Spo10533 (gene) | SpinachBase

Overview


Name	Spo10533
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Transcription factor bHLH144 (Basic helix-loop-helix protein 144) (AtbHLH144) (bHLH 144) (Transcription factor EN 130) (bHLH transcription factor bHLH144)
Location	Super_scaffold_120 : 139045 .. 139896 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAATAACCGGAAGTGTTCGAATAGACGAGGGGTGGCCCCTCTGGAAAATCAGGGTTGGGTAAATGGGCAGCATAATGTCTCTCCTGCATCTGCCTTTGGTGGAAGTTTACCATCGGCCTCAAAAATGCCAAGACCTGTGCATGATATTGAGTTTCAGCCTTCTGAAGTATGCCCTCAGAATTTCATTATTGTGGATGAAGATGCAAACCAAAGTCGGATCATGTACCATCCTGGAATTGCACATAACTTAAGCTATCCTAACATGGATTTCCATGAAACTCCCAACGGAGAAATTACTCAGGAGAATTTTGGGAATAATTTTGAAGGAGGCATTGTTTCTCCAGATATGGAGGATTCAGATTACATTGACTTATTAATGAGCTTAGATGAAAATCAAGGGGAATCTGAAGAGGAAGAAGTAAGTACAGCAGGAACTCAAGGTTATGATGGTAGCAGTTCTCCTGAATCGTTCTGCAATTACACAACAAAATGCAGAAAGGCAACATACCCTTGTTCCGTCCAAAGGGCATCCACTAGTGGCAGCAGCCACAATGAAAACAAAAGAAAAGAAGCACGCAAGATGGTCAAGGTACTTCGAGGAATGGTTCCTGGAGGTGATCAGATGAATACTGCAGCTGTTTTCGATGCAGCTGTTCATCATTTGAAGGGGTTAGAGGGCAAGGTGCAAAGGCTCGGACTAAGTAATCACAAGCATTTTCCTTGAACCACTAATTTGTTGTTTCTTGCTCGACTCTTGGCTAAACAGGATGGATATGAAGCTAAACTGTCAGTAATTGTTCTTCTTCTGCAGTCTGCACTGCTACAATTTCACCATTATCTTTGCTGA

mRNA sequence

ATGCATAATAACCGGAAGTGTTCGAATAGACGAGGGGTGGCCCCTCTGGAAAATCAGGGTTGGGTAAATGGGCAGCATAATGTCTCTCCTGCATCTGCCTTTGGTGGAAGTTTACCATCGGCCTCAAAAATGCCAAGACCTGTGCATGATATTGAGTTTCAGCCTTCTGAAGTATGCCCTCAGAATTTCATTATTGTGGATGAAGATGCAAACCAAAGTCGGATCATGTACCATCCTGGAATTGCACATAACTTAAGCTATCCTAACATGGATTTCCATGAAACTCCCAACGGAGAAATTACTCAGGAGAATTTTGGGAATAATTTTGAAGGAGGCATTGTTTCTCCAGATATGGAGGATTCAGATTACATTGACTTATTAATGAGCTTAGATGAAAATCAAGGGGAATCTGAAGAGGAAGAAGTAAGTACAGCAGGAACTCAAGGTTATGATGGTAGCAGTTCTCCTGAATCGTTCTGCAATTACACAACAAAATGCAGAAAGGCAACATACCCTTGTTCCGTCCAAAGGGCATCCACTAGTGGCAGCAGCCACAATGAAAACAAAAGAAAAGAAGCACGCAAGATGGTCAAGGTACTTCGAGGAATGGTTCCTGGAGGTGATCAGATGAATACTGCAGCTGTTTTCGATGCAGCTGTTCATCATTTGAAGGGGTTAGAGGGCAAGGATGGATATGAAGCTAAACTGTCAGTAATTGTTCTTCTTCTGCAGTCTGCACTGCTACAATTTCACCATTATCTTTGCTGA

Coding sequence (CDS)

