Spo10133 (gene)

Overview
NameSpo10133
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionAlba DNA/RNA-binding protein
LocationSpoScf_01452 : 20096 .. 24344 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCTTGGTGGCCGAGCACAAATCATGTTTCTAGTTTTAGAGGAGAGAGAAAATAAGAAAGAAAGAGTCAAGGGTTTACGGTTTGTGTACCAGTTTAACAACAACAACAACAACAACAACCTACCAGTCACCCTGAAACCCCAGTTTTCCTGAAGAAGAAAAAAAACAAGCGAAAATGGAGCAGGTTGCAGAGGCCGTTAGCAATCTCACCATCACAGATTCACCCAACAACAATGAAAATAACAACAACAATGAGAACAACAACAACAACAACCACAACAACAGCAGCAGCAATTTCAACAACAACAAGAAAAACCGTATTCAAGTTTCCAACACTAAAAAACCCCTTTTTTTCTACGTGAATCTTGCCAAGGTAATTATTTTCGTATTTTGATGGGGTTTTCTTATTGTTTTTGATGAAATCTTATCTGGGTTTTTATTTAATTTTTAGTATTATTTTGTTAATTGGTTGCAAATGGGACTAATTTGCTCGTTTTTATTTTAATTTTTGAAAATGTTGGTGTGTATGTAATTATTGATGATACCCAGATAAGGAAATGCGGTATACATTGGCAGGACGTGTTACTGGGTATAACTATGATAAATTTGTCAGGATTTTTGTATTATAGGTGGGAACAATGTTGTGTGAAATGAATTTGGAGTTTCCTGTCATTGATGATTAGGAGTAGTCATTAATCAGGGTGGAATAGGTTTAATTTGGAATCTGGTTATTGCGATAGAGCTGATTTACACTGATTCAAAGGTAGACGACAAAATCAGGATGGGTTAGTGATATTTCAAAAATTTATGCATTATGTAGTGGTTATGATTTAAAAAATTTAGTGCTGGGTTCGCTAATTTTGCTGCTCTGAGTACTCGTATGGTACTCGAGCTTCGTGGGTGCATTCTTTAGTTTTGTGTCTAGTTAAATATGTGATGTGGGTTTATAGATGTAACTAAAATTACCAATGAACTGCATTTGTTAACCTGTGCTATGATATCTTAATGGCTGTGGAATTAATGTGGACGATATTATTTTTGTAGAGATACATGCAACAGCACACAGAGGTGGAGCTCTCTGCTCTTGGAATGGGTATGTCTCTTATTTGTTTGATCTATTCCATAATATGCTTTCTTGTTCTGCTTTATTTTGTAGAAAAAATTGAAAGAAAGATGATGAGGGTCATATGTGGTCCTCTCTTTTTATTTGTTCTTGTAATGTTTTAAAGGTTTAGCCTTTTTATGCTGGTGGCTTGTGTTTAACCTGAGAGCCGGGATTTCTTGGCAAAATAAAATGGTTACTCGTTTAAACCTTAATTTTTTCAGTTTTAATAAACGGCTGATAAGCTCAAGGTTTAACAGCTGCACTTAGGCTCCGTTTGGTAGAGCGTAAAACGTTTTTAATGTAAAATGATTTTCCATGGAAAACATTTTTCAAGGGAAAACACAACTCCAAACTAGTTTTCCTTTGTTTGGTACCTTAAAGGAAAATTGGAGAAGATGGTGAAGATTGAAGGGAAAAAAAGGAGAGGGAGTTAAGGAGGAAAGAAGGAAAAGTGGTTTCTCTCCATCTCAAATGGATGTGGAAAAGGGTTTTCCACATTTGAGGGAGTCATGGAAAATTGTTTTCCATCCCTTGCCCAACCAATCAAAGTAAAATGATTGAAAAGGGGAAAATCGTTTTCCATGAAAACGTTTTACGCCCTACCAAACGGAGCCTTATAGTTAGACTGTTTGCTTCAGCACAGCTACCAAGGCCAATCTAGTGTATCCAAAGTAGAATATATTGAAGGTTCTTCTGATTAGTTCAGCTACTTAGCTAGATTGTTTGGTAACATACATTTAAGTGACAGGTATACAGACATGGAAATACGGGTAACTGAAGATACAGGACAAATATACAGATATAGGCAATGTATTTTTAAATCTAGGTAAATAAAAAAATATTGTAGAAATTTGGGTAACTCTTTTCCTCTCAAATTTTGTATGCGCCCAATATGTTTTGTGTATTAACTTTTTGCAAACATGCAAGAGTGTAATTAATGAGTTAACCTGAACCTATGGTATGTTAACATAGTGGAAAAGGAAGTTATACAGATGAATATGCATTTATTAACCGTAGAGGCCAATGTTTTGATACAACCATGAAAAGGTGGATGAATCAAAGAAAGTTAGATTAGATAGTTTACTTAGTTATCAGTTAAAGGAATAATAATGTACACGCACTTGCACAAAATCATCTATACGGGGTTGAGATGTGCAGAACTCCAATATGTGTCAGATTACGATCACGTCTCCTAAAAGTCTGTGCAACATAGTTATATCAGTTCTTTTTGGTTGGCTATTTCTTGCTTCTTATGGTATTTGTTTGACCCCTTTGCAAACTAGCATGATACTCATGTTAGCCTTTTTGTGTATTGACTTTCCACACTCTCCTAACTATTTTAATAGTTTGTCTTTTGGGAAAGGGTTGTGTTGGTTAAGCCGTTAAGGCGTGAGTACAATGAAGCCAATATGTGCCAGTGTTAGAGCTTGTATTAGGAAATACTGAAATTTCAAAGGCTTTGCTAATATGTTGAAAACTTGTGTGAGTTTACAGAAAAAGGTGACTGAAATCGTGAAATTTAGGTTTGCCCACGAGTAAACATCTGGTCTTGGTGCACTTGGGAGTTTGTGGTTATTAGTTTTCTCCTGCAATTGTTGGAGCCAAATACCATTACCATAATACTTTTGAAGTTTTGATTTACCTGCAATTGCGGTATTCAGATACCATTATCATAATACTTTTTAAGTGAAACATATTCAAAATGAGCTGCAGGCCTTTTATTTGCCTTGGTTCGCTTGGTGCATAATTACGTATTATAAATGAAGCCTAATTGATTCCTAGTGGGTACATGCTGTCAGTCCATTTGCACTTCAAATATTTTACTAACTCTGTACCCTGTGGGCTTGGTTCTGTATAAAACCTTTGTACCAATAGCCTGTTATTCCTCTGAATGATCTAATTCTAACGATTTAGTGCTTGTTTTCTTAGATCAGGGAAGTATTTCTTCCCAAAAAGTTACCAAGTACACTCATGGCCAATTAGTTTCACTTGCTAAGAATTCAATTTATATGTCAACCAAACAACTGCTTACTTGCTTGATGTTCTGTGCAGCCATCGCAACAGTTGTCACAATTGCTGAGATTTTGAAGAACAACGGATTTGCTGTTGAGAAGAGTTAGTAACTTATTTCCTTTTCACTTGTCTCACTCTTGCACTCAGTTGTTAATGTTGTTTGGGATCTTCTTCTCGGTATGTATTGTAAATTATGGTCAAATATTGATACTACGCTATTTATCTTTGATAGAAATAACCACTTCAACAGTCGACATCAATGAATCAGGTGGGAGGCCTGTCCAGAAAGCTAAGGTATTTAGCCAACACAGCTGTTATTTTGTACATTTGTTCCTTGTGTTGTAGGAAATAACACAATTGTTAGTGGAAGATGTCCATTTCCTGAGGAAAATGAAGTACTCTGAATGAAATTGTCTAGATTTAGTTGCCACATTGGCCTAAATAGGCATATTAGAAAACCAGTTACTGGAAGAGGGATTATTATTATTCAGTTGTGTTGATTCTATTTTTATATTCTCGTGTAGATCGAGATTGTACTGGAGAAGTCAGAGAAATTCGATGAGCTGATGGCCGCTGCTGCAGCAGAGGCTGCTGAAGAAGAGGAGCAGGCGTAGGATGTCCAAGCTCTACAGTTTTATCTATCAGACTATCAGTCTCTATTGTGTGTTTGCTGCTGGGTTGTCTTGATTTCTGCCAAGTAAATTGTACTAACAGATTTAGCTACAAAGGCTTTCCCTATCAATTTTGTAACACAAGGAAACAAATCTTGTACTGGCTTCTCACACTGCAAATTGTCATTTATTATTTATGTTATGCTTATAGGATTTTTGATTGTCGCATTCACTTTAATTACTATCAAGTACTGGTAAAAGTTCGTCGATAGTTATGGCTTGCAAAGATCGTCACTCTTAGAGAACTTGATTGTATTTGTTGTTAATCCAATATGCAGGGTAATGTAATTCATACTTCTGCAATAATTGAGAACACAGGTTCACGCGTTCACCTACAGCGCTGCAACTTTGAACAATAGCGACACACGAATTCCTAACGCCCAATTTCTGTCCTTTTAGCCCACGATGCACACTACACAAACATAGCTCACCAAATCAAAAACAGTGGCTCAATAAAAAC

