Spo10238 (gene)

Overview
NameSpo10238
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSignal transducer and transcription activator isoform 1
Locationchr3 : 16100259 .. 16102018 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCCTTCCCCTCTTTCTTCTCACAAACACACACAAAAAGAAGAGAGAAAAAAAACCAGAGGAGAGAGAGAGAAGAAGAATTTGTTTTTTGAAAAAACAATGGCCGCCTATATTTCAGAATCTGATTCCCAAGAAAAACAATTAATCACCACCCAAACAACCCCTACCTCCGAACAACAACGATATGAAGAAGAAGAGGTGATTGTTTATAAGCCAAAGCCCAAAACCAGGAAACCCAAAAAGAGGGTCCCACAAGTATGTTTAGAAGGGTATGTAGAAGACGATGATTTGCCCAGAACAAAGAGCTTAACGGATGATGATCTTGATGAGTTAAAGGGTTGTTTGGATTTAGGGTTTGGGTTTAGTTATGATGAAATCCCTGAACTTTGTAATACTTTGCCTGCTTTGGAGCTTTGTTATTCTATGTCTCAGAAGTTTCTAGATGACCATCCTAATCAACAACATCACCTCCACCAGGGAGGTGGTTCCGGTGGTGTTTCTTCTGATACGGCTTCGTTTTCCGGTTCCGAAAGTTCCAGTCCCATGCCTACCTGGAAGATCTCTAGTCCTGGTGAGTTGATTTTATTTTTTTTGTAATTTTGTTGATCTGGGTTTGATTTTATCTTTGTTTTATGATCTGGTCTTGATTTGGATTTTCTTGGTTTTTGGTGATCTGGTTTATAATTTGATTAATTCATTAGAGAATTGTTTTGCTTTGGTTTAGAACTAATAGCTGTAGATTAAATCCATGGTATAATTTTAACTAGTAATGTGAAGATAAATTGGACGGAGGTAGTATTGACGGATTCAAGATCGATTTTGATCAATTTTAGGACAAATGATCACTTAATGATGAGCCTATATATTTGTGTGTTTATGTTCAGAATCACTGTAATTTGGGTTAGATTATTAATTTGGAGTAGATCTGATTGATTCTGTGGCAAATTTTTAATTAAAATAGGTTGAGCTAATCGAGGGGAACTTTAGATTATTCGAATTCAAGATGTTCCATGATCTGTGCTGACAAATTTGTTACAAGAACGAAAGACTTGATTGTATGCACATGTTATCTGCAGACTAAGTAGAAACCAATCAATAATCATTTCACATTGTTATTGCTGTGTATTGGATTTTGTGATTTTTTCAGCTGTTAATAGTTGGCGTTTGTTAGGCATGAGTTGGCAAAATTGCAAATTAATTGACCTAATTATGTAGTTTTCATATCTATTCTTTGCTCACATTGTGCTGTGCCTTACCTTGTTTGCTTTCCTTTGTTTAGGTGACCATCCTGAAGATGTCAAAGCGAGGCTTAAGTTTTGGGCTCAGACCGTGGCTTGTACTGTCAAGTTATGCAGCTAGATTGCAATGGCGTCGACTGATTTGATCAGTCAAGGATGAAGGATGTCTTATTTTCCCTAAAAGATGAATATTCTCAACTTTCGTGATCAAAATGGATCTTTGAATGGGAAGATGAGCATGCCAGGACCGCCAAACTTTAGAACTTTGCGACTGAATTTTTGAACAAGATGGATTCAGAACCATTTGAGAAGAGGGCCGTGTCAGGTCTGAGATGATTCAACTAACCGATGATGGTCTGACATTTAGTCTTCAACTTAGATGTTAGCCTGTGAATTATTTGTAATGATAGATGAAATAAAAGAGATGGAAATTGAATAAAACTAGCTTCATTAATCACTATTTTGGTCTATTTGCAACTGTTGTTCTGCTGTTATATTTCTATCTGCTTATTCTACTGCGA