ATGCATAATAACCGGAAGTGTTCGAATAGACGAGGGGTGGCCCCTCTGGAAAATCAGGGTTGGGTAAATGGGCAGCATAATGTCTCTCCTGCATCTGCCTTTGGTGGAAGTTTACCATCGGCCTCAAAAATGCCAAGACCTGTGCATGATATTGAGTTTCAGCCTTCTGAAGTATGCCCTCAGAATTTCATTATTGTGGATGAAGATGCAAACCAAAGTCGGATCATGTACCATCCTGGAATTGCACATAACTTAAGCTATCCTAACATGGATTTCCATGAAACTCCCAACGGAGAAATTACTCAGGAGAATTTTGGGAATAATTTTGAAGGAGGCATTGTTTCTCCAGATATGGAGGATTCAGATTACATTGACTTATTAATGAGCTTAGATGAAAATCAAGGGGAATCTGAAGAGGAAGAAGTAAGTACAGCAGGAACTCAAGGTTATGATGGTAGCAGTTCTCCTGAATCGTTCTGCAATTACACAACAAAATGCAGAAAGGCAACATACCCTTGTTCCGTCCAAAGGGCATCCACTAGTGGCAGCAGCCACAATGAAAACAAAAGAAAAGAAGCACGCAAGATGGTCAAGGTACTTCGAGGAATGGTTCCTGGAGGTGATCAGATGAATACTGCAGCTGTTTTCGATGCAGCTGTTCATCATTTGAAGGGGTTAGAGGGCAAGGATGGATATGAAGCTAAACTGTCAGTAATTGTTCTTCTTCTGCAGTCTGCACTGCTACAATTTCACCATTATCTTTGCTGA

Protein sequence

MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCPQNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMEDSDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRASTSGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGKDGYEAKLSVIVLLLQSALLQFHHYLC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10533.1	Spo10533.1	mRNA

Homology

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BLAST of Spo10533.1 vs. NCBI nr
Match: gi|902233327|gb|KNA23000.1| (hypothetical protein SOVF_027880 [Spinacia oleracea])

HSP 1 Score: 468.0 bits (1203), Expect = 1.100e-128
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP
Sbjct: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED 120
           QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED
Sbjct: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED 120

Query: 121 SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST 180
           SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST
Sbjct: 121 SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST 180

Query: 181 SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK 230
           SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK
Sbjct: 181 SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK 229

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BLAST of Spo10533.1 vs. NCBI nr
Match: gi|731373901|ref|XP_010666789.1| (PREDICTED: transcription factor bHLH144-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 290.4 bits (742), Expect = 3.000e-75
Identity = 156/229 (68.12%), Postives = 179/229 (78.17%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           M N R  S RRG+ P ENQ  VN   NVSPASAF G LPSA KMPR +HD++FQPSE+CP
Sbjct: 1   MQNTRNFSIRRGLVPPENQTRVNEFDNVSPASAFVGILPSAPKMPRSLHDVQFQPSEICP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED 120
           QNF+IVDE    S+IM++P IA  LSYP+MDFHET N E T+E   NNF GG  SP +ED
Sbjct: 61  QNFVIVDETDYHSQIMFNPAIAQTLSYPHMDFHETSNRESTEEKHENNF-GGNSSPLIED 120

Query: 121 SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST 180
           S+YIDLLMSLD+ Q  SEEEEVSTA TQG+DGSSSPES CNY +K +K TYP S++R+S 
Sbjct: 121 SEYIDLLMSLDD-QENSEEEEVSTARTQGHDGSSSPESCCNYASKSQKVTYPSSIKRSSA 180

Query: 181 SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK 230
            GSSH+  KRKEARKMVK LRGMVPG D+MNTAAVFDAAV +LKGLE K
Sbjct: 181 GGSSHSVKKRKEARKMVKALRGMVPGDDEMNTAAVFDAAVVYLKGLEDK 227

[Close]

BLAST of Spo10533.1 vs. NCBI nr
Match: gi|1009106946|ref|XP_015877093.1| (PREDICTED: transcription factor bHLH144-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 167.9 bits (424), Expect = 2.200e-38
Identity = 110/225 (48.89%), Postives = 138/225 (61.33%), Query Frame = 1


		  
Query: 15  PLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCPQNFIIVDEDANQSR 74
           PL NQ   N  H V  ASAFG  LP  SK  +P HD+E Q SEVCP+NFII D+  + S+
Sbjct: 14  PLVNQVGNNYMH-VPVASAFGAVLPPGSKHLKPFHDVELQSSEVCPKNFIIFDQTDHHSQ 73

Query: 75  IMYHPGIAHNLSYPNMDFHETPNGEITQENFGN---NFEGGIVSPDMEDSDYIDLLMSLD 134
           IMY+P +AH  + P ++ H T       +NFG    N    + SP  EDSD ID L+S +
Sbjct: 74  IMYNPAMAHRFNTPGLNIHST----YFHDNFGGKEINDVTEMSSPLEEDSDDIDALLSSE 133