mRNA sequence

AGGCTTGGTGGCCGAGCACAAATCATGTTTCTAGTTTTAGAGGAGAGAGAAAATAAGAAAGAAAGAGTCAAGGGTTTACGGTTTGTGTACCAGTTTAACAACAACAACAACAACAACAACCTACCAGTCACCCTGAAACCCCAGTTTTCCTGAAGAAGAAAAAAAACAAGCGAAAATGGAGCAGGTTGCAGAGGCCGTTAGCAATCTCACCATCACAGATTCACCCAACAACAATGAAAATAACAACAACAATGAGAACAACAACAACAACAACCACAACAACAGCAGCAGCAATTTCAACAACAACAAGAAAAACCGTATTCAAGTTTCCAACACTAAAAAACCCCTTTTTTTCTACGTGAATCTTGCCAAGAGATACATGCAACAGCACACAGAGGTGGAGCTCTCTGCTCTTGGAATGGCCATCGCAACAGTTGTCACAATTGCTGAGATTTTGAAGAACAACGGATTTGCTGTTGAGAAGAAAATAACCACTTCAACAGTCGACATCAATGAATCAGGTGGGAGGCCTGTCCAGAAAGCTAAGATCGAGATTGTACTGGAGAAGTCAGAGAAATTCGATGAGCTGATGGCCGCTGCTGCAGCAGAGGCTGCTGAAGAAGAGGAGCAGGCGTAGGATGTCCAAGCTCTACAGTTTTATCTATCAGACTATCAGTCTCTATTGTGTGTTTGCTGCTGGGTTGTCTTGATTTCTGCCAAGTAAATTGTACTAACAGATTTAGCTACAAAGGCTTTCCCTATCAATTTTGTAACACAAGGAAACAAATCTTGTACTGGCTTCTCACACTGCAAATTGTCATTTATTATTTATGTTATGCTTATAGGATTTTTGATTGTCGCATTCACTTTAATTACTATCAAGTACTGGTAAAAGTTCGTCGATAGTTATGGCTTGCAAAGATCGTCACTCTTAGAGAACTTGATTGTATTTGTTGTTAATCCAATATGCAGGGTAATGTAATTCATACTTCTGCAATAATTGAGAACACAGGTTCACGCGTTCACCTACAGCGCTGCAACTTTGAACAATAGCGACACACGAATTCCTAACGCCCAATTTCTGTCCTTTTAGCCCACGATGCACACTACACAAACATAGCTCACCAAATCAAAAACAGTGGCTCAATAAAAAC

Coding sequence (CDS)

ATGGAGCAGGTTGCAGAGGCCGTTAGCAATCTCACCATCACAGATTCACCCAACAACAATGAAAATAACAACAACAATGAGAACAACAACAACAACAACCACAACAACAGCAGCAGCAATTTCAACAACAACAAGAAAAACCGTATTCAAGTTTCCAACACTAAAAAACCCCTTTTTTTCTACGTGAATCTTGCCAAGAGATACATGCAACAGCACACAGAGGTGGAGCTCTCTGCTCTTGGAATGGCCATCGCAACAGTTGTCACAATTGCTGAGATTTTGAAGAACAACGGATTTGCTGTTGAGAAGAAAATAACCACTTCAACAGTCGACATCAATGAATCAGGTGGGAGGCCTGTCCAGAAAGCTAAGATCGAGATTGTACTGGAGAAGTCAGAGAAATTCGATGAGCTGATGGCCGCTGCTGCAGCAGAGGCTGCTGAAGAAGAGGAGCAGGCGTAG

