Spo10643 (gene) | SpinachBase

Overview


Name	Spo10643
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Serine/arginine-rich splicing factor 7
Location	chr1 : 40797272 .. 40802780 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCAAAGCCCATGACTTTTTGTAACTTCCTGATTTGTCCTTAAAATCAAAACTAAGCACAAATCAAAATCAAACAGTGTCGTTTTTCCTAATTGCAAAGACGTAATTCCCCCCTTTTGATCGAAACCCTAGGTTCGCTCCCCTCAATTCTCCATCTATCTTCATCGTTATTTTTCTTCGATTAACCCTTAAAACTTTAGTTTGATCGAAACCCTAGGTTCGATTTTGCGTTTTTTTGAGTTGTCGTAGATTAATTCTCGTCGAATTTTTCCCAGGTATCAGATCGCTTTAACAATGGCACGGGTTTATGTTGGTAATCTGGATCCTCAAGTCACCGAACGCGAGCTCGAGGATGAATTTCGAGTTTATGGCGTTCTTCGCAGGTTCAAATTTGTTCTGTCTTTATCTTTTTCAAATAAATTTATCCTGATTTTGATTTGAATAGTATAATTAGGGATTTTAATTCTTGTATGGATAGTTTTTTTTTTCCTGATAATTGGGTGATGTCTATCATAACGGAATTAGACAATTTTATCTTTGATTATGGTCTTACGGTTTAGTGGTTTACTTATGTTAACGAATGGTCATGAATCATATTGCAGTGTCTGGGTTGCTCGAAGGCCACCGGGCTACGCTTTTATTGAATTTGATGACAAAAGGGATGCGCTTGATGCAATTCATGCTCTTGATGGTAGCTCCTCTTCTTGGTTAATCTTTATTTTCTTGACAAATCAATAAGGCAGGGAGTTTTTATTTATTTATTTATTATGGAGTTCATTCATTATGTGCTTAATTTACAGGATTATCTTTCAATTGTACTCCATATTTCTTTTGATTGCTTTTTTTTCATCTTATGTAATCCTTCCTTCCTTTGGAGTTATCGTAGCTGACTATGTTTAGTGATCCGTTTATCATAGACTGTGCTGTATTTTGTAACTTCGCCTGAGTTTGTTGATAGCCTTATGTCGAGCTGTGCATTTGTCCTTAACCAGGAAGGCAAGAAGCTTAGGGAACAACTCAAAGAACTGGATCCAACAATTTTTTTTTTTGAAAATGTTGGCTGGAGTTAATATGATTGGATTCTGTTCTTGGACATGCTTGCAACTGTTTTGTGCATGCCAATGTGTATTTAACATTATCCTTATATATTGCTCACATTAGTAGCCGCACGTGAGTATATCGGTAATCAAAACCGTGTATTGTCATGAAGGTCTGCTTGTCGACTATATCCTTGTCAGTACGCGCACATTTGTATGCTGAGTTGCTGATGTTAGTTATGAGTTAGGCTGGTTGCAAAGTGAGCCTGTTCCAGATATATTATCATGTATTAGCAAGTGTGATTCCTTATGTGTTGTACAAACATGGGCCATTTTACTTGTACTCACGAGCAATCTCATATAACAGGAAGGAATGGCTGGCGAGTTGAACTTTCCCGTAATACAAAAGGCGGCGGAGGTCGAGGTGGACGTGGTGGGCGTGGGGGTGAGGATATGAAATGCTATGAGTGTGGAGAACCTGGTCACTTTGCTCGTGAATGTCGCCTGCGTGTTGGTTCTAGAGGTGTAGGTGGTGGACGGCGTCGAAGTCCTTCTCCTATTCGTCATCGTGGAAGTCCTAGTTATGGCCGCAGGTTTGCATTTGAGATATTGTGAATGCTTTTTTTGTTTTCTTTTGTACGAAGGATGGTTTAGTGTATACTTTGTGGTCATTTTTTTATTGGAACTTTTTTTATATTGCTGCAGCTCACTTATGGCCCTTGGGATCAGTGCTTTTGCTTCTATTTATATCATATATTTGTTTAACTTGGCATTTCTGTATATCCCTGTCGCTTGGGTACTATGAGGATTGTAGACAACCTATAAGATTTTTTTTTGAGTTGATGAGGGTATTTCCCCTTTGCAAACTCTTCTTGACAGCTATTAAGAGATGGAGTTTGTTTTTTGTCACTGTTTTTTTAACTAGCAATGATTGATGTATGAGCCTTTCATGTTGCAGGAGCTATAGCCCACGTGGGTATAGCCCACGAGGAAGGAGGTCACCACTACCACCAAGAAAACGGAGCATATCACCTGCATATCGCCGTGGTCGAAGCTACAGCAGATCACCACCAATACGCCGTGCTCGCCGTGCCTCACCTTATGCTAATGGGTATGTGGCGTTTTTCCCATTAATAACCATTCTAGCCATTGTATTTTTATGTCTTATTCTTTCTTTGATATCCATTTTTCTCATAATGGCACATTTCTTAGCTAAGTGTTGTTCGATAATAGTTTTTGCAAATTTTAATGTAGCTAATAATACTAATACAGAAAGACTACAGAGGCTGTGGATGGTAATCTGGTAATTACCTAATCAGAAATAAGAGTGGTTAAAATTCACTTGAGAAAAGTTGTAGTGTGAAGGATGGGATCCTCTGGTTTTGAGATTTTATTAGTTTGTTTTGTTGAATTGGATTGTCCAAGTATCATTGTCATTTCCTTATTTTTAAAGGCCAGACAGGGTGCTTTAGTGTAATTTGAAAATATATGTAGAGCATACATAGACTATTGTGAACATCTGAAATTGAAGCAATTGAATGTCCCTTGTTTGAGCTTTACTAGCATATTTTTAACAGTGGCGTATAATGGCACTAAGTTATTTGTTGACGAGTAACTAGATGCTCCAAGAGTTACTAGAAGTGGTAAGGTGTTATTGAGCACGATCTATAATCAAGTTCCTTCTTATAGCCAAATGCCAATCATCTAGATCAATATCATTTGTGGCCCTCTGTGCGGTCCTCATTTATACACTTAGATCTTGAATCTTGTATTGAGATTGCATCTCGTAAGTGTGCTTCTTCTAATCTTATAAATTTAACTTTTCTGCTGCAGGGTTTGATGCTGGTCAATGGTGATGGAGCTTTAGGAGGCAGCAGTTGCAGGGTCCAATGATAGTACTAGTAGAGTGGAGACTTGATACTTGATAGTACTGTGCATATTGAAGTGAAGACTATGAATTGCTATAAACTTGCATCAGTTTGCTCTACGGCTCTCTGAATGCTGTAGGTTTCTGTTATGCTTTAATTTTTTTTTTTTAATTTTAGTTTTGTGATCATATGTTAATCTCGCGTACTTAAAATCTTCTTAGTGTGTTTGTATTCTATGTGAAGTTGGTGTTTTCGAAAGACTAAAAGTTCATATTTTCTTTTGTGAGGTGTGATTTTAGGATGCAACGGCATCGTTTCGACTCTTACTGCATACCGTGCTCCGTTTTTTCAAATCTGCTTGTCTGCATCATCATCTGCTTGTCGTCTTAGCTATCATGAATCTGCAGCTTCAGTACACCTTCATACTTTAGTGTAATCATCTGTGACCAAGCTGCTCCATTTAGACTACCGTGTTTGGCTGGTTGGAGAAGATGAGACCCTTGTTGTTCGTCATAGCTGGTTGTGAGGGGGCATAGGAATCAAAAGTTCTGTTTCTGGATGTTGTAAAAATCTACACAAAGAGTTGAAAAGGAAGTTAACTGCACATGCCCCTTTGCTTGAACATTTAAGAGTCGCAACGTAGTAACGTACTTCTCATCGCTTTTTTATGGACTTGACCTCCATACTTGTTGATGCGACTCAGTAAAAGTACTGCCCCAACCTCTGTCCTCAGGAAAAACTTTTAAAAAATTGGACAGTGTGACATCAATTAAAAGACCTTCAGCAGGTAAGGTTATTTTATTTACCTGCTTGCAATTTGCGTGTTTTGTAAACGCGCTCCTTTGTTTCTGACATGTCTTTGCCGCTTGATTGTTTTGTGATTGAGATAGAATTTGAATGCTCAAATTGCAGTAGAATGCATTGTCATTTCATTTCAAAATTTGGTTACCTGCCTTCATTTGATATTTACATAGCTCGATTACATTGCATCCATTGCCTAATACTTCCTTTGTAGCATCTCTTGTGAGTTGTGACGAGACTTAGGAAGTTTGTAATTGCATTTTAGTGCATTAGGCTGGTGTCATAAATGTTCGGGAAGTTCTTTTTTTTTTTTTTGGGAAAATAGTTAACTTTTTTGAGATCGTTTCCTTTCTAATGTGTGGAATATTAGGTTTGGACCTTGGGTGGTCTACAATTTTAATCCCTGCAAAACAATTATCGAACTTTGTTGGATGTCCTTGAATCTATGCTTGGCTTGACTTACAAAAGGTTGCTTATTTGCTTTCTTTTTGAAGACCTGGTTTTGAATAGTAGCAAACTGTGAATGGCTTTGAGTTTTTAAAGATTGCTTCTTTGCTTTGTTCTGATTCTTTTAGAAGAGTTGATTTGGGTCACATAATATTGTAACACGGATCGTATGAGGTGTAGCTTTTATGGTTACAATTCTCACAAGGTGATGTGCTTATTCATGGAATGTGTCATATGCCTGGTAATGGATATATCTGGCAGGTATGCGTTGCTTAAATTCACACCAACTCTTTACTAATTCTTCTCTGTCGTGACCTTGTATTTAATGGACCAACATTGCCTTGTGGAGTTGTAGTCTCGAGGTGATTATTTGTTTAGGTGGATATGCACGGTTTGTTCACCTGTTTGCATCATAATCCTTGGATGTAAACTTAGGTGTTGTTTGGTAGACATAAAAACATGGTAAGTAGAACTACCTAGGAAGGGGAATATTGTGGTGTTGTTTGGTTTACAATAACATGGAGGGGAATATTGTGGTGTTGTTTGGTTTACAATAACATGGGAAGTCACACTTCGTAGGAACTCTCACTTCCCTCAAAATGGAGGAAGTTCCCATACTTCCCATGCTCAAACCAAACAACATTTCGTACTTCCTAGGAAATGTCAATACATGGGAAAATCTTCTTCCTATGAACTTTTACTTCCTACGATCAACCAAACGTTACCTTAAGAGAAGAAGGTGACTGAGCTGACAGGCATTGACATATCATTTATCATATATCATTGTCTACAAAGTAAGTGAATGATATAACTGGATTATTCATTTATTGAGTGTTTAACACTTTAACTCCCCTGTGCTGCATGGAACTTTTTTATTTTTTGAGACCCACTACAGTGTATGGAAATGTTGTTGGAGTTTTGCCATGATTTTGAAGAAACCAGGCTTCTTGTTACGTCCTTCATGTGAGCGCTCGGGACATCTTTTGTATGTACTCTTCAAAATCAACTAAATGATTGATTTTTCAGTATGGAGACGGAAGATTGATTGACCTCTATGTATTGCTTTCTTAATGCCGGATGATATTTTTAAAACATATTTTGTATGTTCATGCCATTTGATAGTATAGTTTGTCAATTTTTGAATTAGTATTTTTGGGTGCATAAATGATGTAATTTTGGAGTGATATTTTCACTGTTCGTTTCTTCTCGGCTGTTCTGATTTGTTTATATCCTGGTTGTGGTTCGTGCTTATGATGCAATTAGGTGTAGTGAATAAAACTCAAATGGTCAGTGGGTATCTTTAAGCCCCATTTATCATTTTCATGTATCGTTATGGGAATCAAGGAAGAAATAAA