mRNA sequence

TTCGCCTTCCCCTCTTTCTTCTCACAAACACACACAAAAAGAAGAGAGAAAAAAAACCAGAGGAGAGAGAGAGAAGAAGAATTTGTTTTTTGAAAAAACAATGGCCGCCTATATTTCAGAATCTGATTCCCAAGAAAAACAATTAATCACCACCCAAACAACCCCTACCTCCGAACAACAACGATATGAAGAAGAAGAGGTGATTGTTTATAAGCCAAAGCCCAAAACCAGGAAACCCAAAAAGAGGGTCCCACAAGTATGTTTAGAAGGGTATGTAGAAGACGATGATTTGCCCAGAACAAAGAGCTTAACGGATGATGATCTTGATGAGTTAAAGGGTTGTTTGGATTTAGGGTTTGGGTTTAGTTATGATGAAATCCCTGAACTTTGTAATACTTTGCCTGCTTTGGAGCTTTGTTATTCTATGTCTCAGAAGTTTCTAGATGACCATCCTAATCAACAACATCACCTCCACCAGGGAGGTGGTTCCGGTGGTGTTTCTTCTGATACGGCTTCGTTTTCCGGTTCCGAAAGTTCCAGTCCCATGCCTACCTGGAAGATCTCTAGTCCTGGTGACCATCCTGAAGATGTCAAAGCGAGGCTTAAGTTTTGGGCTCAGACCGTGGCTTGTACTGTCAAGTTATGCAGCTAGATTGCAATGGCGTCGACTGATTTGATCAGTCAAGGATGAAGGATGTCTTATTTTCCCTAAAAGATGAATATTCTCAACTTTCGTGATCAAAATGGATCTTTGAATGGGAAGATGAGCATGCCAGGACCGCCAAACTTTAGAACTTTGCGACTGAATTTTTGAACAAGATGGATTCAGAACCATTTGAGAAGAGGGCCGTGTCAGGTCTGAGATGATTCAACTAACCGATGATGGTCTGACATTTAGTCTTCAACTTAGATGTTAGCCTGTGAATTATTTGTAATGATAGATGAAATAAAAGAGATGGAAATTGAATAAAACTAGCTTCATTAATCACTATTTTGGTCTATTTGCAACTGTTGTTCTGCTGTTATATTTCTATCTGCTTATTCTACTGCGA

Coding sequence (CDS)

ATGGCCGCCTATATTTCAGAATCTGATTCCCAAGAAAAACAATTAATCACCACCCAAACAACCCCTACCTCCGAACAACAACGATATGAAGAAGAAGAGGTGATTGTTTATAAGCCAAAGCCCAAAACCAGGAAACCCAAAAAGAGGGTCCCACAAGTATGTTTAGAAGGGTATGTAGAAGACGATGATTTGCCCAGAACAAAGAGCTTAACGGATGATGATCTTGATGAGTTAAAGGGTTGTTTGGATTTAGGGTTTGGGTTTAGTTATGATGAAATCCCTGAACTTTGTAATACTTTGCCTGCTTTGGAGCTTTGTTATTCTATGTCTCAGAAGTTTCTAGATGACCATCCTAATCAACAACATCACCTCCACCAGGGAGGTGGTTCCGGTGGTGTTTCTTCTGATACGGCTTCGTTTTCCGGTTCCGAAAGTTCCAGTCCCATGCCTACCTGGAAGATCTCTAGTCCTGGTGACCATCCTGAAGATGTCAAAGCGAGGCTTAAGTTTTGGGCTCAGACCGTGGCTTGTACTGTCAAGTTATGCAGCTAG

Protein sequence

MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVEDDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10238.1Spo10238.1mRNA


Homology
[Close]
BLAST of Spo10238.1 vs. NCBI nr
Match: gi|902149881|gb|KNA05349.1| (hypothetical protein SOVF_191210 [Spinacia oleracea])

HSP 1 Score: 370.2 bits (949), Expect = 2.100e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

		  

Query: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60
           MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE
Sbjct: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60

Query: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120
           DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ
Sbjct: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120

Query: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180
           QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK
Sbjct: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180