Protein sequence

MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10133.1Spo10133.1mRNA


Homology
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|902189027|gb|KNA11277.1| (hypothetical protein SOVF_136710 [Spinacia oleracea])

HSP 1 Score: 253.1 bits (645), Expect = 3.200e-64
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNE-NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60
           MEQVAEAVSNLTITDSPNNNENNNNNE NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF
Sbjct: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60

Query: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120
           FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP
Sbjct: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA
Sbjct: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|731320146|ref|XP_010670649.1| (PREDICTED: uncharacterized protein At2g34160-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 208.0 bits (528), Expect = 1.200e-50
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           MEQV E VSNLT+TDS   ++N NN  NNNNNN      NFNNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEQVTEGVSNLTVTDS---SDNTNNTTNNNNNN------NFNNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120

Query: 121 QKAKIEIVLEKSEKFDELMAAAAAEAAE-EEEQA 154
           QKAKIEIVLEKSE FDELMAAAAAE A+ EEEQA
Sbjct: 121 QKAKIEIVLEKSENFDELMAAAAAEEADAEEEQA 145
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|728807761|gb|KHF97780.1| (hypothetical protein F383_15777 [Gossypium arboreum])

HSP 1 Score: 170.2 bits (430), Expect = 2.700e-39
Identity = 110/155 (70.97%), Postives = 118/155 (76.13%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS  +N                     NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDSSPSN---------------------NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG AVEKKI TST+D+  ESGGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTIDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLAKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|590579644|ref|XP_007013844.1| (Alba DNA/RNA-binding protein [Theobroma cacao])

HSP 1 Score: 169.5 bits (428), Expect = 4.600e-39
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL ITDS  +                        NKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNITDSSAS------------------------NKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNG AVEKKI TSTVD+  ESGGRP
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTVDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAA+A E  + EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAASAEEVLDNEEQS 130
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|823154438|ref|XP_012477094.1| (PREDICTED: uncharacterized protein At2g34160-like [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 6.100e-39
Identity = 110/155 (70.97%), Postives = 119/155 (76.77%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS                    S+SN NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDS--------------------SASN-NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINES-GGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG A+EKKI TST+D+ E  GGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAIEKKIMTSTIDMREELGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136710 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.200e-64
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNE-NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60
           MEQVAEAVSNLTITDSPNNNENNNNNE NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF
Sbjct: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60

Query: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120
           FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP
Sbjct: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA
Sbjct: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT73_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042840 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.200e-51
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           MEQV E VSNLT+TDS   ++N NN  NNNNNN      NFNNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEQVTEGVSNLTVTDS---SDNTNNTTNNNNNN------NFNNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120

Query: 121 QKAKIEIVLEKSEKFDELMAAAAAEAAE-EEEQA 154
           QKAKIEIVLEKSE FDELMAAAAAE A+ EEEQA
Sbjct: 121 QKAKIEIVLEKSENFDELMAAAAAEEADAEEEQA 145
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MFW9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15777 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.900e-39
Identity = 110/155 (70.97%), Postives = 118/155 (76.13%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS  +N                     NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDSSPSN---------------------NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG AVEKKI TST+D+  ESGGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTIDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLAKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A061GPW4_THECC (Alba DNA/RNA-binding protein OS=Theobroma cacao GN=TCM_038396 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.200e-39
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL ITDS  +                        NKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNITDSSAS------------------------NKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNG AVEKKI TSTVD+  ESGGRP
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTVDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAA+A E  + EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAASAEEVLDNEEQS 130
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G274000 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.200e-39
Identity = 110/155 (70.97%), Postives = 119/155 (76.77%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS                    S+SN NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDS--------------------SASN-NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINES-GGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG A+EKKI TST+D+ E  GGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAIEKKIMTSTIDMREELGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. ExPASy Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.100e-35
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 1 

		  

Query: 35  NNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEIL 94
           NN +   ++ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVT+ EIL
Sbjct: 9   NNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEIL 68

Query: 95  KNNGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQ 153
           KNNGFAVEKKI TSTVDI +++ GRPVQKAKIEI L KSEKFDELMAAA  E  + E Q
Sbjct: 69  KNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQ 127
[Close]
BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Match: AT1G29250.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 156.0 bits (393), Expect = 1.900e-38
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 1 