mRNA sequence

TCTTCAAAGCCCATGACTTTTTGTAACTTCCTGATTTGTCCTTAAAATCAAAACTAAGCACAAATCAAAATCAAACAGTGTCGTTTTTCCTAATTGCAAAGACGTAATTCCCCCCTTTTGATCGAAACCCTAGGTATCAGATCGCTTTAACAATGGCACGGGTTTATGTTGGTAATCTGGATCCTCAAGTCACCGAACGCGAGCTCGAGGATGAATTTCGAGTTTATGGCGTTCTTCGCAGTGTCTGGGTTGCTCGAAGGCCACCGGGCTACGCTTTTATTGAATTTGATGACAAAAGGGATGCGCTTGATGCAATTCATGCTCTTGATGGAAGGAATGGCTGGCGAGTTGAACTTTCCCGTAATACAAAAGGCGGCGGAGGTCGAGGTGGACGTGGTGGGCGTGGGGGTGAGGATATGAAATGCTATGAGTGTGGAGAACCTGGTCACTTTGCTCGTGAATGTCGCCTGCGTGTTGGTTCTAGAGGTGTAGGTGGTGGACGGCGTCGAAGTCCTTCTCCTATTCGTCATCGTGGAAGTCCTAGTTATGGCCGCAGGAGCTATAGCCCACGTGGGTATAGCCCACGAGGAAGGAGGTCACCACTACCACCAAGAAAACGGAGCATATCACCTGCATATCGCCGTGGTCGAAGCTACAGCAGATCACCACCAATACGCCGTGCTCGCCGTGCCTCACCTTATGCTAATGGGGTTTGATGCTGGTCAATGGTGATGGAGCTTTAGGAGGCAGCAGTTGCAGGGTCCAATGATAGTACTAGTAGAGTGGAGACTTGATACTTGATAGTACTGTGCATATTGAAGTGAAGACTATGAATTGCTATAAACTTGCATCAGTTTGCTCTACGGCTCTCTGAATGCTGATGCAACGGCATCGTTTCGACTCTTACTGCATACCGTGCTCCGTTTTTTCAAATCTGCTTGTCTGCATCATCATCTGCTTGTCGTCTTAGCTATCATGAATCTGCAGCTTCAGTACACCTTCATACTTTAGTGTAATCATCTGTGACCAAGCTGCTCCATTTAGACTACCGTGTTTGGCTGGTTGGAGAAGATGAGACCCTTGTTGTTCGTCATAGCTGGTTGTGAGGGGGCATAGGAATCAAAAGTTCTGTTTCTGGATGTTGTAAAAATCTACACAAAGAGTTGAAAAGGAAGTTAACTGCACATGCCCCTTTGCTTGAACATTTAAGAGTCGCAACGTAGTAACGTACTTCTCATCGCTTTTTTATGGACTTGACCTCCATACTTGTTGATGCGACTCAGTAAAAGTACTGCCCCAACCTCTGTCCTCAGGAAAAACTTTTAAAAAATTGGACAGTGTGACATCAATTAAAAGACCTTCAGCAGGTAAGGTTATTTTATTTACCTGCTTGCAATTTGCGTGTTTTGTAAACGCGCTCCTTTGTTTCTGACATGTCTTTGCCGCTTGATTGTTTTGTGATTGAGATAGAATTTGAATGCTCAAATTGCAGTAGAATGCATTGTCATTTCATTTCAAAATTTGGTTACCTGCCTTCATTTGATATTTACATAGCTCGATTACATTGCATCCATTGCCTAATACTTCCTTTGTAGCATCTCTTGTGAGTTGTGACGAGACTTAGGAAGTTTGTAATTGCATTTTAGTGCATTAGGCTGGTGTCATAAATGTTCGGGAAGTTCTTTTTTTTTTTTTTGGGAAAATAGTTAACTTTTTTGAGATCGTTTCCTTTCTAATGTGTGGAATATTAGGTTTGGACCTTGGGTGGTCTACAATTTTAATCCCTGCAAAACAATTATCGAACTTTGTTGGATGTCCTTGAATCTATGCTTGGCTTGACTTACAAAAGGTTGCTTATTTGCTTTCTTTTTGAAGACCTGGTTTTGAATAGTAGCAAACTGTGAATGGCTTTGAGTTTTTAAAGATTGCTTCTTTGCTTTGTTCTGATTCTTTTAGAAGAGTTGATTTGGGTCACATAATATTGTAACACGGATCGTATGAGGTGTAGCTTTTATGGTTACAATTCTCACAAGGTGATGTGCTTATTCATGGAATGTGTCATATGCCTGGTAATGGATATATCTGGCAGGTATGCGTTGCTTAAATTCACACCAACTCTTTACTAATTCTTCTCTGTCGTGACCTTGTATTTAATGGACCAACATTGCCTTGTGGAGTTGTAGTCTCGAGGTGATTATTTGTTTAGGTGGATATGCACGGTTTGTTCACCTGTTTGCATCATAATCCTTGGATGTAAACTTAGGTGTTGTTTGGTAGACATAAAAACATGGTAAGTAGAACTACCTAGGAAGGGGAATATTGTGGTGTTGTTTGGTTTACAATAACATGGAGGGGAATATTGTGGTGTTGTTTGGTTTACAATAACATGGGAAGTCACACTTCGTAGGAACTCTCACTTCCCTCAAAATGGAGGAAGTTCCCATACTTCCCATGCTCAAACCAAACAACATTTCGTACTTCCTAGGAAATGTCAATACATGGGAAAATCTTCTTCCTATGAACTTTTACTTCCTACGATCAACCAAACGTTACCTTAAGAGAAGAAGGTGACTGAGCTGACAGGCATTGACATATCATTTATCATATATCATTGTCTACAAAGTAAGTGAATGATATAACTGGATTATTCATTTATTGAGTGTTTAACACTTTAACTCCCCTGTGCTGCATGGAACTTTTTTATTTTTTGAGACCCACTACAGTGTATGGAAATGTTGTTGGAGTTTTGCCATGATTTTGAAGAAACCAGGCTTCTTGTTACGTCCTTCATGTGAGCGCTCGGGACATCTTTTGTATGTACTCTTCAAAATCAACTAAATGATTGATTTTTCAGTATGGAGACGGAAGATTGATTGACCTCTATGTATTGCTTTCTTAATGCCGGATGATATTTTTAAAACATATTTTGTATGTTCATGCCATTTGATAGTATAGTTTGTCAATTTTTGAATTAGTATTTTTGGGTGCATAAATGATGTAATTTTGGAGTGATATTTTCACTGTTCGTTTCTTCTCGGCTGTTCTGATTTGTTTATATCCTGGTTGTGGTTCGTGCTTATGATGCAATTAGGTGTAGTGAATAAAACTCAAATGGTCAGTGGGTATCTTTAAGCCCCATTTATCATTTTCATGTATCGTTATGGGAATCAAGGAAGAAATAAA

