypothetical protein B456_005G... [more]
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BLAST of Spo10762.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QFK6_SPIOL3.3e-52100.Uncharacterized protein OS=Spi... [more]
A0A0J8C189_BETVU2.1e-4688.4Uncharacterized protein OS=Bet... [more]
A0A0B0PG30_GOSAR8.2e-3565.5Uncharacterized protein OS=Gos... [more]
A0A0D2PUY8_GOSRA1.1e-3467.8Uncharacterized protein OS=Gos... [more]
A0A067JRM6_JATCU8.5e-3258.5Uncharacterized protein OS=Jat... [more]
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BLAST of Spo10762.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PGLR5_ARATH8.5e-939.7Probable polygalacturonase At1... [more]
PGLR_ACTDE2.7e-742.0Polygalacturonase OS=Actinidia... [more]
PGLR_PRUPE4.7e-740.2Polygalacturonase OS=Prunus pe... [more]
PGLR2_CRYJA8.0e-730.8Polygalacturonase OS=Cryptomer... [more]
PGLR2_JUNAS8.0e-737.3Polygalacturonase OS=Juniperus... [more]
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BLAST of Spo10762.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G23460.14.8e-2652.6Pectin lyase-like superfamily ... [more]
AT1G70500.16.9e-2553.0Pectin lyase-like superfamily ... [more]
AT2G33160.13.7e-1047.8glycoside hydrolase family 28 ... [more]
AT1G80170.14.8e-1039.7Pectin lyase-like superfamily ... [more]
AT1G05660.14.8e-1045.2Pectin lyase-like superfamily ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 13..72
score: 5.5
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 14..87
score: 1.54
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 14..93
score: 2.8
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 14..115
score: 1.1
NoneNo IPR availablePANTHERPTHR31375:SF29PECTIN LYASE-LIKE PROTEIN-RELATEDcoord: 14..115
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0050896 response to stimulus
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0010050 vegetative phase change
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0010364 regulation of ethylene biosynthetic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0010073 meristem maintenance
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0042545 cell wall modification
biological_process GO:0007267 cell-cell signaling
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0043412 macromolecule modification
biological_process GO:0009987 cellular process
biological_process GO:0065007 biological regulation
biological_process GO:0005982 starch metabolic process
biological_process GO:0042546 cell wall biogenesis
biological_process GO:0045491 xylan metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0006869 lipid transport
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009651 response to salt stress
biological_process GO:0002237 response to molecule of bacterial origin
biological_process GO:0009408 response to heat
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0009789 positive regulation of abscisic acid-activated signaling pathway
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0010351 lithium ion transport
biological_process GO:0010150 leaf senescence
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0001736 establishment of planar polarity
biological_process GO:0050832 defense response to fungus
biological_process GO:0042742 defense response to bacterium
biological_process GO:0052544 defense response by callose deposition in cell wall
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0048825 cotyledon development
biological_process GO:0009926 auxin polar transport
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0051301 cell division
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0048439 flower morphogenesis
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0010014 meristem initiation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0006312 mitotic recombination
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0048449 floral organ formation
biological_process GO:0006897 endocytosis
biological_process GO:0048589 developmental growth
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0016049 cell growth
biological_process GO:0007155 cell adhesion
biological_process GO:0045010 actin nucleation
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0006468 protein phosphorylation
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0010089 xylem development
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0009733 response to auxin
biological_process GO:0009630 gravitropism
biological_process GO:0009560 embryo sac egg cell differentiation
cellular_component GO:0016020 membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0009507 chloroplast
cellular_component GO:0045298 tubulin complex
cellular_component GO:0005576 extracellular region
cellular_component GO:0000785 chromatin
cellular_component GO:0030140 trans-Golgi network transport vesicle
cellular_component GO:0005886 plasma membrane
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0033897 ribonuclease T2 activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0035091 phosphatidylinositol binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005215 transporter activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo107930.77Barchart | Table
Spo135260.72Barchart | Table
Spo106750.72Barchart | Table
Spo145900.72Barchart | Table
Spo254870.72Barchart | Table
Spo022540.71Barchart | Table
Spo252340.70Barchart | Table
Spo171230.70Barchart | Table
Spo168820.70Barchart | Table
Spo202420.70Barchart | Table
Spo107630.70Barchart | Table
Spo160880.69Barchart | Table
Spo134670.69Barchart | Table
Spo125110.69Barchart | Table
Spo204570.69Barchart | Table
Spo084080.69Barchart | Table
Spo001370.69Barchart | Table
Spo013130.69Barchart | Table
Spo162700.68Barchart | Table
Spo202440.68Barchart | Table
Spo174750.68Barchart | Table
Spo227500.68Barchart | Table
Spo006940.68Barchart | Table
Spo212200.68Barchart | Table
Spo028840.68Barchart | Table
Spo071100.67Barchart | Table
Spo055300.67Barchart | Table
Spo177790.67Barchart | Table
Spo049730.67Barchart | Table
Spo168810.67Barchart | Table
Spo047030.67Barchart | Table
Spo197030.67Barchart | Table
Spo163350.67Barchart | Table
Spo105500.67Barchart | Table
Spo105630.67Barchart | Table
Spo233860.67Barchart | Table
Spo171840.66Barchart | Table
Spo003080.66Barchart | Table
Spo010800.66Barchart | Table
Spo011810.66Barchart | Table
Spo017510.66Barchart | Table
Spo020710.66Barchart | Table
Spo022630.66Barchart | Table
Spo037310.66Barchart | Table
Spo104150.66Barchart | Table
Spo114880.66Barchart | Table
Spo140840.66Barchart | Table
Spo179140.66Barchart | Table
Spo199260.66Barchart | Table
Spo217370.66Barchart | Table
Spo227480.66Barchart | Table
Spo248610.66Barchart | Table
Spo250130.66Barchart | Table
Spo251030.66Barchart | Table
Spo268330.65Barchart | Table
Spo092600.65Barchart | Table
Spo229700.65Barchart | Table
Spo092190.65Barchart | Table
Spo236110.65Barchart | Table
Spo088840.65Barchart | Table
Spo176180.65Barchart | Table
Spo174740.65Barchart | Table
Spo172350.65Barchart | Table
Spo127560.65Barchart | Table
Spo078610.65Barchart | Table