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Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTACTTCGGAGGTGGATCCAGTATGGAAGACGGAAATCGCGAGCAGAACATGGCTTCTGCTGGCGACGCCGGAAACCGTCGCCGGAGAACAAGTGGATACCACAATGATACGGGAGAGTTCTCCGGCGACGGTTGCAGGGATCCCGAGGCGTGGAGTAACTTTGCGGATAGTTATAGCCAGGTGCAGACGGTGTTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAACCACCAGTCGAGGATTCCGGATAACATGGTGAAGAATGTGGCGATCATTCAGGAATTGAACGGAAACATTACGAAAGTCGCTTCGATTTATTCCGATTTGTCGACGAATTTCACCGGGAGGGTGAGGCAGCAACGGCAAGGGAGTGGGGGGAAAGGTGTTGGTAACGGAGGGAGTAGTGGTGGGAGGAGGAATGATGAGTGAATGTCTTACTTCGGAGGTGGATCCAGTATGGAAGACGGAAATCGCGAGCAGAACATGGCTTCTGCTGGCGACGCCGGAAACCGTCGCCGGAGAACAAGTGGATACCACAATGATACGGGAGAGTTCTCCGGCGACGGTTGCAGGGATCCCGAGGCGTGGAGTAACTTTGCGGATAGTTATAGCCAGGTGCAGACGGTGTTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAACCACCAGTCGAGGATTCCGGATAACATGGTGAAGAATGTGGCGATCATTCAGGAATTGAACGGAAACATTACGAAAGTCGCTTCGATTTATTCCGATTTGTCGACGAATTTCACCGGGAGGGTGAGGCAGCAACGGCAAGGGAGTGGGGGGAAAGGTGTTGGTAACGGAGGGAGTAGTGGTGGGAGGAGGAATGATGAGTGA ATGTCTTACTTCGGAGGTGGATCCAGTATGGAAGACGGAAATCGCGAGCAGAACATGGCTTCTGCTGGCGACGCCGGAAACCGTCGCCGGAGAACAAGTGGATACCACAATGATACGGGAGAGTTCTCCGGCGACGGTTGCAGGGATCCCGAGGCGTGGAGTAACTTTGCGGATAGTTATAGCCAGGTGCAGACGGTGTTGGATCGGAACAGGATGTTGATCCAGCAGGCGAACGAGAACCACCAGTCGAGGATTCCGGATAACATGGTGAAGAATGTGGCGATCATTCAGGAATTGAACGGAAACATTACGAAAGTCGCTTCGATTTATTCCGATTTGTCGACGAATTTCACCGGGAGGGTGAGGCAGCAACGGCAAGGGAGTGGGGGGAAAGGTGTTGGTAACGGAGGGAGTAGTGGTGGGAGGAGGAATGATGAGTGA MSYFGGGSSMEDGNREQNMASAGDAGNRRRRTSGYHNDTGEFSGDGCRDPEAWSNFADSYSQVQTVLDRNRMLIQQANENHQSRIPDNMVKNVAIIQELNGNITKVASIYSDLSTNFTGRVRQQRQGSGGKGVGNGGSSGGRRNDE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo10269.1 vs. NCBI nr
Match: gi|902227639|gb|KNA20764.1| (hypothetical protein SOVF_049340 [Spinacia oleracea]) HSP 1 Score: 281.6 bits (719), Expect = 8.000e-73 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Spo10269.1 vs. NCBI nr
Match: gi|902227640|gb|KNA20765.1| (hypothetical protein SOVF_049350 [Spinacia oleracea]) HSP 1 Score: 196.4 bits (498), Expect = 3.400e-47 Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 1
BLAST of Spo10269.1 vs. NCBI nr
Match: gi|731315048|ref|XP_010689700.1| (PREDICTED: protein EARLY FLOWERING 4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 190.3 bits (482), Expect = 2.400e-45 Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of Spo10269.1 vs. NCBI nr
Match: gi|870867338|gb|KMT18207.1| (hypothetical protein BVRB_2g023780 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 177.2 bits (448), Expect = 2.100e-41 Identity = 101/137 (73.72%), Postives = 110/137 (80.29%), Query Frame = 1
BLAST of Spo10269.1 vs. NCBI nr
Match: gi|731315044|ref|XP_010689678.1| (PREDICTED: protein EARLY FLOWERING 4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 177.2 bits (448), Expect = 2.100e-41 Identity = 102/139 (73.38%), Postives = 111/139 (79.86%), Query Frame = 1
BLAST of Spo10269.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPE7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049340 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 5.600e-73 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Spo10269.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049350 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 2.400e-47 Identity = 111/145 (76.55%), Postives = 121/145 (83.45%), Query Frame = 1
BLAST of Spo10269.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1Q2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023800 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 1.700e-45 Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of Spo10269.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CX73_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023780 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.500e-41 Identity = 101/137 (73.72%), Postives = 110/137 (80.29%), Query Frame = 1
BLAST of Spo10269.1 vs. UniProtKB/TrEMBL
Match: Q6UEI6_MESCR (Early flowering 4 OS=Mesembryanthemum crystallinum GN=ELF4 PE=2 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 6.200e-32 Identity = 90/142 (63.38%), Postives = 103/142 (72.54%), Query Frame = 1
BLAST of Spo10269.1 vs. ExPASy Swiss-Prot
Match: ELF4_ARATH (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.700e-19 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 1
BLAST of Spo10269.1 vs. ExPASy Swiss-Prot
Match: EF4L1_ARATH (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.500e-15 Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
BLAST of Spo10269.1 vs. ExPASy Swiss-Prot
Match: EF4L3_ARATH (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 4.500e-15 Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
BLAST of Spo10269.1 vs. ExPASy Swiss-Prot
Match: EF4L4_ARATH (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.800e-11 Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 1
BLAST of Spo10269.1 vs. ExPASy Swiss-Prot
Match: EF4L2_ARATH (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.100e-10 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
BLAST of Spo10269.1 vs. TAIR (Arabidopsis)
Match: AT2G40080.1 (Protein of unknown function (DUF1313)) HSP 1 Score: 97.1 bits (240), Expect = 9.800e-21 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 1
BLAST of Spo10269.1 vs. TAIR (Arabidopsis)
Match: AT2G29950.1 (ELF4-like 1) HSP 1 Score: 84.0 bits (206), Expect = 8.600e-17 Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
BLAST of Spo10269.1 vs. TAIR (Arabidopsis)
Match: AT2G06255.1 (ELF4-like 3) HSP 1 Score: 82.4 bits (202), Expect = 2.500e-16 Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
BLAST of Spo10269.1 vs. TAIR (Arabidopsis)
Match: AT1G17455.1 (ELF4-like 4) HSP 1 Score: 70.5 bits (171), Expect = 9.900e-13 Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 1
BLAST of Spo10269.1 vs. TAIR (Arabidopsis)
Match: AT1G72630.1 (ELF4-like 2) HSP 1 Score: 67.8 bits (164), Expect = 6.400e-12 Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10269.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10269.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10269.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10269.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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