Coding sequence (CDS)

ATGGCACGGGTTTATGTTGGTAATCTGGATCCTCAAGTCACCGAACGCGAGCTCGAGGATGAATTTCGAGTTTATGGCGTTCTTCGCAGTGTCTGGGTTGCTCGAAGGCCACCGGGCTACGCTTTTATTGAATTTGATGACAAAAGGGATGCGCTTGATGCAATTCATGCTCTTGATGGAAGGAATGGCTGGCGAGTTGAACTTTCCCGTAATACAAAAGGCGGCGGAGGTCGAGGTGGACGTGGTGGGCGTGGGGGTGAGGATATGAAATGCTATGAGTGTGGAGAACCTGGTCACTTTGCTCGTGAATGTCGCCTGCGTGTTGGTTCTAGAGGTGTAGGTGGTGGACGGCGTCGAAGTCCTTCTCCTATTCGTCATCGTGGAAGTCCTAGTTATGGCCGCAGGAGCTATAGCCCACGTGGGTATAGCCCACGAGGAAGGAGGTCACCACTACCACCAAGAAAACGGAGCATATCACCTGCATATCGCCGTGGTCGAAGCTACAGCAGATCACCACCAATACGCCGTGCTCGCCGTGCCTCACCTTATGCTAATGGGGTTTGA

Protein sequence

MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDGRNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRSPSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRASPYANGV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10643.1	Spo10643.1	mRNA

Homology

[Close]

BLAST of Spo10643.1 vs. NCBI nr
Match: gi|902124522|gb|KNA04056.1| (hypothetical protein SOVF_203250 [Spinacia oleracea])

HSP 1 Score: 377.5 bits (968), Expect = 1.400e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG
Sbjct: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS
Sbjct: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA
Sbjct: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180

Query: 181 SPYANGV 188
           SPYANGV
Sbjct: 181 SPYANGV 187

[Close]

BLAST of Spo10643.1 vs. NCBI nr
Match: gi|731342809|ref|XP_010682582.1| (PREDICTED: serine/arginine-rich splicing factor RSZ21 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 332.8 bits (852), Expect = 3.900e-88
Identity = 167/183 (91.26%), Postives = 170/183 (92.90%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           MARVYVGNLDP VTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG
Sbjct: 1   MARVYVGNLDPHVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           RNGWRVELS N KGGGGRGGR GRGGEDMKCYECGEPGHFARECR R GSRG+GGGRRRS
Sbjct: 61  RNGWRVELSHNAKGGGGRGGR-GRGGEDMKCYECGEPGHFARECRSRFGSRGIGGGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSPIRHRGSP YGRRSYSPRGYSPRGRRS  PP++RSISP YRRGRSYSRSPP RR RR 
Sbjct: 121 PSPIRHRGSPGYGRRSYSPRGYSPRGRRS--PPKRRSISPGYRRGRSYSRSPPYRRVRRI 180

