Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAACTGATCGTCACTAGAGGCTCTCCGACTGAGCTTGTCAGCTTGGGTAAATTAAGACTTAAAACTTAAAAGTAGCTTCACAATTTCATTAGTCAACCAACAAACACCAATCTCTCTCTGAGAAGAAAGAAATAATGGGAGACAAAAGAGCAAGTCCGACGGCGGTGAAGCAGCTGTCACGATGGATTCGAAGCAGATCGGTGAGACAGCAAGTAAGCATGGCGTCAATGGCAGCTTTCATACTACTCATTTTTATGAAAGTTTTCGTCAAAAATTACACTTATTTCTATGTCGCTGCTCAACTTGCTCATTCTATCGGCATCTTAGTCTTAATTTACAAGCTCACCATCACCAAAACTTGTTCTGGTAATTTTCTCTTTCCCCTTATTAATATCCAATTCAACAACTATTTTTGATCCTTTCCTGATTAAAATACTATAACTCATTATTTGATTTGGTTGTTTTTTGCTTGAAATCTCAATCATTTTTCTGAAATTAAAATTAAACTGAAATAGAATTTGTCAAGGGTTTGGGGAATTGGGGCGTAGTTCTTGAATGTGTCGCCGGGAGAGATATGGAATTGGGCGGGCCGGCCCGAGCGCGAAGTTATGGTCATTACTCGGGCTGCATTTAATTAGAAAAGCACGACAATGAATGACACATGTTAAAATTAATGATGACATGATTTTTAATTCCTTATACGGAGTACTCGGTATACTCTTGAATTGTAGGGTCCGGATTAGAATTTTAATAAAGAATCCAAGTCATTCTTGTTTCTCACAGTAAGATTAGTATTGCTAATTTGGATAAAATATGGGGTAATAAACTCGTACAGAGTAGTAACTCATAATGTGACAATGTTCAGAAAGTGAGGTAAATGTTGACATGTTAATACAATAACAAAAGAAAGAAAAGTGACAGTCGGTCCCCAGGGGCCAGGGCTAGGGCCGCGTGTAACGGAGTTTAGGTCCACTATATTTAGAGTACCCGTGGCCGTGTAGCCCGTGCAAGCTTGGCAGGTGCAACAACACCTTGTTTGTTAGTTCATCCATTTGTTCAATTAAGTGTATGTAACAACACCTAATTAACTAACTATTCAGTACTCACACAGTCACACTATTATTGTTTGATTAATGTTCACCCGATTTCTTTTATTTATTTATTGAAGGGGGTTGGGTCATGTCAGTTTCGTATTGGGAGTCTCACCACTAGGGATAGAAATAGGTGAGATTTACCCGTAGGGATGGCAATGGATTGGATTCGGGTCGGATTTGGTAAACTCCAAATCCGATCCATCTAAAATTCGGACTCTAAAAGTGCATCCATATCCAAATCCATTTAAAATTCGGACTCAAAAAACTACATCCATATCCAAATCCGAATCCATATCCATATCCAAATCCAAATCATGCTTTAACTTTACTTACATAGAAATTGTATTTCTTAATTTTAAAATAAATTAAAAATCATATTTTTACTAAAATCTAATGAGTTTCTAATAAATTAATAATTTACAAATATATGCGCTTTAATTAAATATATTAGAATAAAGTAGGAACATCCTTTTAAAAAAAAATTATGTACGAAAAATAATACACTTTGAAATAATTTCGAGTATGATTTGGACATGGATTCGGACTCGGGTCGGATTTGGATCGGAGTCTTTGCAGACTCCATATCCGATCTATATCCATTCGGATTCGAATGTTTTTTATCGGATTAGGACTATTTTTCTCGGATTCGGATCGGATTTTTTCCTTCGGACTCGGTTCGGATTCGGATGTGATTGCCATCCATTCACCCGCGTTCATCCGCTCCACCCGGTCCATCCATCACCCGCTTTACTTATCACCCACGTTCCATCCATCCATCGCCCGCCGGTGAACCGGGTGGATTGGGTGAAAACTATTAACCACATAAAAAGCTTATGTACCTACATTTACTTCCAAAACATATAATTGTTTCTCATTACACATAACTTATAACCCAAAAAAATTAATCAAACCCAAATATTGGATTTACCAACACCTTTTATGTTTAAAATAATAAAAAAATATATAAAATAAATGGGTGATAAACGGGTGGTGGGTCGTGTGATGGATGAAAAAACATCACCTGCATCCGACCCGCATCCATCACCCGCTTCACCCATTACCCGCTTTTCTCCATTTAATTCGGATTTTCCGTTTAATTATAGTGGGTGAGCGGATTATTAGATCATCACTGTATATTTCCATCCCTACTTACCACTAATGTAACTCCTGAATCGTGTCATTCATGTCGTGTTAACACGTTTAAATAATGAATCATTAACTCTTACTCCCTCTGTTCCGAATACTTGTGTTTGCGCATAGTTTTAGGAATGTTTTGGGTAGGACGTACATGGATATGAATAAATTAATGTGCAAGTGGGATAAAAGGAGAGATTAGCAAAAAGATGTAGTGGACCCATGGCAAAAGTAAAAGTGTTGCAAGTATTCGGAAACGGCTAAGAAATTCAAGTGTTGTAAGTATTCGGAGGGAGTAACATTGACCCACTTTTTTCATGTACGGATCATGTCGTGTCATCTTTTTTCATGTTAATATAGCCACCAAAACTCAATCATGCCACCCTTCTTTCTCCACTCAACTGTGTATTGAGTTGGACGTGGCTATGTTAACCGGTTGAGCAGGTTAATTACGAGTAAGGATCATTTTCAAATGTCATCCTTAAAAATTGTTTAATAGTTGGGGGGGCTGATGACAATTTTTACTAAATATTTTTGACAAAAAGTGGCTCCTTAGTTCAATTTAGGCTATCTATCGTACATTCATACACGTATATATGCATTCTTCTAGTAATTTGTGTGTGTATCCTTGATGATCTTCACAGGTTTATCATTGAAGACTCAGGAACTAACGGCAATATTCTTAACCATGAGAATCGCATGCCATTTTATGCTCATACGTGATATTTACGTAATACTTGATTCTCTAACCCTTGTATCTACTCTCTGGGTGATCTATATGATACGGTTTAAGTTGAAGCAAACCTACATGCAAGAGCTTGACAATATGCCTTTGTATTATGTGGTAAGTAATACTCCAAAACAACTGTATTTTACAGAAAAAGGAGAGAAATGAATCCGGTGCCTTGTGCCATTATTTATCAATGGACAACTTTTGCACTATTTTTATCTCAGATATTACTAAGCATGAGTAATAACTAATAAGGATGTACATGTAACTTTTGCTATTTACAGCTGGTGCCTTCTGCGGTGGTTGCAATAATAGGCCATCCTGGATTCGGAGTTAACATTGGCTTCAGATTCTTCTATATGTATTCTAAGACAATAGAAGCCGTTTCAGTGCTTCCTCAGCTGCGCTTAATACAAAATGCTAAGGTACTGTAAGTCTAGCTTTGATACTCAAGTTATAAACTCTTTCTTTGATAAAGATCATCATTTCGGATAGTAGAATAATGAAAATCTTCGAACTTTCTTTATATTAATTTGTGGGTTGAGTGAGAAGTTAGATTGTTCAGTTGAGTCATTCCTCAATTTAGGCCTGCCGTGGTAAAGCGCTCAAGTACCTTATAAGGAGTAGGAGTTTAACTGGGTGAGTTCATGATAGTCATTCATTTTTTTATTTTTTTTGTGTTACCCCCCGGTTCACCCTTAGGGCTAATCCGGATTCGGGGCGAGTTCTGGGTGGATAGATTCTAATCCCCTCCCAATTGTTGTTGCGGGGGATCGAACACGTTGTCCGCCCTACCAAGTTCATCCCCAATCACCAATCACCACTGAACCAACACGTAATTGGTTATAGTCATTCATGCATATTTAATTATAATCGTGGCAATGTGCATGCTCATAATTGTAGCAGTAATTACTACAATTAGAAGCAAACTTCACGTTTCTATCTATGTATCTGCCTCATGAGTAACATTGATTAATTACTATTTTCTTTGATAGTCCATAAAAGAATCAAATCTTCTCTTTCTCCTTGTTTTTCCTTTGTGTTTCAGGTGGTCGAACCATTTACCGCCCATTATGTATTTGCCCTGGGCGTTGCAAGATTCTTAGCCTGTGCAAATTGGTTGATCATGGTAAGGATTCAGTATCCAATTTACTTTCTCAAGTATCCAATTTACAAACCCAGGTCATGGACCTAGAAGATGGAATAACACTACAGACTGTACAGTCACTGATTTTCCTCCCACTCATAGTGTTAAATTAAATCACTCATTGATGAATATATTGTAAATTGATCAAAAGAAAATTTAATTTGCGCTATTATATGTCATAAATTTGTCTAACATTTCTCGATTAACCACCTTATTTTTCTGCTACATGCAGCTTGTTGACAGCAACGGAGTAATTCTGATGCAAATCGGGAAAGGACATCTTTATGTACTAGTTGCTCTTCTCGCTGAGGTGGTTCAAACTTTCATCTTGGCAGATTTCTGTTATTACTATATCAAGAGGTATGTTAATTCTGGAATTCACAAACGAGTATATTTTTCCCTTCGTTGTTACCATCTAGCTCAAATTTCACTAATCATAGCCACAGATTGACAGTTACTAGTTTTTGGTGAAGATACTCTAATCTTGAGTGGTCTATCTATTTTACTGAATCTATTAAAATTCCACATTTAACACTGTTTTGAGGTATTGTAGCATTAGGTATTGTAACAAATTACAAAATCCCATTTCCTTTTACCCCCTTTAACTTTCTTTGGTATTGTAACAAATTACAAAATCTAATAACTAAATGGTTTTGACAGTGTCGTGGAGGGACGAAGCATGGTGAGACTACCTTCAATGGTCTGA