Query: 181 LCS 184
           LCS
Sbjct: 181 LCS 183
[Close]
BLAST of Spo10238.1 vs. NCBI nr
Match: gi|731322300|ref|XP_010671814.1| (PREDICTED: uncharacterized protein LOC104888508 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 271.2 bits (692), Expect = 1.400e-69
Identity = 145/194 (74.74%), Postives = 157/194 (80.93%), Query Frame = 1 

		  

Query: 1   MAAYISESDSQEKQLITT----------QTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRV 60
           MAAY  +SDSQ+ + I            Q     +QQ  EEEEVIV++PKP+ RKPKKRV
Sbjct: 1   MAAYNLQSDSQDSREILIEQQQLEQQQHQQQKIEKQQEEEEEEVIVWQPKPRNRKPKKRV 60

Query: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMS 120
           PQVCLEGYVEDDDLPRTKSLTDDDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSMS
Sbjct: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMS 120

Query: 121 QKFLDDHPNQQHHLHQGGGSGGVSSDTASFS-GSESSSPMPTWKISSPGDHPEDVKARLK 180
           QKFLDDHPNQ +       S  ++SDTAS S GSE+SSPMPTWKISSPGDHPEDVKARLK
Sbjct: 121 QKFLDDHPNQLNPK-----SLSIASDTASSSSGSETSSPMPTWKISSPGDHPEDVKARLK 180

Query: 181 FWAQTVACTVKLCS 184
           FWAQ VACTVKLCS
Sbjct: 181 FWAQAVACTVKLCS 189
[Close]
BLAST of Spo10238.1 vs. NCBI nr
Match: gi|743883588|ref|XP_011037064.1| (PREDICTED: uncharacterized protein LOC105134374 [Populus euphratica])

HSP 1 Score: 193.0 bits (489), Expect = 4.700e-46
Identity = 100/145 (68.97%), Postives = 111/145 (76.55%), Query Frame = 1 

		  

Query: 44  RKPKKRVPQVCLEGYVE-----DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCN 103
           RK +++  QV LEGYVE     +D+L RTKSLTDDDLDELKGCLDLGFGFSYDEIPELCN
Sbjct: 70  RKIQRKKSQVLLEGYVEGSSNSEDELKRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCN 129

Query: 104 TLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPG 163
           TLPALELCYSMSQKFLD+H       H+        ++ A      SSSP+  WKISSPG
Sbjct: 130 TLPALELCYSMSQKFLDEHQKP----HESSSPAEAEAEAA------SSSPIANWKISSPG 189

Query: 164 DHPEDVKARLKFWAQTVACTVKLCS 184
           DHPEDVKARLKFWAQTVACTV+LCS
Sbjct: 190 DHPEDVKARLKFWAQTVACTVRLCS 204
[Close]
BLAST of Spo10238.1 vs. NCBI nr
Match: gi|567901172|ref|XP_006443074.1| (hypothetical protein CICLE_v10022453mg [Citrus clementina])

HSP 1 Score: 193.0 bits (489), Expect = 4.700e-46
Identity = 108/177 (61.02%), Postives = 127/177 (71.75%), Query Frame = 1 

		  

Query: 10  SQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE---DDDLPR 69
           +QE Q +T   +   E+   E EE++      K    KK+  QV LEGYVE   +DDL R
Sbjct: 27  NQEPQFLTITRSGFDEE---ESEELL------KNENKKKKKNQVLLEGYVETDSEDDLKR 86

Query: 70  TKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQ 129
           TKSLTD+DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKF+D+H +Q+    +
Sbjct: 87  TKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKS--PE 146

Query: 130 GGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
             G+  VS+D         SSP+  WKISSPGDHPEDVKARLK+WAQ VACTV+LCS
Sbjct: 147 SHGNSPVSTDPV-------SSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 185
[Close]
BLAST of Spo10238.1 vs. NCBI nr
Match: gi|566211702|ref|XP_006372903.1| (hypothetical protein POPTR_0017s06130g [Populus trichocarpa])

HSP 1 Score: 191.4 bits (485), Expect = 1.400e-45
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 1 

		  

Query: 40  KPKTRKPKKRVPQVCLEGYVE-----DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIP 99
           K   RK  ++  QV LEGYVE     +D+L RTKSLTDDDLDELKGCLDLGFGFSYDEIP
Sbjct: 66  KGSLRKILRKKSQVLLEGYVEGRSNSEDELKRTKSLTDDDLDELKGCLDLGFGFSYDEIP 125