Query: 181 SPY 184
           SPY
Sbjct: 181 SPY 180

[Close]

BLAST of Spo10643.1 vs. NCBI nr
Match: gi|976920899|gb|KVI05607.1| (Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus])

HSP 1 Score: 293.9 bits (751), Expect = 2.000e-76
Identity = 157/190 (82.63%), Postives = 168/190 (88.42%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+V+ERELEDEFRVYGVLR+VWVARRPPGYAF+EFDD+RDALDAI ALDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVYGVLRNVWVARRPPGYAFVEFDDRRDALDAIRALDG 60

Query: 61  RNGWRVELSRNTK-GGGGRG---GRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGG 120
           +NGWRVELS N+K GGGGRG   GRGG GGED+KCYECGE GHFARECRLRVG RG+G G
Sbjct: 61  KNGWRVELSHNSKGGGGGRGGGRGRGGGGGEDLKCYECGEAGHFARECRLRVGPRGLGSG 120

Query: 121 RRRSPSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRR 180
           RRRSPSP R R SPSYGRRSYSPR YSPRGRRSP    +RSISP  RRGRSYSRSPP RR
Sbjct: 121 RRRSPSP-RRRRSPSYGRRSYSPR-YSPRGRRSP----RRSISPPPRRGRSYSRSPPYRR 180

Query: 181 ARRASPYANG 187
           ARR SPYANG
Sbjct: 181 ARRDSPYANG 184

[Close]

BLAST of Spo10643.1 vs. NCBI nr
Match: gi|567891815|ref|XP_006438428.1| (hypothetical protein CICLE_v10032693mg [Citrus clementina])

HSP 1 Score: 292.0 bits (746), Expect = 7.600e-76
Identity = 150/186 (80.65%), Postives = 166/186 (89.25%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+V+ER+LEDEFR++GVLRSVWVARRPPGYAF+EFDD+RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           +NGWRVELS N+KGGGGRGGRG  GGED+KCYECGEPGHFARECRLR+GSRG+G GRRRS
Sbjct: 61  KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSP R R SPSYG   Y  R YSPRGRRSP PPR+RSISP  RRGRSYSRSPP R +RR 
Sbjct: 121 PSP-RRRRSPSYG---YGRRSYSPRGRRSP-PPRRRSISP--RRGRSYSRSPPHRHSRRG 179

Query: 181 SPYANG 187
           SPYANG
Sbjct: 181 SPYANG 179

[Close]

BLAST of Spo10643.1 vs. NCBI nr
Match: gi|567891813|ref|XP_006438427.1| (hypothetical protein CICLE_v10032693mg [Citrus clementina])

HSP 1 Score: 287.3 bits (734), Expect = 1.900e-74
Identity = 148/186 (79.57%), Postives = 164/186 (88.17%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+V+ER+LEDEFR++GVLRSVWVARRPPGYAF+EFDD+RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           +NGWRVELS N+KGGGGRGGRG  GGED+KCYECGEPGHFARECRLR+GSRG+G GRRRS
Sbjct: 61  KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSP R R SPSYG        YSPRGRRSP PPR+RSISP  RRGRSYSRSPP R +RR 
Sbjct: 121 PSP-RRRRSPSYG-------SYSPRGRRSP-PPRRRSISP--RRGRSYSRSPPHRHSRRG 175

Query: 181 SPYANG 187
           SPYANG
Sbjct: 181 SPYANG 175

[Close]

BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_203250 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 9.500e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG
Sbjct: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS
Sbjct: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA
Sbjct: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180

Query: 181 SPYANGV 188
           SPYANGV
Sbjct: 181 SPYANGV 187

[Close]

BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4X5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g149140 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.700e-88
Identity = 167/183 (91.26%), Postives = 170/183 (92.90%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           MARVYVGNLDP VTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG
Sbjct: 1   MARVYVGNLDPHVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           RNGWRVELS N KGGGGRGGR GRGGEDMKCYECGEPGHFARECR R GSRG+GGGRRRS
Sbjct: 61  RNGWRVELSHNAKGGGGRGGR-GRGGEDMKCYECGEPGHFARECRSRFGSRGIGGGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSPIRHRGSP YGRRSYSPRGYSPRGRRS  PP++RSISP YRRGRSYSRSPP RR RR 
Sbjct: 121 PSPIRHRGSPGYGRRSYSPRGYSPRGRRS--PPKRRSISPGYRRGRSYSRSPPYRRVRRI 180

Query: 181 SPY 184
           SPY
Sbjct: 181 SPY 180

[Close]

BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
Match: A0A103YAQ1_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus GN=Ccrd_016045 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.400e-76
Identity = 157/190 (82.63%), Postives = 168/190 (88.42%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+V+ERELEDEFRVYGVLR+VWVARRPPGYAF+EFDD+RDALDAI ALDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVYGVLRNVWVARRPPGYAFVEFDDRRDALDAIRALDG 60

Query: 61  RNGWRVELSRNTK-GGGGRG---GRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGG 120
           +NGWRVELS N+K GGGGRG   GRGG GGED+KCYECGE GHFARECRLRVG RG+G G
Sbjct: 61  KNGWRVELSHNSKGGGGGRGGGRGRGGGGGEDLKCYECGEAGHFARECRLRVGPRGLGSG 120