Query: 135 EN-------QGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAS-TSGS 194
           E+       Q E +EEEVSTA T G  GSSSPES   Y +K RK     SVQ++S  SGS
Sbjct: 134 EDEEEEEEEQAEYDEEEVSTARTYGNYGSSSPESCSTYGSKARKNRASSSVQKSSGNSGS 193

Query: 195 SHN-ENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           S N E KR+  +KMV+ LRG+VPGG+QMN+  V D AV +LK L+
Sbjct: 194 SCNSERKRQRVKKMVRALRGIVPGGNQMNSVTVLDEAVRYLKSLK 233

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BLAST of Spo10533.1 vs. NCBI nr
Match: gi|1000965523|ref|XP_015575001.1| (PREDICTED: transcription factor bHLH144 [Ricinus communis])

HSP 1 Score: 167.5 bits (423), Expect = 2.900e-38
Identity = 110/232 (47.41%), Postives = 145/232 (62.50%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           M +++    ++ V    NQ   N  H V  AS+F  + P+A+K   PVH IEFQPSEVCP
Sbjct: 1   MQSDQHFRRKKAVPHFANQRGNNYMH-VPVASSFPAAPPTAAKHLMPVHGIEFQPSEVCP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNF---EGGIVSPD 120
           +NFII D+  ++S+IM+HP +AH  + P ++ H +      QEN+        G  +S  
Sbjct: 61  KNFIIFDQTDHRSQIMFHPTVAHRFNGPGLNMHAS----YFQENYEREAVDDTGREMSSL 120

Query: 121 MEDSDYIDLLMSLDEN-QGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQ 180
            EDSD ID L+SL+E  Q E +EEEVSTA T G  GSSSP+S   Y +K RK T   SVQ
Sbjct: 121 KEDSDDIDALLSLEEEEQDECDEEEVSTARTYGNYGSSSPDSCSTYGSKPRK-TGSSSVQ 180

Query: 181 RASTSGSS-HNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           ++  SGSS   E KR++ +KMVK LRG+VPGGDQMNT  V D AV +LK L+
Sbjct: 181 KSPGSGSSCSTERKRQKMKKMVKALRGIVPGGDQMNTVTVLDEAVRYLKSLK 226

[Close]

BLAST of Spo10533.1 vs. NCBI nr
Match: gi|566193366|ref|XP_002316733.2| (hypothetical protein POPTR_0011s02710g [Populus trichocarpa])

HSP 1 Score: 164.5 bits (415), Expect = 2.500e-37
Identity = 110/233 (47.21%), Postives = 141/233 (60.52%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           MH++R   ++  + PL NQ   N  H    A+ F    P A+K   PVH IEFQ SE+CP
Sbjct: 1   MHSDRYFRSKEAMPPLTNQVDNNNMH-FPVATTFAAVQPLAAKHLMPVHGIEFQSSEICP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGN----NFEGGIVSP 120
           +NFII D+  ++S++MY+P +AHN   P+ + H T      QENF      N E  I S 
Sbjct: 61  RNFIIFDQADHRSQVMYNPAVAHNHGGPDFNIHAT----YIQENFERTDTYNVEREISSS 120

Query: 121 DMEDSDYIDLLMSLDENQGES-EEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSV 180
             EDSD ID LMSL+E + E  + EEVSTA T    GSSSP+S  +Y  K  K     SV
Sbjct: 121 LKEDSDDIDALMSLEEEEPEECDGEEVSTARTCRNYGSSSPDSCSSYGAKPMK--NGSSV 180

Query: 181 QRASTSGSSHN-ENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           Q+ S+SGSS N E KR++ + MVK LRG+VPGGDQMNT  V D AV +LK L+
Sbjct: 181 QKCSSSGSSSNSERKRQKMKTMVKTLRGIVPGGDQMNTVTVLDEAVRYLKSLK 226

[Close]

BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTY3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_027880 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 7.300e-129
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP
Sbjct: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED 120
           QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED
Sbjct: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED 120

Query: 121 SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST 180
           SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST
Sbjct: 121 SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST 180

Query: 181 SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK 230
           SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK
Sbjct: 181 SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK 229

[Close]

BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B3T6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_004450 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.100e-75
Identity = 156/229 (68.12%), Postives = 179/229 (78.17%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           M N R  S RRG+ P ENQ  VN   NVSPASAF G LPSA KMPR +HD++FQPSE+CP
Sbjct: 1   MQNTRNFSIRRGLVPPENQTRVNEFDNVSPASAFVGILPSAPKMPRSLHDVQFQPSEICP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDMED 120
           QNF+IVDE    S+IM++P IA  LSYP+MDFHET N E T+E   NNF GG  SP +ED
Sbjct: 61  QNFVIVDETDYHSQIMFNPAIAQTLSYPHMDFHETSNRESTEEKHENNF-GGNSSPLIED 120

Query: 121 SDYIDLLMSLDENQGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRAST 180
           S+YIDLLMSLD+ Q  SEEEEVSTA TQG+DGSSSPES CNY +K +K TYP S++R+S 
Sbjct: 121 SEYIDLLMSLDD-QENSEEEEVSTARTQGHDGSSSPESCCNYASKSQKVTYPSSIKRSSA 180

Query: 181 SGSSHNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLEGK 230
            GSSH+  KRKEARKMVK LRGMVPG D+MNTAAVFDAAV +LKGLE K
Sbjct: 181 GGSSHSVKKRKEARKMVKALRGMVPGDDEMNTAAVFDAAVVYLKGLEDK 227

[Close]

BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
Match: B9S150_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0633820 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.000e-38
Identity = 110/232 (47.41%), Postives = 145/232 (62.50%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           M +++    ++ V    NQ   N  H V  AS+F  + P+A+K   PVH IEFQPSEVCP
Sbjct: 1   MQSDQHFRRKKAVPHFANQRGNNYMH-VPVASSFPAAPPTAAKHLMPVHGIEFQPSEVCP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNF---EGGIVSPD 120
           +NFII D+  ++S+IM+HP +AH  + P ++ H +      QEN+        G  +S  
Sbjct: 61  KNFIIFDQTDHRSQIMFHPTVAHRFNGPGLNMHAS----YFQENYEREAVDDTGREMSSL 120

Query: 121 MEDSDYIDLLMSLDEN-QGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQ 180
            EDSD ID L+SL+E  Q E +EEEVSTA T G  GSSSP+S   Y +K RK T   SVQ
Sbjct: 121 KEDSDDIDALLSLEEEEQDECDEEEVSTARTYGNYGSSSPDSCSTYGSKPRK-TGSSSVQ 180

Query: 181 RASTSGSS-HNENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           ++  SGSS   E KR++ +KMVK LRG+VPGGDQMNT  V D AV +LK L+
Sbjct: 181 KSPGSGSSCSTERKRQKMKKMVKALRGIVPGGDQMNTVTVLDEAVRYLKSLK 226

[Close]

BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
Match: B9I102_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02710g PE=4 SV=2)

HSP 1 Score: 164.5 bits (415), Expect = 1.700e-37
Identity = 110/233 (47.21%), Postives = 141/233 (60.52%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           MH++R   ++  + PL NQ   N  H    A+ F    P A+K   PVH IEFQ SE+CP
Sbjct: 1   MHSDRYFRSKEAMPPLTNQVDNNNMH-FPVATTFAAVQPLAAKHLMPVHGIEFQSSEICP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGN----NFEGGIVSP 120
           +NFII D+  ++S++MY+P +AHN   P+ + H T      QENF      N E  I S 
Sbjct: 61  RNFIIFDQADHRSQVMYNPAVAHNHGGPDFNIHAT----YIQENFERTDTYNVEREISSS 120

Query: 121 DMEDSDYIDLLMSLDENQGES-EEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSV 180
             EDSD ID LMSL+E + E  + EEVSTA T    GSSSP+S  +Y  K  K     SV
Sbjct: 121 LKEDSDDIDALMSLEEEEPEECDGEEVSTARTCRNYGSSSPDSCSSYGAKPMK--NGSSV 180

Query: 181 QRASTSGSSHN-ENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           Q+ S+SGSS N E KR++ + MVK LRG+VPGGDQMNT  V D AV +LK L+
Sbjct: 181 QKCSSSGSSSNSERKRQKMKTMVKTLRGIVPGGDQMNTVTVLDEAVRYLKSLK 226

[Close]

BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
Match: D6BP02_HEVBR (BHLH1 transcription factor OS=Hevea brasiliensis GN=bHLH1 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.600e-37
Identity = 103/230 (44.78%), Postives = 142/230 (61.74%), Query Frame = 1