TAACTGATCGTCACTAGAGGCTCTCCGACTGAGCTTGTCAGCTTGGGTAAATTAAGACTTAAAACTTAAAAGTAGCTTCACAATTTCATTAGTCAACCAACAAACACCAATCTCTCTCTGAGAAGAAAGAAATAATGGGAGACAAAAGAGCAAGTCCGACGGCGGTGAAGCAGCTGTCACGATGGATTCGAAGCAGATCGGTGAGACAGCAAGTAAGCATGGCGTCAATGGCAGCTTTCATACTACTCATTTTTATGAAAGTTTTCGTCAAAAATTACACTTATTTCTATGTCGCTGCTCAACTTGCTCATTCTATCGGCATCTTAGTCTTAATTTACAAGCTCACCATCACCAAAACTTGTTCTGGTTTATCATTGAAGACTCAGGAACTAACGGCAATATTCTTAACCATGAGAATCGCATGCCATTTTATGCTCATACGTGATATTTACGTAATACTTGATTCTCTAACCCTTGTATCTACTCTCTGGGTGATCTATATGATACGGTTTAAGTTGAAGCAAACCTACATGCAAGAGCTTGACAATATGCCTTTGTATTATGTGCTGGTGCCTTCTGCGGTGGTTGCAATAATAGGCCATCCTGGATTCGGAGTTAACATTGGCTTCAGATTCTTCTATATGTATTCTAAGACAATAGAAGCCGTTTCAGTGCTTCCTCAGCTGCGCTTAATACAAAATGCTAAGGTGGTCGAACCATTTACCGCCCATTATGTATTTGCCCTGGGCGTTGCAAGATTCTTAGCCTGTGCAAATTGGTTGATCATGCTTGTTGACAGCAACGGAGTAATTCTGATGCAAATCGGGAAAGGACATCTTTATGTACTAGTTGCTCTTCTCGCTGAGGTGGTTCAAACTTTCATCTTGGCAGATTTCTGTTATTACTATATCAAGAGTGTCGTGGAGGGACGAAGCATGGTGAGACTACCTTCAATGGTCTGA ATGGGAGACAAAAGAGCAAGTCCGACGGCGGTGAAGCAGCTGTCACGATGGATTCGAAGCAGATCGGTGAGACAGCAAGTAAGCATGGCGTCAATGGCAGCTTTCATACTACTCATTTTTATGAAAGTTTTCGTCAAAAATTACACTTATTTCTATGTCGCTGCTCAACTTGCTCATTCTATCGGCATCTTAGTCTTAATTTACAAGCTCACCATCACCAAAACTTGTTCTGGTTTATCATTGAAGACTCAGGAACTAACGGCAATATTCTTAACCATGAGAATCGCATGCCATTTTATGCTCATACGTGATATTTACGTAATACTTGATTCTCTAACCCTTGTATCTACTCTCTGGGTGATCTATATGATACGGTTTAAGTTGAAGCAAACCTACATGCAAGAGCTTGACAATATGCCTTTGTATTATGTGCTGGTGCCTTCTGCGGTGGTTGCAATAATAGGCCATCCTGGATTCGGAGTTAACATTGGCTTCAGATTCTTCTATATGTATTCTAAGACAATAGAAGCCGTTTCAGTGCTTCCTCAGCTGCGCTTAATACAAAATGCTAAGGTGGTCGAACCATTTACCGCCCATTATGTATTTGCCCTGGGCGTTGCAAGATTCTTAGCCTGTGCAAATTGGTTGATCATGCTTGTTGACAGCAACGGAGTAATTCTGATGCAAATCGGGAAAGGACATCTTTATGTACTAGTTGCTCTTCTCGCTGAGGTGGTTCAAACTTTCATCTTGGCAGATTTCTGTTATTACTATATCAAGAGTGTCGTGGAGGGACGAAGCATGGTGAGACTACCTTCAATGGTCTGA MGDKRASPTAVKQLSRWIRSRSVRQQVSMASMAAFILLIFMKVFVKNYTYFYVAAQLAHSIGILVLIYKLTITKTCSGLSLKTQELTAIFLTMRIACHFMLIRDIYVILDSLTLVSTLWVIYMIRFKLKQTYMQELDNMPLYYVLVPSAVVAIIGHPGFGVNIGFRFFYMYSKTIEAVSVLPQLRLIQNAKVVEPFTAHYVFALGVARFLACANWLIMLVDSNGVILMQIGKGHLYVLVALLAEVVQTFILADFCYYYIKSVVEGRSMVRLPSMV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09935.1 vs. NCBI nr
Match: gi|902227464|gb|KNA20701.1| (hypothetical protein SOVF_049900 [Spinacia oleracea]) HSP 1 Score: 517.3 bits (1331), Expect = 1.600e-143 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo09935.1 vs. NCBI nr