Query: 121 RRRSPSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRR 180
           RRRSPSP R R SPSYGRRSYSPR YSPRGRRSP    +RSISP  RRGRSYSRSPP RR
Sbjct: 121 RRRSPSP-RRRRSPSYGRRSYSPR-YSPRGRRSP----RRSISPPPRRGRSYSRSPPYRR 180

Query: 181 ARRASPYANG 187
           ARR SPYANG
Sbjct: 181 ARRDSPYANG 184

[Close]

BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
Match: V4VGM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032693mg PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.300e-76
Identity = 150/186 (80.65%), Postives = 166/186 (89.25%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+V+ER+LEDEFR++GVLRSVWVARRPPGYAF+EFDD+RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           +NGWRVELS N+KGGGGRGGRG  GGED+KCYECGEPGHFARECRLR+GSRG+G GRRRS
Sbjct: 61  KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSP R R SPSYG   Y  R YSPRGRRSP PPR+RSISP  RRGRSYSRSPP R +RR 
Sbjct: 121 PSP-RRRRSPSYG---YGRRSYSPRGRRSP-PPRRRSISP--RRGRSYSRSPPHRHSRRG 179

Query: 181 SPYANG 187
           SPYANG
Sbjct: 181 SPYANG 179

[Close]

BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
Match: V4TEF9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032693mg PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.300e-74
Identity = 148/186 (79.57%), Postives = 164/186 (88.17%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+V+ER+LEDEFR++GVLRSVWVARRPPGYAF+EFDD+RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFDDRRDAVDAIRALDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           +NGWRVELS N+KGGGGRGGRG  GGED+KCYECGEPGHFARECRLR+GSRG+G GRRRS
Sbjct: 61  KNGWRVELSHNSKGGGGRGGRGRGGGEDLKCYECGEPGHFARECRLRIGSRGLGSGRRRS 120

Query: 121 PSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRARRA 180
           PSP R R SPSYG        YSPRGRRSP PPR+RSISP  RRGRSYSRSPP R +RR 
Sbjct: 121 PSP-RRRRSPSYG-------SYSPRGRRSP-PPRRRSISP--RRGRSYSRSPPHRHSRRG 175

Query: 181 SPYANG 187
           SPYANG
Sbjct: 181 SPYANG 175

[Close]

BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.700e-64
Identity = 137/200 (68.50%), Postives = 150/200 (75.00%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+VTERELEDEFR +GV+RSVWVARRPPGYAF++F+D RDA DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  RNGWRVELSRNT--KGGGGRGG--------RGGRGGEDMKCYECGEPGHFARECRLRVGS 120
           +NGWRVE S N   +GGGGRGG        RGGRGG D+KCYECGE GHFARECR R G+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 121 RGVGGGRRRSPS----PIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGR 180
                GRRRS S    P R+R SPSYGRRSYSPR       RSP PPR+RS SP   RGR
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPSYGRRSYSPRA------RSPPPPRRRSPSPPPARGR 180

Query: 181 SYSRSPPIRRARRASPYANG 187
           SYSRSPP  RAR   PYANG
Sbjct: 181 SYSRSPPPYRAREEVPYANG 189

[Close]

BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.400e-61
Identity = 133/194 (68.56%), Postives = 147/194 (75.77%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+VTERELEDEFR +GV+RSVWVARRPPGYAF++F+D RDA DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  RNGWRVELSRNTKGGGGR-GGRG------GRGGEDMKCYECGEPGHFARECRLRVGSRGV 120
           +NGWRVE S N  GGGGR GGRG      GRGG D+KCYECGE GHFARECR R GS G 
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGR 120

Query: 121 GGGRRRSPSPIRHRGSPSY-GRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSP 180
              R RS SP R+R SP+Y GRRSYSPR       RSP PPR+RS SP   RGR+YSRSP
Sbjct: 121 RRSRSRSRSPPRYRKSPTYGGRRSYSPRA------RSPPPPRRRSPSP---RGRNYSRSP 180

Query: 181 PIRRARRASPYANG 187
           P  RAR   PYANG
Sbjct: 181 PPYRARDEVPYANG 185

[Close]

BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.300e-59
Identity = 129/192 (67.19%), Postives = 143/192 (74.48%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           MARVYVGNLDP+VT RELEDEFRV+GVLRSVWVAR+PPG+AFI+FDD+RDA DAI  +DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           +NGWRVELSRN   G  RGGR   G  + KCYECGE GHFARECRLR+GS G+G GRRRS
Sbjct: 61  KNGWRVELSRNASSG--RGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGRRRS 120

Query: 121 PS-----PIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIR 180
            S       R+R SPSYGRRSYSP G S         PR+RS+SPA  R RSYSRSP   
Sbjct: 121 RSRSRSRSPRYRRSPSYGRRSYSPAGRS---------PRRRSVSPA--RARSYSRSPQYN 179

Query: 181 RARRASP-YANG 187
           R R  SP Y NG
Sbjct: 181 RGRDESPAYDNG 179

[Close]

BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
Match: RSZ21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.700e-59
Identity = 137/200 (68.50%), Postives = 149/200 (74.50%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M RVYVGNLDP+VTERELEDEF+ +GVLR+VWVARRPPGYAF+EFDD+RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGG-EDMKCYECGEPGHFARECRLRVGSRGVGGGRRR 120
           +NGWRVELS   KGG G GG G RGG ED KCYECGE GHFARECR     RG G  RRR
Sbjct: 61  KNGWRVELSHKDKGGRG-GGGGRRGGIEDSKCYECGELGHFARECR-----RGRGSVRRR 120