		  
Query: 1   MHNNRKCSNRRGVAPLENQGWVNGQHNVSPASAFGGSLPSASKMPRPVHDIEFQPSEVCP 60
           M ++++    + V    NQ   N  H +  A +F  +LP   K   P H IEFQPSEVCP
Sbjct: 1   MQSDQQFQPNKAVPHFANQRGNNYMH-IPVAPSFAAALPPTGKHLMPAHGIEFQPSEVCP 60

Query: 61  QNFIIVDEDANQSRIMYHPGIAHNLSYPNMDFHETPNGEITQENFGNNFEGGIVSPDM-E 120
           +NFII D++ ++S+IM+HP +AH  S P ++ + + N E       N  E  + S  + E
Sbjct: 61  KNFIIFDQNDHRSQIMFHPAVAHKFSGPGLNMYGSYNPENFDREEINGIEREVSSSSLKE 120

Query: 121 DSDYIDLLMSLDEN-QGESEEEEVSTAGTQGYDGSSSPESFCNYTTKCRKATYPCSVQRA 180
           DSD ID L+SL+E+ Q E +EEEVSTA T G  GS+SP+S+    +K  K     S+Q +
Sbjct: 121 DSDDIDALLSLEEDEQDEYDEEEVSTARTYGNHGSNSPDSYSTCGSKPWK-NGSSSIQNS 180

Query: 181 STSGSSHN-ENKRKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           S +GSS N E KR++ +KMVK LRG+VPGGDQMNT  V D AV +LK L+
Sbjct: 181 SGNGSSINSERKRQKMKKMVKALRGIVPGGDQMNTVMVIDEAVRYLKSLK 228

[Close]

BLAST of Spo10533.1 vs. ExPASy Swiss-Prot
Match: BH144_ARATH (Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.700e-25
Identity = 84/220 (38.18%), Postives = 126/220 (57.27%), Query Frame = 1


		  
Query: 26  HN-VSPASAFGGSLPSASKMPRPVHDIEFQPSEVCPQNFIIVDEDANQSRIMYHPGIAHN 85
           HN  +  S++    P  +K+P   H +E QPS VCP+NF+I D+  ++S++MYHP + H 
Sbjct: 19  HNPYASGSSYDALFPPCAKLP--YHGVELQPSAVCPKNFVIFDQTYDRSQVMYHPELTHK 78

Query: 86  L-SYPNM-DFHETPNGEITQENFGN--NFEGGIVSPDMEDSDYIDLLMSLDE-------N 145
           L + P++ +   T   E    ++GN  N+E  + S   ED + ID L+S DE       N
Sbjct: 79  LMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALLSADEDYEENDDN 138

Query: 146 QGE---SEEEEVSTAGTQGYD-GSSSPESFC-NYTTKCRKATYPCSVQRASTSGSSHNEN 205
           +GE    + EEVSTA T   D G+++ ES C +Y               + ++ SS+N+ 
Sbjct: 139 EGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSASSSNNDG 198

Query: 206 K-RKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           K RK+ +KM+ VLR +VPGG+QMNTA V D AV +LK L+
Sbjct: 199 KGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLK 236

[Close]

BLAST of Spo10533.1 vs. TAIR (Arabidopsis)
Match: AT1G29950.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 2.100e-26
Identity = 84/220 (38.18%), Postives = 126/220 (57.27%), Query Frame = 1


		  
Query: 26  HN-VSPASAFGGSLPSASKMPRPVHDIEFQPSEVCPQNFIIVDEDANQSRIMYHPGIAHN 85
           HN  +  S++    P  +K+P   H +E QPS VCP+NF+I D+  ++S++MYHP + H 
Sbjct: 19  HNPYASGSSYDALFPPCAKLP--YHGVELQPSAVCPKNFVIFDQTYDRSQVMYHPELTHK 78

Query: 86  L-SYPNM-DFHETPNGEITQENFGN--NFEGGIVSPDMEDSDYIDLLMSLDE-------N 145
           L + P++ +   T   E    ++GN  N+E  + S   ED + ID L+S DE       N
Sbjct: 79  LMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALLSADEDYEENDDN 138

Query: 146 QGE---SEEEEVSTAGTQGYD-GSSSPESFC-NYTTKCRKATYPCSVQRASTSGSSHNEN 205
           +GE    + EEVSTA T   D G+++ ES C +Y               + ++ SS+N+ 
Sbjct: 139 EGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSASSSNNDG 198

