Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTGATTTAAACTTGTTGATGTTAAAACCGCGTTAATTGAGAAGCAGCGTTATAAAAACCCTTTACACCTCTTCACACCAAAAAGGCAATCCGAATCGCTTCACTTGTACACAAACCCCATCCTATCCTACTATTTATACTAATACTCCCCTCTTACAATTTCCTATCATATTCTGAAATTCTTAATTATATTAATCTATCTTGATCTTTTGTTATCAAGTAAGTTATTAGCAAAGATGGCTGATGAGAGTATCAACTACAATGAGGCACCCGCTACCGTTGAGACTACCGATCGTGGTTTGTTTGATTTCATGAAGAAGAAGGATCACTCGTCCGATGTCGATGCCGTCGCCTCCGGTGTCGAAAAGGTTCACGTCTCCGAGCCTGTTGAGTGTAAGGAAGAGGACAGCAAACTTGTTCAGAAGTTCCATCGTTCCGACAGTTCTAGCTCTAGCTCTGTAAGTTAATTCATTTTTTGTAATTCTAATACTTGTATGTACGTAAGTCATTTTAGAGTTTTAATTTACGTACATACAAGTATTTCTTCAAATTAACTTCTTACCAGGCATAAGAGTCCTAATTTGACCTGAAATCCCTAATTAATTGCATCAAAATCGAATTACTTCAATTCAGACCCAAAATTAAAAGGCCCCAAATTGGGAGGAAATCCTAAATTTCGAATGAATTAAAATGGAGTGACAGAGGTTGCCGGTGAAGGATTAGTGGTCTCTGTCGCTGATCATCAGAATACCTCCGATGTCGTCGTCGATCATCTTTTTAGATCATCTTGAGTCAAAATTTGTTTTTTTTTAATTTCCCCTGTCTCTTTCATAAGTCATAACTAGGGGTGTTAATGAGCCGAGCCTGCTCGTGAACTATTTGATACTCGGCTCGCTAAAGCTCGGTCAAAGTTCGGCTCGGGCGGGCTCGACTCGAGCTCGGGTTCGGCTCGAGATCTTAACAAGCCAAGCCTGAGCTATCCTAAGCTCGGCTCGAAAGCTCGTGAGCAAGCTCGAGCTTTAATAATACTGTAATTTTTACTACTTAAGACTATCCCACATTGGTTATTGCAAAAGAATGAAAGAATGAGATGCATATAAATTAAACTCATATTGCAATAATCATACTTTATATGGGCCATTTGGTTTGTCAAGCTGAGGTGTTTCTCTTTGAAGCATTTCGTCAAGGTCTTGATGAGGAAATGGAAAGGGGTGCGAATGTAAAGTGACTAAAGGACTGACCCCCAAATGTGAGGATCTAAGAGTTCTTGATACACCAATTGCTGAAAATTCCTTCAGGGGAACGACCATTGGAGCTGCCATGACTGGTCTAAGGCTTATTATAGAACTATAGAAGGAATGAACATGAGATTTATTTGTTGGCAATATGGCATTCAACCAAATCTCAAACAATTGTGCACGTTGCATTACACTTTTGGAGGACAATTTAAAATAGAGAATCACATTTGTTAATGGCAGTAGTTGAGACTTTATTACTGACAAAGTTTCATTGTCCCATATCGGCAAAAGCAAATAAGTAGCCAACTAGAATCACTTATAAAACTAAATGACTATTAGGCTGTTTTGATATGGCATCAAATAATACCATTTATTGGGCCCTATAAAGTCTAATATTTTGTGTCTATTTTGGGCTTAGCTTATTTTGAATTGGGCTACAGTTATTCCTATGCTTGAACAAAGCACGAGCCGAATCGAGCTTGGTTTCGAGCCCGAGCTCGAGCCGAACCGAGCCTAGGTTCGAGCCCGAGTTCGAGCTCAGTTTTCAAGGCTCGTCGAGCTTCGAGCTCGAGCCGAGCCTAAGGTTAGAAGTTTCGAGCTCGAGCCGAGCTTGCCTAAGTTCGGTCTCGGCTCGGCTCGTTAACACCCCTAGTCATAACTCATAACCCCCGAGTAGTATTGGCCTATTGCCCTATTGGGTTACTCGGTTCCATAAAGTTTTTTTATTAAAAAAACAAAACAAAGAGTAAGCTAATTTGCTAAAAGATGCCCATCCATTTGGCTTTCCTGCCAAGTATTCTCAATTTCTAACGGGTGGCAGTAATGATACATTTAAACTACTACCTACGTTTTTACTTTTCGTCTTCTTTTTTGGTTTCAAAATATTTTTTATAATTTTTTTATATTATCATATAAAAAAATGCTTTAACATTCTATCAAAATTTATGTCAAATGATTAACCAACGCTCGTGATAACGTCACCTAATTTTAGTTTCCTGTTCTGTTCACCTTATTTACACTTATTTCAGTTCAGTTAAGTTCAGTTAAGTTCAGATAAGCTCAGGAAAAATAACGGTTGGCAAGTACAACTTATAACTAAAATAAGTTTTAATAAGTTCTGATAAGTTCAGTTAAGTTCAGATAAGTTCAGATAAGATAAGTTCAGGAAAAATAAGTGGAAATCAGGCGAATAAAACGCACTCTTATTTTTCTCGCAGCAACCAAGATTAAATTCACTTATTTAGTTTTTTTTACGAGATTATGAAGATTTCCAAATCTATGCATTTTAGCATTGTTTGTACGTGAAAATAAGTTTAGTGAGTCATGCTACATCATTTTAGCCACTCCTTTTCTCAAATGGGTAGGATCTCACAGTACTACAATCCGATTCTACTGATTCGATCTTACCTCCCTCACTGATCCTCATCCATCCAAAGTAGGATCCTGATCTTGACGACTTTAAAAGGTTAATAAAGAAAATATTATGACGATCCTAAGGGATGACAACCCTTAAAATATATAGAATATAAAATAATATATAAAGTGAAGTTAATTGAAGAGACAAAGTGTTATAAGTTAAATTTTTAACGTAATTTGTAACCAATTATAATTCATTAATATTTCTGTTTCTGAAAGATTGCCCCCATATATTTTATAAATATTTTTGATAGACTCTTACCTTATTTGGTCTGTGATCCAATACAATTTATCTCATACATCATTATTTATCTAACTAAATTACAAATCTAGCTACCTATTTACTTTGGGTATATCCAATTCTTAATAAAATCATTTTTGTATGTTTTCTAAAATGAGTGCTTAGTAGTTGTTTAGAAATTTGTGACAAAATCACATATTGATTAGCTTTCTATTAAAGTCTTATGACTAATAAGAAGTTTGACATGTAATTTCGCAGTCCGATGAAGAGGATGATGAAGAGAAGAAGAGGAGAAAGAAGGAAAAGAAAGAGAAAAAAGCAGGACTGAAAGAGAAGATTCATGAGAAATTAGGAGGACACAAGGATGAGCACGACGATACAAACGTGCCAATTGAGCAAATCCATGTGCAAGAGAATGTATACTCTGAACCATCTAATTATACTAAACCTGTCCAACATGATCACAACAAAGAGGAGGAAAAGAAGGGTGGTTTCCTTGACAAAATCAAGGAGAAACTCCCCGGTCAGCATAAGGATAAGGCCGCAGAGCCCGAGGTGGTTGTGTCGGTGCCGGTGGGCGAGCCGTGTGTCGAGGGAGATAAGGAGAAGAAGGGATTCTTGGAGAAGATCAAGGAGAAGATCCCTGGGTTTCACTCAAAGAATGAGGCTGAGGAGAAGAAGGATCATGAGGAGAAAAAAGAGGGATATTAAATTTAAATAATTGTTATGTTTAATAAGAATTAATTAGGTACTTTTTAAAAGTAATTGATGCTTTGTTTAAGGAAGGAAAAAAAAGGATGAGAGTTGTTATTTTCATTATTTGATTTGATTTGATTTGATTTGATTTGATGAATGCTTTGTAGTGATGTGAGTATTGTGGGGCTTTGAGGTTCAAAGTTTTTCATGATGTATATGCAAAGTGCAATTATTTGCTTATTGGAATATATGAATGTTTTGTTTTTTTACACGTTATTATTGTTAAGGAATCAATGGATTTAGACTTTAGAGCATGTGAAATGTTTTTATACCTTGTCCCTTGCCTCGTTACAAATACCACGGAGAGTGAGGCTAGCAAGTTAAAACGCGGGTCAATAACGGAAAATCTAAAAACACAATTACAATTTTAAACAATTACATGTATGATTCCTTCGAAAATCCTCTTTGGAAGACTTCGAAGAAACAATCTGTTAAGATACATATTATATGACTCTTTGAATATTAAGGGACGGAGGGAGTAGCAACAGTGACGGCGCTAGGATCTCCTGGTCCGGCGGGAGGGGATGGCCTCATTAGGGATGATACAAGAAGAATGGTATGTGCTTTTACGCATAACATGGGGGTCTGCTCTTCCTTTAAGGCTGAAATCAAGGCAGTGGAACATGGTCTAGAGCTAGCAATGAGAATGGGAATCTCCAAACTGCAAGTCCAAATGGACAACCAAGCAGCAGTCCTAGCCATTAGACGTCTAGAAGATTATGGAGGCGAGTGTGTGCACAACATTAACAAATGCAGACAGTTTCTAGCTAACCAAGCATGGCAAACAAAAATTATACATGTGTTCAGAGAAGGTAATCGAGCTGCGGATTGGCTAGCAAATCAAGGTGTCACCCAGAACAACAAGATAGAGTTGATTCAATTCCCGCCCCTAGCTTTAGGA