Query: 121 SPSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRAR- 180
           SPSP R R SP YG   Y+ R  SPRGRRS  PPR+RS++P  RRGRSYSRSPP R +R 
Sbjct: 121 SPSP-RRRRSPDYG---YARRSISPRGRRS--PPRRRSVTPP-RRGRSYSRSPPYRGSRR 180

Query: 181 -----------RASPYANGV 188
                      R SPYANGV
Sbjct: 181 DSPRRRDSPYGRRSPYANGV 187

[Close]

BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
Match: RSZ21_ORYSJ (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.800e-59
Identity = 126/191 (65.97%), Postives = 144/191 (75.39%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           MAR+YVGNLDP+VT  ELEDEFRV+GVLRSVWVAR+PPG+AFI+FDDKRDA DA+  LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECRLRVGSRGVGGGRRRS 120
           +NGWRVELSRN+     RGGR   GG +MKCYECGE GHFARECRLR+G  G+G G+RRS
Sbjct: 61  KNGWRVELSRNSSS---RGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGKRRS 120

Query: 121 PSPIR-----HRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIR 180
            S  R     +R SP+YGRRSYSPR  S         PR+RS+SP   RGRSYSRSP   
Sbjct: 121 RSRSRSRSPQYRKSPTYGRRSYSPRDRS---------PRRRSVSPV--RGRSYSRSP--- 174

Query: 181 RARRASPYANG 187
           R R  SPYA+G
Sbjct: 181 RGRGGSPYADG 174

[Close]

BLAST of Spo10643.1 vs. TAIR (Arabidopsis)
Match: AT4G31580.1 (serine/arginine-rich 22)

HSP 1 Score: 244.6 bits (623), Expect = 4.900e-65
Identity = 137/200 (68.50%), Postives = 150/200 (75.00%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+VTERELEDEFR +GV+RSVWVARRPPGYAF++F+D RDA DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  RNGWRVELSRNT--KGGGGRGG--------RGGRGGEDMKCYECGEPGHFARECRLRVGS 120
           +NGWRVE S N   +GGGGRGG        RGGRGG D+KCYECGE GHFARECR R G+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 121 RGVGGGRRRSPS----PIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGR 180
                GRRRS S    P R+R SPSYGRRSYSPR       RSP PPR+RS SP   RGR
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPSYGRRSYSPRA------RSPPPPRRRSPSPPPARGR 180

Query: 181 SYSRSPPIRRARRASPYANG 187
           SYSRSPP  RAR   PYANG
Sbjct: 181 SYSRSPPPYRAREEVPYANG 189

[Close]

BLAST of Spo10643.1 vs. TAIR (Arabidopsis)
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 236.5 bits (602), Expect = 1.300e-62
Identity = 133/194 (68.56%), Postives = 147/194 (75.77%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M+RVYVGNLDP+VTERELEDEFR +GV+RSVWVARRPPGYAF++F+D RDA DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  RNGWRVELSRNTKGGGGR-GGRG------GRGGEDMKCYECGEPGHFARECRLRVGSRGV 120
           +NGWRVE S N  GGGGR GGRG      GRGG D+KCYECGE GHFARECR R GS G 
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGR 120

Query: 121 GGGRRRSPSPIRHRGSPSY-GRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSP 180
              R RS SP R+R SP+Y GRRSYSPR       RSP PPR+RS SP   RGR+YSRSP
Sbjct: 121 RRSRSRSRSPPRYRKSPTYGGRRSYSPRA------RSPPPPRRRSPSP---RGRNYSRSP 180

Query: 181 PIRRARRASPYANG 187
           P  RAR   PYANG
Sbjct: 181 PPYRARDEVPYANG 185

[Close]

BLAST of Spo10643.1 vs. TAIR (Arabidopsis)
Match: AT1G23860.1 (RS-containing zinc finger protein 21)

HSP 1 Score: 230.3 bits (586), Expect = 9.500e-61
Identity = 137/200 (68.50%), Postives = 149/200 (74.50%), Query Frame = 1


		  
Query: 1   MARVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDG 60
           M RVYVGNLDP+VTERELEDEF+ +GVLR+VWVARRPPGYAF+EFDD+RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  RNGWRVELSRNTKGGGGRGGRGGRGG-EDMKCYECGEPGHFARECRLRVGSRGVGGGRRR 120
           +NGWRVELS   KGG G GG G RGG ED KCYECGE GHFARECR     RG G  RRR
Sbjct: 61  KNGWRVELSHKDKGGRG-GGGGRRGGIEDSKCYECGELGHFARECR-----RGRGSVRRR 120

Query: 121 SPSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYSRSPPIRRAR- 180
           SPSP R R SP YG   Y+ R  SPRGRRS  PPR+RS++P  RRGRSYSRSPP R +R 
Sbjct: 121 SPSP-RRRRSPDYG---YARRSISPRGRRS--PPRRRSVTPP-RRGRSYSRSPPYRGSRR 180

Query: 181 -----------RASPYANGV 188
                      R SPYANGV
Sbjct: 181 DSPRRRDSPYGRRSPYANGV 187

[Close]

BLAST of Spo10643.1 vs. TAIR (Arabidopsis)
Match: AT3G53500.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 90.1 bits (222), Expect = 1.500e-18
Identity = 80/190 (42.11%), Postives = 98/190 (51.58%), Query Frame = 1