Match: gi|731368630|ref|XP_010696251.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 470.3 bits (1209), Expect = 2.300e-129 Identity = 239/275 (86.91%), Postives = 263/275 (95.64%), Query Frame = 1
BLAST of Spo09935.1 vs. NCBI nr
Match: gi|902227465|gb|KNA20702.1| (hypothetical protein SOVF_049910 [Spinacia oleracea]) HSP 1 Score: 438.3 bits (1126), Expect = 9.600e-120 Identity = 226/275 (82.18%), Postives = 251/275 (91.27%), Query Frame = 1
BLAST of Spo09935.1 vs. NCBI nr
Match: gi|731368618|ref|XP_010696244.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 422.5 bits (1085), Expect = 5.500e-115 Identity = 217/275 (78.91%), Postives = 251/275 (91.27%), Query Frame = 1
BLAST of Spo09935.1 vs. NCBI nr
Match: gi|731368637|ref|XP_010696254.1| (PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 399.8 bits (1026), Expect = 3.800e-108 Identity = 202/275 (73.45%), Postives = 239/275 (86.91%), Query Frame = 1
BLAST of Spo09935.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMG1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049900 PE=4 SV=1) HSP 1 Score: 517.3 bits (1331), Expect = 1.100e-143 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo09935.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAV7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178740 PE=4 SV=1) HSP 1 Score: 470.3 bits (1209), Expect = 1.600e-129 Identity = 239/275 (86.91%), Postives = 263/275 (95.64%), Query Frame = 1
BLAST of Spo09935.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPE3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049910 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 6.700e-120 Identity = 226/275 (82.18%), Postives = 251/275 (91.27%), Query Frame = 1
BLAST of Spo09935.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAU4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178750 PE=4 SV=1) HSP 1 Score: 422.5 bits (1085), Expect = 3.800e-115 Identity = 217/275 (78.91%), Postives = 251/275 (91.27%), Query Frame = 1
BLAST of Spo09935.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7X2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178780 PE=4 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 2.600e-108 Identity = 202/275 (73.45%), Postives = 239/275 (86.91%), Query Frame = 1
BLAST of Spo09935.1 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein-retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=3 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.400e-22 Identity = 71/223 (31.84%), Postives = 123/223 (55.16%), Query Frame = 1