GTTGATTTAAACTTGTTGATGTTAAAACCGCGTTAATTGAGAAGCAGCGTTATAAAAACCCTTTACACCTCTTCACACCAAAAAGGCAATCCGAATCGCTTCACTTGTACACAAACCCCATCCTATCCTACTATTTATACTAATACTCCCCTCTTACAATTTCCTATCATATTCTGAAATTCTTAATTATATTAATCTATCTTGATCTTTTGTTATCAAGTAAGTTATTAGCAAAGATGGCTGATGAGAGTATCAACTACAATGAGGCACCCGCTACCGTTGAGACTACCGATCGTGGTTTGTTTGATTTCATGAAGAAGAAGGATCACTCGTCCGATGTCGATGCCGTCGCCTCCGGTGTCGAAAAGGTTCACGTCTCCGAGCCTGTTGAGTGTAAGGAAGAGGACAGCAAACTTGTTCAGAAGTTCCATCGTTCCGACAGTTCTAGCTCTAGCTCTTCCGATGAAGAGGATGATGAAGAGAAGAAGAGGAGAAAGAAGGAAAAGAAAGAGAAAAAAGCAGGACTGAAAGAGAAGATTCATGAGAAATTAGGAGGACACAAGGATGAGCACGACGATACAAACGTGCCAATTGAGCAAATCCATGTGCAAGAGAATGTATACTCTGAACCATCTAATTATACTAAACCTGTCCAACATGATCACAACAAAGAGGAGGAAAAGAAGGGTGGTTTCCTTGACAAAATCAAGGAGAAACTCCCCGGTCAGCATAAGGATAAGGCCGCAGAGCCCGAGGTGGTTGTGTCGGTGCCGGTGGGCGAGCCGTGTGTCGAGGGAGATAAGGAGAAGAAGGGATTCTTGGAGAAGATCAAGGAGAAGATCCCTGGGTTTCACTCAAAGAATGAGGCTGAGGAGAAGAAGGATCATGAGGAGAAAAAAGAGGGATATTAAATTTAAATAATTGTTATGTTTAATAAGAATTAATTAGGTACTTTTTAAAAGTAATTGATGCTTTGTTTAAGGAAGGAAAAAAAAGGATGAGAGTTGTTATTTTCATTATTTGATTTGATTTGATTTGATTTGATTTGATGAATGCTTTGTAGTGATGTGAGTATTGTGGGGCTTTGAGGTTCAAAGTTTTTCATGATGTATATGCAAAGTGCAATTATTTGCTTATTGGAATATATGAATGTTTTGTTTTTTTACACGTTATTATTGTTAAGGAATCAATGGATTTAGACTTTAGAGCATGTGAAATGTTTTTATACCTTGTCCCTTGCCTCGTTACAAATACCACGGAGAGTGAGGCTAGCAAGTTAAAACGCGGGTCAATAACGGAAAATCTAAAAACACAATTACAATTTTAAACAATTACATGTATGATTCCTTCGAAAATCCTCTTTGGAAGACTTCGAAGAAACAATCTGTTAAGATACATATTATATGACTCTTTGAATATTAAGGGACGGAGGGAGTAGCAACAGTGACGGCGCTAGGATCTCCTGGTCCGGCGGGAGGGGATGGCCTCATTAGGGATGATACAAGAAGAATGGTATGTGCTTTTACGCATAACATGGGGGTCTGCTCTTCCTTTAAGGCTGAAATCAAGGCAGTGGAACATGGTCTAGAGCTAGCAATGAGAATGGGAATCTCCAAACTGCAAGTCCAAATGGACAACCAAGCAGCAGTCCTAGCCATTAGACGTCTAGAAGATTATGGAGGCGAGTGTGTGCACAACATTAACAAATGCAGACAGTTTCTAGCTAACCAAGCATGGCAAACAAAAATTATACATGTGTTCAGAGAAGGTAATCGAGCTGCGGATTGGCTAGCAAATCAAGGTGTCACCCAGAACAACAAGATAGAGTTGATTCAATTCCCGCCCCTAGCTTTAGGA ATGGCTGATGAGAGTATCAACTACAATGAGGCACCCGCTACCGTTGAGACTACCGATCGTGGTTTGTTTGATTTCATGAAGAAGAAGGATCACTCGTCCGATGTCGATGCCGTCGCCTCCGGTGTCGAAAAGGTTCACGTCTCCGAGCCTGTTGAGTGTAAGGAAGAGGACAGCAAACTTGTTCAGAAGTTCCATCGTTCCGACAGTTCTAGCTCTAGCTCTTCCGATGAAGAGGATGATGAAGAGAAGAAGAGGAGAAAGAAGGAAAAGAAAGAGAAAAAAGCAGGACTGAAAGAGAAGATTCATGAGAAATTAGGAGGACACAAGGATGAGCACGACGATACAAACGTGCCAATTGAGCAAATCCATGTGCAAGAGAATGTATACTCTGAACCATCTAATTATACTAAACCTGTCCAACATGATCACAACAAAGAGGAGGAAAAGAAGGGTGGTTTCCTTGACAAAATCAAGGAGAAACTCCCCGGTCAGCATAAGGATAAGGCCGCAGAGCCCGAGGTGGTTGTGTCGGTGCCGGTGGGCGAGCCGTGTGTCGAGGGAGATAAGGAGAAGAAGGGATTCTTGGAGAAGATCAAGGAGAAGATCCCTGGGTTTCACTCAAAGAATGAGGCTGAGGAGAAGAAGGATCATGAGGAGAAAAAAGAGGGATATTAA MADESINYNEAPATVETTDRGLFDFMKKKDHSSDVDAVASGVEKVHVSEPVECKEEDSKLVQKFHRSDSSSSSSSDEEDDEEKKRRKKEKKEKKAGLKEKIHEKLGGHKDEHDDTNVPIEQIHVQENVYSEPSNYTKPVQHDHNKEEEKKGGFLDKIKEKLPGQHKDKAAEPEVVVSVPVGEPCVEGDKEKKGFLEKIKEKIPGFHSKNEAEEKKDHEEKKEGY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10299.1 vs. NCBI nr