Query: 100 ELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKI 159
           ELCNTLPALELCYSMSQKFLD+H                SS   + + + SSSP+  WKI
Sbjct: 126 ELCNTLPALELCYSMSQKFLDEHQKPPES----------SSPAEAEAEAASSSPIANWKI 185

Query: 160 SSPGDHPEDVKARLKFWAQTVACTVKLCS 184
           SSPGDHPEDVKARLKFWAQTVACTV+LCS
Sbjct: 186 SSPGDHPEDVKARLKFWAQTVACTVRLCS 204
[Close]
BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_191210 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.500e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

		  

Query: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60
           MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE
Sbjct: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60

Query: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120
           DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ
Sbjct: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120

Query: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180
           QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK
Sbjct: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180

Query: 181 LCS 184
           LCS
Sbjct: 181 LCS 183
[Close]
BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054830 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 9.400e-70
Identity = 145/194 (74.74%), Postives = 157/194 (80.93%), Query Frame = 1 

		  

Query: 1   MAAYISESDSQEKQLITT----------QTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRV 60
           MAAY  +SDSQ+ + I            Q     +QQ  EEEEVIV++PKP+ RKPKKRV
Sbjct: 1   MAAYNLQSDSQDSREILIEQQQLEQQQHQQQKIEKQQEEEEEEVIVWQPKPRNRKPKKRV 60

Query: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMS 120
           PQVCLEGYVEDDDLPRTKSLTDDDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSMS
Sbjct: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMS 120

Query: 121 QKFLDDHPNQQHHLHQGGGSGGVSSDTASFS-GSESSSPMPTWKISSPGDHPEDVKARLK 180
           QKFLDDHPNQ +       S  ++SDTAS S GSE+SSPMPTWKISSPGDHPEDVKARLK
Sbjct: 121 QKFLDDHPNQLNPK-----SLSIASDTASSSSGSETSSPMPTWKISSPGDHPEDVKARLK 180

Query: 181 FWAQTVACTVKLCS 184
           FWAQ VACTVKLCS
Sbjct: 181 FWAQAVACTVKLCS 189
[Close]
BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: A0A067DKT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.300e-46
Identity = 108/177 (61.02%), Postives = 127/177 (71.75%), Query Frame = 1 

		  

Query: 10  SQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE---DDDLPR 69
           +QE Q +T   +   E+   E EE++      K    KK+  QV LEGYVE   +DDL R
Sbjct: 27  NQEPQFLTITRSGFDEE---ESEELL------KNENKKKKKNQVLLEGYVETDSEDDLKR 86

Query: 70  TKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQ 129
           TKSLTD+DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKF+D+H +Q+    +
Sbjct: 87  TKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKS--PE 146

Query: 130 GGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
             G+  VS+D         SSP+  WKISSPGDHPEDVKARLK+WAQ VACTV+LCS
Sbjct: 147 SHGNSPVSTDPV-------SSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 185
[Close]
BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: V4VT44_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022453mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.300e-46
Identity = 108/177 (61.02%), Postives = 127/177 (71.75%), Query Frame = 1 

		  

Query: 10  SQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE---DDDLPR 69
           +QE Q +T   +   E+   E EE++      K    KK+  QV LEGYVE   +DDL R
Sbjct: 27  NQEPQFLTITRSGFDEE---ESEELL------KNENKKKKKNQVLLEGYVETDSEDDLKR 86

Query: 70  TKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQ 129
           TKSLTD+DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKF+D+H +Q+    +
Sbjct: 87  TKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKS--PE 146

Query: 130 GGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
             G+  VS+D         SSP+  WKISSPGDHPEDVKARLK+WAQ VACTV+LCS
Sbjct: 147 SHGNSPVSTDPV-------SSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 185
[Close]
BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: U5FIB1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06130g PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.500e-46
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 1 

		  

Query: 40  KPKTRKPKKRVPQVCLEGYVE-----DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIP 99
           K   RK  ++  QV LEGYVE     +D+L RTKSLTDDDLDELKGCLDLGFGFSYDEIP
Sbjct: 66  KGSLRKILRKKSQVLLEGYVEGRSNSEDELKRTKSLTDDDLDELKGCLDLGFGFSYDEIP 125