		  

Query: 35  NNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEIL 94
           NN +   +  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+T+VELSALGMAIATVVT+AEIL
Sbjct: 9   NNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEIL 68

Query: 95  KNNGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAA--AAEAAEEEE 153
           KNNGFAVEKKI TSTVDI ++S GRPVQKAKIEI L KSEKFDELMAAA    EAAE +E
Sbjct: 69  KNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEEKEAAEAQE 128
[Close]
BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Match: AT2G34160.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.800e-36
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 1 

		  

Query: 35  NNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEIL 94
           NN +   ++ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVT+ EIL
Sbjct: 9   NNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEIL 68

Query: 95  KNNGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQ 153
           KNNGFAVEKKI TSTVDI +++ GRPVQKAKIEI L KSEKFDELMAAA  E  + E Q
Sbjct: 69  KNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQ 127
[Close]
BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Match: AT3G04620.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 131.7 bits (330), Expect = 3.800e-31
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 1 

		  

Query: 37  SSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKN 96
           +++    +KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVTI+EILKN
Sbjct: 28  TTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKN 87

Query: 97  NGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEE 152
           NG A EKK+ TSTV + +E+ G+ VQKAKIEIVL KS+KFD L+         EEE
Sbjct: 88  NGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEE 143
The following BLAST results are available for this feature:
BLAST of Spo10133.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902189027|gb|KNA11277.1|3.2e-6499.3hypothetical protein SOVF_1367... [more]
gi|731320146|ref|XP_010670649.1|1.2e-5085.7PREDICTED: uncharacterized pro... [more]
gi|728807761|gb|KHF97780.1|2.7e-3970.9hypothetical protein F383_1577... [more]
gi|590579644|ref|XP_007013844.1|4.6e-3968.8Alba DNA/RNA-binding protein [... [more]
gi|823154438|ref|XP_012477094.1|6.1e-3970.9PREDICTED: uncharacterized pro... [more]
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BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVH3_SPIOL2.2e-6499.3Uncharacterized protein OS=Spi... [more]
A0A0J8CT73_BETVU8.2e-5185.7Uncharacterized protein OS=Bet... [more]
A0A0B0MFW9_GOSAR1.9e-3970.9Uncharacterized protein OS=Gos... [more]
A0A061GPW4_THECC3.2e-3968.8Alba DNA/RNA-binding protein O... [more]
A0A0D2RBL2_GOSRA4.2e-3970.9Uncharacterized protein OS=Gos... [more]
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BLAST of Spo10133.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2416_ARATH3.1e-3576.4Uncharacterized protein At2g34... [more]
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BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G29250.11.9e-3880.1Alba DNA/RNA-binding protein[more]
AT2G34160.11.8e-3676.4Alba DNA/RNA-binding protein[more]
AT3G04620.13.8e-3168.1Alba DNA/RNA-binding protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likeGENE3D3.30.110.20coord: 45..152
score: 8.4
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 47..107
score: 3.9
IPR002775DNA/RNA-binding protein Alba-likeunknownSSF82704AlbA-likecoord: 46..140
score: 3.79
IPR014560Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-relatedPIRPIRSF030333UCP030333_Albacoord: 1..153
score: 2.8
NoneNo IPR availablePRODOMPD010497coord: 55..131
score: 0
NoneNo IPR availableunknownCoilCoilcoord: 132..152
scor
NoneNo IPR availablePANTHERPTHR31947FAMILY NOT NAMEDcoord: 36..153
score: 1.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006788 heme oxidation
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0009658 chloroplast organization
biological_process GO:0010024 phytochromobilin biosynthetic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0042793 plastid transcription
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009902 chloroplast relocation
biological_process GO:0008152 metabolic process
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0009156 ribonucleoside monophosphate biosynthetic process
biological_process GO:0006479 protein methylation