Query: 206 K-RKEARKMVKVLRGMVPGGDQMNTAAVFDAAVHHLKGLE 228
           K RK+ +KM+ VLR +VPGG+QMNTA V D AV +LK L+
Sbjct: 199 KGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLK 236

The following BLAST results are available for this feature:

BLAST of Spo10533.1 vs. NCBI nr
BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
BLAST of Spo10533.1 vs. ExPASy Swiss-Prot
BLAST of Spo10533.1 vs. TAIR (Arabidopsis)

BLAST of Spo10533.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233327\|gb\|KNA23000.1\|	1.1e-128	100.	hypothetical protein SOVF_0278...	[more]
gi\|731373901\|ref\|XP_010666789.1\|	3.0e-75	68.1	PREDICTED: transcription facto...	[more]
gi\|1009106946\|ref\|XP_015877093.1\|	2.2e-38	48.8	PREDICTED: transcription facto...	[more]
gi\|1000965523\|ref\|XP_015575001.1\|	2.9e-38	47.4	PREDICTED: transcription facto...	[more]
gi\|566193366\|ref\|XP_002316733.2\|	2.5e-37	47.2	hypothetical protein POPTR_001...	[more]

BLAST of Spo10533.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RTY3_SPIOL	7.3e-129	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B3T6_BETVU	2.1e-75	68.1	Uncharacterized protein OS=Bet...	[more]
B9S150_RICCO	2.0e-38	47.4	Putative uncharacterized prote...	[more]
B9I102_POPTR	1.7e-37	47.2	Uncharacterized protein OS=Pop...	[more]
D6BP02_HEVBR	6.6e-37	44.7	BHLH1 transcription factor OS=...	[more]

BLAST of Spo10533.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
BH144_ARATH	3.7e-25	38.1	Transcription factor bHLH144 O...	[more]

BLAST of Spo10533.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G29950.1	2.1e-26	38.1	basic helix-loop-helix (bHLH) ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 15..226 score: 1.2
None	No IPR available	PANTHER	PTHR12565:SF155	TRANSCRIPTION FACTOR BHLH144	coord: 15..226 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0051301	cell division
biological_process	GO:0010089	xylem development
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0048765	root hair cell differentiation
biological_process	GO:0008152	metabolic process
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0033044	regulation of chromosome organization
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0010014	meristem initiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0048449	floral organ formation
biological_process	GO:0006897	endocytosis
biological_process	GO:0048589	developmental growth
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0071555	cell wall organization
biological_process	GO:0016049	cell growth
biological_process	GO:0007155	cell adhesion
biological_process	GO:0045010	actin nucleation
biological_process	GO:0033043	regulation of organelle organization
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0030140	trans-Golgi network transport vesicle
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000785	chromatin
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0035091	phosphatidylinositol binding
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005488	binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11979	0.73	Barchart \| Table
Spo12348	0.72	Barchart \| Table
Spo20244	0.70	Barchart \| Table
Spo16384	0.70	Barchart \| Table
Spo18253	0.70	Barchart \| Table
Spo18519	0.69	Barchart \| Table
Spo15305	0.69	Barchart \| Table
Spo23192	0.69	Barchart \| Table
Spo21171	0.69	Barchart \| Table
Spo05874	0.69	Barchart \| Table
Spo09567	0.69	Barchart \| Table
Spo30008	0.68	Barchart \| Table
Spo30023	0.68	Barchart \| Table
Spo15997	0.68	Barchart \| Table
Spo14856	0.67	Barchart \| Table
Spo01399	0.67	Barchart \| Table
Spo10784	0.67	Barchart \| Table
Spo14590	0.67	Barchart \| Table
Spo00535	0.67	Barchart \| Table
Spo17914	0.67	Barchart \| Table
Spo21595	0.67	Barchart \| Table
Spo15581	0.66	Barchart \| Table
Spo16088	0.66	Barchart \| Table
Spo09234	0.66	Barchart \| Table
Spo01313	0.66	Barchart \| Table
Spo02203	0.66	Barchart \| Table
Spo25649	0.66	Barchart \| Table
Spo14275	0.66	Barchart \| Table
Spo08851	0.66	Barchart \| Table
Spo19722	0.66	Barchart \| Table
Spo04973	0.66	Barchart \| Table
Spo20925	0.66	Barchart \| Table
Spo04703	0.66	Barchart \| Table
Spo01751	0.65	Barchart \| Table
Spo17921	0.65	Barchart \| Table
Spo12006	0.65	Barchart \| Table
Spo05455	0.65	Barchart \| Table