Query: 100 ELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKI 159
           ELCNTLPALELCYSMSQKFLD+H                SS   + + + SSSP+  WKI
Sbjct: 126 ELCNTLPALELCYSMSQKFLDEHQKPPES----------SSPAEAEAEAASSSPIANWKI 185

Query: 160 SSPGDHPEDVKARLKFWAQTVACTVKLCS 184
           SSPGDHPEDVKARLKFWAQTVACTV+LCS
Sbjct: 186 SSPGDHPEDVKARLKFWAQTVACTVRLCS 204
[Close]
BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT2G31560.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 181.8 bits (460), Expect = 3.800e-46
Identity = 95/142 (66.90%), Postives = 107/142 (75.35%), Query Frame = 1 

		  

Query: 44  RKPKKRVPQVCLEGYVED--DDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLP 103
           +K +K+  QV LEGY  D  DDL R KSLTDDDL+ELKGCLDLGFGFSYDEIPELCNTLP
Sbjct: 70  KKLEKKKSQVLLEGYALDDQDDLTRAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNTLP 129

Query: 104 ALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHP 163
           ALELCYSMSQKFLDD   Q HH  Q         +  S     +++P+  WKISSPGD P
Sbjct: 130 ALELCYSMSQKFLDD-KQQNHHKSQ--------EEDDSSPPPTTTAPIANWKISSPGDDP 189

Query: 164 EDVKARLKFWAQTVACTVKLCS 184
           +DVKARLK+WAQTVACTV+LCS
Sbjct: 190 DDVKARLKYWAQTVACTVRLCS 202
[Close]
BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT2G43340.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 178.3 bits (451), Expect = 4.200e-45
Identity = 102/185 (55.14%), Postives = 125/185 (67.57%), Query Frame = 1 

		  

Query: 7   ESDSQEKQLITTQTTPTSEQQRYEEEEVI----VYKPKPKTRKPKKRVPQVCLEGYVE-- 66
           E+D      I+T +  +      EEEE+     V + K +T+K +K+   V LEGYV   
Sbjct: 14  EADVDSDSEISTSSFSSCSYSESEEEEINNGFGVVQSKKQTKKLEKKKSNVLLEGYVVDS 73

Query: 67  --DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHP 126
             +DDL RTKSLTDDDL+ELKGC+DLGFGF+Y+EIPELCNTLPALELCYSMSQKF+D   
Sbjct: 74  AVNDDLKRTKSLTDDDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSMSQKFID--- 133

Query: 127 NQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACT 184
            Q HH H        S +  S       SP+ +WKISSPGD+P+DVKARLKFWAQ VACT
Sbjct: 134 -QDHHHHSSS-----SPEKKSSVLDSPVSPIASWKISSPGDNPDDVKARLKFWAQAVACT 189
[Close]
BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT1G05870.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-43
Identity = 92/155 (59.35%), Postives = 110/155 (70.97%), Query Frame = 1 

		  

Query: 44  RKPKKRVPQVCLEGYVE----------DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEI 103
           +K +++  QV LEGYVE           DDL R+KSLTDDDL++L+GCLDLGFGFSYDEI
Sbjct: 48  KKLERKKSQVLLEGYVETASSSSVDDQKDDLTRSKSLTDDDLEDLRGCLDLGFGFSYDEI 107

Query: 104 PELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSES-----SSP 163
           PELCNTLPALELCYSMSQKFLDD  N+             S +T+S     S     ++P
Sbjct: 108 PELCNTLPALELCYSMSQKFLDDKQNK-------------SPETSSVEDCPSPPLVTATP 167

Query: 164 MPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
           +  WKISSPGD+P+DVKARLK+WAQ VACTV+LCS
Sbjct: 168 IANWKISSPGDNPDDVKARLKYWAQAVACTVQLCS 189
[Close]
BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 99.4 bits (246), Expect = 2.500e-21
Identity = 57/104 (54.81%), Postives = 63/104 (60.58%), Query Frame = 1 