BLAST of Spo09935.1 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein-retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 7.300e-19 Identity = 71/225 (31.56%), Postives = 122/225 (54.22%), Query Frame = 1
BLAST of Spo09935.1 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein-retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.800e-18 Identity = 65/218 (29.82%), Postives = 116/218 (53.21%), Query Frame = 1
BLAST of Spo09935.1 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein-retaining receptor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erd2 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.800e-18 Identity = 67/226 (29.65%), Postives = 118/226 (52.21%), Query Frame = 1
BLAST of Spo09935.1 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein-retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.000e-16 Identity = 66/219 (30.14%), Postives = 113/219 (51.60%), Query Frame = 1
BLAST of Spo09935.1 vs. TAIR (Arabidopsis)
Match: AT3G25160.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 279.3 bits (713), Expect = 2.600e-75 Identity = 142/269 (52.79%), Postives = 205/269 (76.21%), Query Frame = 1
BLAST of Spo09935.1 vs. TAIR (Arabidopsis)
Match: AT2G21190.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 263.1 bits (671), Expect = 2.000e-70 Identity = 141/267 (52.81%), Postives = 195/267 (73.03%), Query Frame = 1
BLAST of Spo09935.1 vs. TAIR (Arabidopsis)
Match: AT1G19970.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 261.2 bits (666), Expect = 7.400e-70 Identity = 131/271 (48.34%), Postives = 200/271 (73.80%), Query Frame = 1
BLAST of Spo09935.1 vs. TAIR (Arabidopsis)
Match: AT4G38790.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 258.5 bits (659), Expect = 4.800e-69 Identity = 139/272 (51.10%), Postives = 193/272 (70.96%), Query Frame = 1
BLAST of Spo09935.1 vs. TAIR (Arabidopsis)
Match: AT1G75760.1 (ER lumen protein retaining receptor family protein) HSP 1 Score: 256.5 bits (654), Expect = 1.800e-68 Identity = 132/271 (48.71%), Postives = 202/271 (74.54%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09935.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09935.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09935.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09935.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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