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0006007 glucose catabolic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0034051 negative regulation of plant-type hypersensitive response
biological_process GO:0006546 glycine catabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0016556 mRNA modification
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009611 response to wounding
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0019748 secondary metabolic process
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0009536 plastid
cellular_component GO:0009509 chromoplast
cellular_component GO:0009513 etioplast
cellular_component GO:0009579 thylakoid
cellular_component GO:0009295 nucleoid
cellular_component GO:0009537 proplastid
cellular_component GO:0009501 amyloplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005886 plasma membrane
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0016020 membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0009349 riboflavin synthase complex
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0005488 binding
molecular_function GO:0015297 antiporter activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0004749 ribose phosphate diphosphokinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000906 6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function GO:0008276 protein methyltransferase activity
molecular_function GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004392 heme oxygenase (decyclizing) activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0043565 sequence-specific DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo057330.82Barchart | Table
Spo266730.81Barchart | Table
Spo218080.78Barchart | Table
Spo157930.78Barchart | Table
Spo229990.78Barchart | Table
Spo050780.77Barchart | Table
Spo240160.77Barchart | Table
Spo043770.77Barchart | Table
Spo266440.76Barchart | Table
Spo112210.76Barchart | Table
Spo014960.76Barchart | Table
Spo022140.76Barchart | Table
Spo239330.75Barchart | Table
Spo182960.75Barchart | Table
Spo225300.75Barchart | Table
Spo092100.73Barchart | Table
Spo047090.73Barchart | Table
Spo232490.73Barchart | Table
Spo263310.73Barchart | Table
Spo217570.73Barchart | Table
Spo086250.73Barchart | Table
Spo037850.72Barchart | Table
Spo009210.72Barchart | Table
Spo182610.72Barchart | Table
Spo158410.71Barchart | Table
Spo026480.71Barchart | Table
Spo144690.71Barchart | Table
Spo272910.71Barchart | Table
Spo205110.70Barchart | Table
Spo000270.70Barchart | Table
Spo194180.70Barchart | Table
Spo247500.70Barchart | Table
Spo259130.70Barchart | Table
Spo012720.70Barchart | Table
Spo132400.70Barchart | Table
Spo224850.70Barchart | Table
Spo192880.70Barchart | Table
Spo101060.69Barchart | Table
Spo027510.69Barchart | Table
Spo028160.69Barchart | Table
Spo029640.69Barchart | Table
Spo039720.69Barchart | Table
Spo050840.69Barchart | Table
Spo056070.69Barchart | Table
Spo087150.69Barchart | Table
Spo236240.69Barchart | Table
Spo248710.69Barchart | Table
Spo184780.68Barchart | Table
Spo008060.68Barchart | Table
Spo088790.68Barchart | Table
Spo012410.68Barchart | Table
Spo063980.68Barchart | Table
Spo066460.68Barchart | Table
Spo259120.68Barchart | Table
Spo149990.68Barchart | Table
Spo150250.68Barchart | Table
Spo153890.68Barchart | Table
Spo122280.68Barchart | Table
Spo113410.68Barchart | Table
Spo165630.68Barchart | Table
Spo257730.68Barchart | Table
Spo175950.68Barchart | Table
Spo008720.68Barchart | Table
Spo105070.68Barchart | Table
Spo253950.68Barchart | Table
Spo240540.68Barchart | Table
Spo133740.67Barchart | Table
Spo138360.67Barchart | Table
Spo118300.67Barchart | Table
Spo114450.67Barchart | Table
Spo181500.67Barchart | Table
Spo081060.67Barchart | Table
Spo210740.67Barchart | Table
Spo215010.67Barchart | Table
Spo058410.67Barchart | Table
Spo049950.67Barchart | Table
Spo025190.67Barchart | Table
Spo022210.67Barchart | Table
Spo020010.67Barchart | Table
Spo148570.66Barchart | Table
Spo144280.66Barchart | Table
Spo145780.66Barchart | Table
Spo002140.66Barchart | Table
Spo094410.66Barchart | Table
Spo074900.66Barchart | Table
Spo232270.66Barchart | Table
Spo119330.65Barchart | Table
Spo168440.65Barchart | Table
Spo014520.65Barchart | Table
Spo069160.65Barchart | Table
Spo067750.65Barchart | Table
Spo221820.65Barchart | Table
Spo260060.65Barchart | Table
Spo203870.65Barchart | Table
Spo234450.65Barchart | Table
Spo186950.65Barchart | Table
Spo144830.65Barchart | Table
Spo183980.65Barchart | Table
Spo240810.65Barchart | Table
Spo243100.65Barchart | Table