		  

Query: 70  LTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGG 129
           LTDDDL+ LKGCLDLGFGF+YDEIP LC TLPALELCYSMSQK LDD             
Sbjct: 843 LTDDDLEVLKGCLDLGFGFNYDEIPALCKTLPALELCYSMSQKNLDD------------- 902

Query: 130 SGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQ 174
                  T S       S +P+       D+P+DVKARLK WAQ
Sbjct: 903 -----KHTPSLQLPIGRSLVPSC------DNPDDVKARLKCWAQ 922
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BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT5G28690.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-17
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 1 

		  

Query: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120
           D+D P    LTD+DL ELKG ++LGFGFS +   +LCNTLPAL+L ++++++ L   P+ 
Sbjct: 75  DNDSP---DLTDEDLRELKGSIELGFGFSEEAGQKLCNTLPALDLYFAVNRQ-LSPLPSP 134

Query: 121 QHHLHQGGGSGGVSSDTASFSGSESS--SPMPTWKISSPGDHPEDVKARLKFWAQTVACT 180
                  GG G +SS + S S    S  +   + KI  PGD+P+ VK RL+ WAQ VAC+
Sbjct: 135 S---SSNGGDGSLSSTSVSSSSIPCSPKTDSDSLKILCPGDNPQQVKQRLRHWAQAVACS 188
The following BLAST results are available for this feature:
BLAST of Spo10238.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902149881|gb|KNA05349.1|2.1e-99100.hypothetical protein SOVF_1912... [more]
gi|731322300|ref|XP_010671814.1|1.4e-6974.7PREDICTED: uncharacterized pro... [more]
gi|743883588|ref|XP_011037064.1|4.7e-4668.9PREDICTED: uncharacterized pro... [more]
gi|567901172|ref|XP_006443074.1|4.7e-4661.0hypothetical protein CICLE_v10... [more]
gi|566211702|ref|XP_006372903.1|1.4e-4567.7hypothetical protein POPTR_001... [more]
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BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QDJ8_SPIOL1.5e-99100.Uncharacterized protein OS=Spi... [more]
A0A0J8CRB7_BETVU9.4e-7074.7Uncharacterized protein OS=Bet... [more]
A0A067DKT5_CITSI3.3e-4661.0Uncharacterized protein OS=Cit... [more]
V4VT44_9ROSI3.3e-4661.0Uncharacterized protein OS=Cit... [more]
U5FIB1_POPTR9.5e-4667.7Uncharacterized protein OS=Pop... [more]
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BLAST of Spo10238.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G31560.13.8e-4666.9Protein of unknown function (D... [more]
AT2G43340.14.2e-4555.1Protein of unknown function (D... [more]
AT1G05870.11.8e-4359.3Protein of unknown function (D... [more]
AT3G22690.12.5e-2154.8Protein of unknown function DU... [more]
AT5G28690.12.2e-1743.8Protein of unknown function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012881Protein of unknown function DUF1685PFAMPF07939DUF1685coord: 70..122
score: 8.4
NoneNo IPR availablePANTHERPTHR31865FAMILY NOT NAMEDcoord: 62..183
score: 1.1
NoneNo IPR availablePANTHERPTHR31865:SF0SUBFAMILY NOT NAMEDcoord: 62..183
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006096 glycolytic process
biological_process GO:0006417 regulation of translation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008152 metabolic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0006396 RNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0071805 potassium ion transmembrane transport
biological_process GO:0042793 plastid transcription
biological_process GO:0010207 photosystem II assembly
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009902 chloroplast relocation
biological_process GO:0030154 cell differentiation
biological_process GO:0006810 transport
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009414 response to water deprivation
biological_process GO:0009821 alkaloid biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006535 cysteine biosynthetic process from serine
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006103 2-oxoglutarate metabolic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0015979 photosynthesis
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:1901918 negative regulation of exoribonuclease activity
biological_process GO:0009409 response to cold