		  
Query: 3   RVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDGR- 62
           R+YVG L  +   R+LE  F  YG +R V + R    YAF+EF D RDA DA + LDGR 
Sbjct: 12  RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFSDPRDADDARYYLDGRD 71

Query: 63  -NGWR--VELSRNTKGGGGRGGRGGRGGEDMKCYECGEPGHFARECR--------LRVGS 122
            +G R  VE SR    G    G  G      +C+ CG  GH+AR+C          R G 
Sbjct: 72  FDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 131

Query: 123 RG-VGGGRRRSPSPIRHRGSPSYGRRSYSPRGYSPRGRRSPLPPRKRSISPAYRRGRSYS 179
           RG +    + SPSP + R   SY R     R  SPR RRSP      S S +Y RGRSYS
Sbjct: 132 RGHIERNCKNSPSPKKARQGGSYSRSPVKSR--SPRRRRSP------SRSRSYSRGRSYS 190

[Close]

BLAST of Spo10643.1 vs. TAIR (Arabidopsis)
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 81.6 bits (200), Expect = 5.500e-16
Identity = 84/197 (42.64%), Postives = 101/197 (51.27%), Query Frame = 1


		  
Query: 3   RVYVGNLDPQVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDGR- 62
           R+YVG L  +   R+LE  F  YG +R V + R    YAF+EF D RDA DA H LDGR 
Sbjct: 12  RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGRD 71

Query: 63  -NGWR--VELSRNTKGGG----GRGGRGGRGGEDMKCYECGEPGHFARECR--------L 122
            +G R  VE SR    G      RG   G G    +C+ CG  GH+AR+C          
Sbjct: 72  FDGSRITVEFSRGAPRGSRDFDSRGPPPGAG----RCFNCGVDGHWARDCTAGDWKNKCY 131

Query: 123 RVGSRG-VGGGRRRSPSPIRHRGSPSYGRRSYSP-RGYSPRGRRSPLPPRKRSISPAYRR 181
           R G RG +    + SP  +R  G  SY R   SP R  SPR RRSP     RS+S    R
Sbjct: 132 RCGERGHIERNCKNSPKKLRRSG--SYSR---SPVRSRSPRRRRSP----SRSLS----R 188

The following BLAST results are available for this feature:

BLAST of Spo10643.1 vs. NCBI nr
BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
BLAST of Spo10643.1 vs. TAIR (Arabidopsis)

BLAST of Spo10643.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902124522\|gb\|KNA04056.1\|	1.4e-101	100.	hypothetical protein SOVF_2032...	[more]
gi\|731342809\|ref\|XP_010682582.1\|	3.9e-88	91.2	PREDICTED: serine/arginine-ric...	[more]
gi\|976920899\|gb\|KVI05607.1\|	2.0e-76	82.6	Nucleotide-binding, alpha-beta...	[more]
gi\|567891815\|ref\|XP_006438428.1\|	7.6e-76	80.6	hypothetical protein CICLE_v10...	[more]
gi\|567891813\|ref\|XP_006438427.1\|	1.9e-74	79.5	hypothetical protein CICLE_v10...	[more]

BLAST of Spo10643.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QBZ3_SPIOL	9.5e-102	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4X5_BETVU	2.7e-88	91.2	Uncharacterized protein OS=Bet...	[more]
A0A103YAQ1_CYNCS	1.4e-76	82.6	Nucleotide-binding, alpha-beta...	[more]
V4VGM9_9ROSI	5.3e-76	80.6	Uncharacterized protein OS=Cit...	[more]
V4TEF9_9ROSI	1.3e-74	79.5	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo10643.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RSZ22_ARATH	8.7e-64	68.5	Serine/arginine-rich splicing ...	[more]
RZ22A_ARATH	2.4e-61	68.5	Serine/arginine-rich splicing ...	[more]
RZ21A_ORYSJ	1.3e-59	67.1	Serine/arginine-rich splicing ...	[more]
RSZ21_ARATH	1.7e-59	68.5	Serine/arginine-rich splicing ...	[more]
RSZ21_ORYSJ	3.8e-59	65.9	Serine/arginine-rich splicing ...	[more]

BLAST of Spo10643.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G31580.1	4.9e-65	68.5	serine/arginine-rich 22	[more]
AT2G24590.1	1.3e-62	68.5	RNA recognition motif and CCHC...	[more]
AT1G23860.1	9.5e-61	68.5	RS-containing zinc finger prot...	[more]
AT3G53500.2	1.5e-18	42.1	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G37340.1	5.5e-16	42.6	arginine/serine-rich zinc knuc...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..61 score: 6.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..69 score: 2.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..73 score: 15
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 87..106 score: 4.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 90..105 score: 7.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 90..106 score: 7.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 90..105 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 82..107 score: 1.7
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 2..78 score: 1.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..85 score: 4.07
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 3..99 score: 8.9E-14coord: 131..181 score: 8.9
None	No IPR available	PANTHER	PTHR23147:SF1	SUBFAMILY NOT NAMED	coord: 3..99 score: 8.9E-14coord: 131..181 score: 8.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0004650	polygalacturonase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20638	0.73	Barchart \| Table
Spo04444	0.69	Barchart \| Table
Spo23293	0.68	Barchart \| Table
Spo10742	0.67	Barchart \| Table
Spo26915	0.67	Barchart \| Table
Spo23747	0.66	Barchart \| Table