Match: gi|902183845|gb|KNA10183.1| (hypothetical protein SOVF_146760 [Spinacia oleracea]) HSP 1 Score: 423.7 bits (1088), Expect = 2.000e-115 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
BLAST of Spo10299.1 vs. NCBI nr
Match: gi|557129718|gb|AGZ86543.1| (dehydrin [Atriplex halimus]) HSP 1 Score: 281.6 bits (719), Expect = 1.200e-72 Identity = 171/237 (72.15%), Postives = 193/237 (81.43%), Query Frame = 1
BLAST of Spo10299.1 vs. NCBI nr
Match: gi|506458607|gb|AGM15308.1| (dehydrin 1 [Chenopodium quinoa]) HSP 1 Score: 263.5 bits (672), Expect = 3.500e-67 Identity = 166/230 (72.17%), Postives = 184/230 (80.00%), Query Frame = 1
BLAST of Spo10299.1 vs. NCBI nr
Match: gi|731375198|ref|XP_010667179.1| (PREDICTED: phosphoprotein ECPP44-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 257.3 bits (656), Expect = 2.500e-65 Identity = 162/240 (67.50%), Postives = 190/240 (79.17%), Query Frame = 1
BLAST of Spo10299.1 vs. NCBI nr
Match: gi|327081033|gb|AEA29617.1| (dehydrin [Suaeda glauca]) HSP 1 Score: 219.5 bits (558), Expect = 5.700e-54 Identity = 155/251 (61.75%), Postives = 175/251 (69.72%), Query Frame = 1
BLAST of Spo10299.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU12_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_146760 PE=3 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 1.400e-115 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
BLAST of Spo10299.1 vs. UniProtKB/TrEMBL
Match: U5Y959_9CARY (Dehydrin OS=Atriplex halimus GN=DHN PE=2 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 8.500e-73 Identity = 171/237 (72.15%), Postives = 193/237 (81.43%), Query Frame = 1
BLAST of Spo10299.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QNF4_CHEQI (Dehydrin 1 OS=Chenopodium quinoa GN=DHN-1 PE=2 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 2.400e-67 Identity = 166/230 (72.17%), Postives = 184/230 (80.00%), Query Frame = 1
BLAST of Spo10299.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B6M2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_007160 PE=3 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 1.700e-65 Identity = 162/240 (67.50%), Postives = 190/240 (79.17%), Query Frame = 1
BLAST of Spo10299.1 vs. UniProtKB/TrEMBL
Match: H8YHV1_9CARY (Dehydrin OS=Suaeda glauca PE=2 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 4.000e-54 Identity = 155/251 (61.75%), Postives = 175/251 (69.72%), Query Frame = 1