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0018874 benzoate metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009788 negative regulation of abscisic acid-activated signaling pathway
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0006574 valine catabolic process
biological_process GO:0046251 limonene catabolic process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0006598 polyamine catabolic process
biological_process GO:0009658 chloroplast organization
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005777 peroxisome
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0000785 chromatin
cellular_component GO:0009507 chloroplast
cellular_component GO:0005886 plasma membrane
molecular_function GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0004300 enoyl-CoA hydratase activity
molecular_function GO:0046592 polyamine oxidase activity
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0016853 isomerase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0015297 antiporter activity
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0080048 GDP-D-glucose phosphorylase activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005267 potassium channel activity
molecular_function GO:0009001 serine O-acetyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo010930.80Barchart | Table
Spo132600.79Barchart | Table
Spo048970.78Barchart | Table
Spo214840.77Barchart | Table
Spo213820.75Barchart | Table
Spo143460.75Barchart | Table
Spo148520.75Barchart | Table
Spo083370.75Barchart | Table
Spo011480.74Barchart | Table
Spo248470.74Barchart | Table
Spo149480.74Barchart | Table
Spo113980.74Barchart | Table
Spo114410.73Barchart | Table
Spo173450.73Barchart | Table
Spo011350.73Barchart | Table
Spo020440.72Barchart | Table
Spo047540.72Barchart | Table
Spo112010.72Barchart | Table
Spo198120.72Barchart | Table
Spo094120.71Barchart | Table
Spo073010.71Barchart | Table
Spo131140.71Barchart | Table
Spo005290.71Barchart | Table
Spo081660.70Barchart | Table
Spo159900.70Barchart | Table
Spo020170.70Barchart | Table
Spo256480.70Barchart | Table
Spo251700.70Barchart | Table
Spo043910.70Barchart | Table
Spo246770.70Barchart | Table
Spo281460.70Barchart | Table
Spo232320.70Barchart | Table
Spo003140.70Barchart | Table
Spo229210.70Barchart | Table
Spo096630.70Barchart | Table
Spo116350.70Barchart | Table
Spo206020.70Barchart | Table
Spo144730.70Barchart | Table
Spo055080.69Barchart | Table
Spo212080.69Barchart | Table
Spo273240.69Barchart | Table
Spo137000.69Barchart | Table
Spo060120.69Barchart | Table
Spo106770.69Barchart | Table
Spo216720.69Barchart | Table
Spo028330.68Barchart | Table
Spo105870.68Barchart | Table
Spo211940.68Barchart | Table
Spo071090.68Barchart | Table
Spo212470.68Barchart | Table
Spo172030.68Barchart | Table
Spo116420.68Barchart | Table
Spo081680.68Barchart | Table
Spo049540.68Barchart | Table
Spo072370.67Barchart | Table
Spo048810.67Barchart | Table
Spo000500.67Barchart | Table
Spo113970.67Barchart | Table
Spo115010.67Barchart | Table
Spo145580.67Barchart | Table
Spo152930.67Barchart | Table
Spo154230.67Barchart | Table
Spo182380.67Barchart | Table
Spo194230.67Barchart | Table
Spo208950.67Barchart | Table
Spo222720.67Barchart | Table
Spo230780.67Barchart | Table
Spo268180.67Barchart | Table
Spo188440.66Barchart | Table
Spo257660.66Barchart | Table
Spo157070.66Barchart | Table
Spo123860.66Barchart | Table
Spo119410.66Barchart | Table
Spo114160.66Barchart | Table
Spo213630.66Barchart | Table
Spo102190.66Barchart | Table
Spo001350.66Barchart | Table
Spo224790.66Barchart | Table
Spo075790.66Barchart | Table
Spo046150.66Barchart | Table
Spo171320.66Barchart | Table
Spo159490.66Barchart | Table
Spo182310.66Barchart | Table
Spo189290.66Barchart | Table
Spo133330.66Barchart | Table
Spo205180.65Barchart | Table
Spo178600.65Barchart | Table
Spo259530.65Barchart | Table
Spo016930.65Barchart | Table
Spo067190.65Barchart | Table
Spo233100.65Barchart | Table
Spo233110.65Barchart | Table
Spo105350.65Barchart | Table
Spo103730.65Barchart | Table
Spo216260.65Barchart | Table
Spo020670.65Barchart | Table
Spo036500.65Barchart | Table
Spo028250.65Barchart | Table