BLAST of Spo10299.1 vs. ExPASy Swiss-Prot
Match: COR47_ARATH (Dehydrin COR47 OS=Arabidopsis thaliana GN=COR47 PE=1 SV=2) HSP 1 Score: 120.2 bits (300), Expect = 3.000e-26 Identity = 106/257 (41.25%), Postives = 141/257 (54.86%), Query Frame = 1
BLAST of Spo10299.1 vs. ExPASy Swiss-Prot
Match: ECP44_DAUCA (Phosphoprotein ECPP44 OS=Daucus carota GN=ECPP44 PE=1 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 6.600e-26 Identity = 109/236 (46.19%), Postives = 137/236 (58.05%), Query Frame = 1
BLAST of Spo10299.1 vs. ExPASy Swiss-Prot
Match: ERD10_ARATH (Dehydrin ERD10 OS=Arabidopsis thaliana GN=ERD10 PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.400e-20 Identity = 96/252 (38.10%), Postives = 132/252 (52.38%), Query Frame = 1
BLAST of Spo10299.1 vs. ExPASy Swiss-Prot
Match: CO410_WHEAT (Dehydrin COR410 OS=Triticum aestivum GN=COR410 PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.700e-18 Identity = 96/254 (37.80%), Postives = 122/254 (48.03%), Query Frame = 1
BLAST of Spo10299.1 vs. ExPASy Swiss-Prot
Match: ERD14_ARATH (Dehydrin ERD14 OS=Arabidopsis thaliana GN=ERD14 PE=1 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 3.600e-16 Identity = 78/175 (44.57%), Postives = 99/175 (56.57%), Query Frame = 1
BLAST of Spo10299.1 vs. TAIR (Arabidopsis)
Match: AT1G20440.1 (cold-regulated 47) HSP 1 Score: 120.2 bits (300), Expect = 1.700e-27 Identity = 106/257 (41.25%), Postives = 141/257 (54.86%), Query Frame = 1
BLAST of Spo10299.1 vs. TAIR (Arabidopsis)
Match: AT1G20450.1 (Dehydrin family protein) HSP 1 Score: 100.5 bits (249), Expect = 1.400e-21 Identity = 96/252 (38.10%), Postives = 132/252 (52.38%), Query Frame = 1
BLAST of Spo10299.1 vs. TAIR (Arabidopsis)
Match: AT1G76180.1 (Dehydrin family protein) HSP 1 Score: 86.7 bits (213), Expect = 2.000e-17 Identity = 78/175 (44.57%), Postives = 99/175 (56.57%), Query Frame = 1
BLAST of Spo10299.1 vs. TAIR (Arabidopsis)
Match: AT4G38410.1 (Dehydrin family protein) HSP 1 Score: 57.4 bits (137), Expect = 1.300e-8 Identity = 70/198 (35.35%), Postives = 101/198 (51.01%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10299.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10299.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10299.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10299.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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