Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCCTCTCCAGTGTCCACTGTCCAGTCAGGGCCCAACATTCGATACAAATGTGGCGATCCTGTAAACCACGTATTCTTCTTCAAGAAGTCATCAATTGATTCAATTCCCACCTAAAACACAAAAACCGTCGCAAACTGTGGTAAGATAATACAGTACCATTACCATCTGACGCGCAAATGGCTGCTAAGCTAATGCATGCGATTCAATATTCTGGCTATGGTGGTGGAACTGATGCTTTAAAGGTCTATTTTTTCTCTTCTTTTTCTTCTCGCTTTCTTAATCTTTTAACGCATTTATCTTTAAATTGAGTAATAATTACCTAATTTTTAATTTCCGTCAAAATTTTGATTGATTTTTTTGACTGGTTTTTCATTTTTGATGTATTCGTTAGCAATAGAAGTTGAAGATTGATGATAGAATTATAGTACTATTAAACACCCAATTTGTTGATTTGTGGGAGGAGGGTTTTTGTGGATGACCACATGAAATAGACTCTTGGTTCATGCAACCGACCCCGTCTCATTGGGACTGAGGCTGTGGCTTTGGTGAAGTTGTAGTTCTTGTTGTTAAGGGAGGAGAGAAGTTGAAGTAGATTAGCAAATGGGAATTTTCTTTTGATTCATCTGGATTAGTACTGTATTTATAAGATGGGTGTTTGACAAATTGAAAAGGCTTCGTTTTAGTTCATTTATTTTAGGAATAGAAAAACCGCAAATTTGGAGTTTAATTGGCTGATGAATGGGCGGTGCTGTATACTTAATTATACTTGTTTATATAATCCCCATTTACCATTGTGCCAAATTGCCAATCATAGGATATCTTTAGGTGATTTTGCTTAAAGGGAATCTTTAAATATGTGGTTATGCTAAAGAGAGAGGGAGCAGTACAAAATGTTGATCATATAAAATGTAGTTTGTAAGTGTGAACGGTTTCATTTGAGGATTTATTGTTTGGTGCTATGCATAGAGTCATAGAGTTACTGCTGAAAGGAGTGAAAGGGACGTGGACGTCAAGTTATCCAAGAGGAGCTCAATCTGCTTGAAGTCCGTCTCCTATCCTTTGGATTTAGGAAGTTATACCCTTTATGGTTGGAGTTTCCAAGCTTCCTATGCCATTTTTCTTTGCTGTTTCAGCACTTCAAGTGTAGTTGACGTATACCTCTGCTTATTCAAGTGTACATATTGAACTTTAGTGTCAGCTACAAGAAAGAAGAGTCATCATTTTTTGCTCTTGAACTTTGTTCATAGTCACTAGTTTATTGATGTATGCTGTATGTTTGAATATTTTGTGCATTAATTAAGCAGATAAACGGAACTTTAACAAGAAACAGATGAAATAAGCCTTAACCAAAATGTTCATTTGGAGATTTCTCAATAGTGTTGTTGTCTGTTTTGCAGCATGTTGAAGTTGCTGTTCCTGATCCAAAGTCTGATGAGTTATTGCTTAAAATTGAGGCTGCAACTTTGAACCCAATTGATTGGAAGATTCAGAAGGGTGTACTTCGTCCCCTCTTACCCCGCAAGTTCCCTACTATACCTGGTATGTCATTATCTGTTGTCTCATTCACATTCTTCCCTCAAGGCTTAACTTAGTGCAGCAAATGTTGTACACTTTTTGAGCAGCTTGATTTTGACCTTCTGTCAAATTTGTGAAAGTGCGATGTTGGATTGTACTTGTCTATTGTTGAGCATGAGTTTTGTACTGGGTGGATGACAATGCTCCTATGCACCCCATGATTTTTTATCCGCTCAAGTGGATCAACACCCAACTCCTGCAGGAGATCACCCCCCTCCCCAATCAGATGCATTAGCTTTTTAAAGAGAAGTGCCGTTCTTGACTGACATTTAAAGTTGGTTTGTATATCCACCCTCCACCACGCTCTGTTCTGTGAGCAGCCTGTTGTACTATAGTAGTCTGTTATGGTAGTAGTCAGTTGCAGCGGTTCACCCTATTTATGGAGCATGTGATTTGTATTGGAGAGCTCAACATTTGAAACAGATAATGCTGTTGTACTATAGGAGTCTGTTATATGCTCAAGATTTTACTCTCTCTATGCTGCTGTGTTATGCTGTGGTATTCACATTTTAACTAATATCATGGTGAACAACAAGTTTGGAATTCCTAGTTCATTTTTATTCTTCTGGAAAGGCTACGGTTGCGCCCATTTTCTTTAAACTGTTCTCAATGTAGTGTAAAATATTGAAAAAGGCATAGTACAATCGGTTATGATTTTTGTTCAAGTTAAGGCAGTTCCTTGCAGGAAATATGATTATCTCTTCTATTATCTCGTCGTAGCTGAAGAGCAGTTTTGGTGTTGGTTCAGGAACTGATGTTGCTGGGGAGGTAGTCCAGGCTGGATCTGCTGTAAATAGGTTTAAAACTGGTGACAAAGTCGTGGCCGTGCTTAGTCATGCTGTAAGTTAATTGCTTTCCTGTTCTCATTCTTTCAACCAGAATAGGTTTCTTGAACTCCACATGAGAGAGGGACATACATGTTAAAGCACCTGCTATTTTGGTGAGATGGTCATAGTACTTATAGGTGATATGCCCTATCTCATAAGTGAAAAAATAAGCTCGGTGAAAACCAAATATTTTACTGATGTTATTATTTCTGACAGACTGGGGGTGCACTAGCTGAATATGCCGTGGCGAAGGAGAACCTGACAGTTGCTAGACCACCAGAAGTATCAGCAGCAGAAGGTGCTGCCTTACCTGTTGCTGCCCTCACGGCTCACCAAGCTCTCACCCAGTTTGCCAACATCAAGCTCGATGGAAGTGGTGAAAGGAAGAACATATTGATCACGGCTGCATCAGGGGGTGTGGGCCACTATGCGGTCCAGCTGGCAAAGCTCGGGAACACGCATGTAACAGCAACATGTGGAGCCCGCAACCTAGATTTCGTGAAAGGCTTGGGTGCCGATGAGGTTCTTGACTACAAAACTCCGGAAGGGGCGTCCTTGACAAGCCCGTCAGGAAAGAAATATGACTACGTAGTCCACGGTGCAAGCGGAATCCCTTGGTCCACCTTTGAGCCCAATTTGAGTGAAGCAGGTAAGGTAATAGATTTGACTCCTGGCCCAACTGCAATGATGACATTTGCTTGGAAAAAGCTAACATTCTCCAAAAAGCAGCTGGTGCCTCTGCTTTTGATACCAAAGATCCCCAACTTTGAATATGTTGTGAATTTGGTAAAGGAAAAGAAGCTTAAAACAGTCATAGACTCTAAACATCCCTTGAGTAAAGGTGAAGATGCTTGGAGTAGGATAATGGGTGGTCATGCTACAGGGAAGATTATAATCGAGCCTTGAATAGAAAATATTGATGCAGACCCGCTATATATTGCTTGAAGGTTACAAACTTTTAAGTTTATAGTACTTGAGTTATACTTTCCTAGTTGTAAACATTCAAGTATTTCATAATGTTATACTTTCCTAGTTTCCTCCACTTGAGTTATACTTATACAGTTATACTCCTCGTTTCAAGCTTATAACTTGGTTTTGTCTAATGGAGAACTTGTTGAGGTTTTGGGCAAGCCATTGGTCTGGCGATTTCTTTTTAGGTTGTAAACATGTAAGTTAAAACTTACCTATGTGTCTTCATTTGTTTGTAGTTGTCTTGGCCTTTTTATACGGAGTAGTTGTATAGTATAGCTGATACAGAGAAATGACAGGAAAGCTTGAAGAATGTTGGATATTCCATTAGGATACGGTTAGGAGCGTCTACTCTTGTCTTTTATTGTTTAATTTTATTTAGTTA CCCCTCTCCAGTGTCCACTGTCCAGTCAGGGCCCAACATTCGATACAAATGTGGCGATCCTGTAAACCACGTATTCTTCTTCAAGAAGTCATCAATTGATTCAATTCCCACCTAAAACACAAAAACCGTCGCAAACTGTGGTAAGATAATACAGTACCATTACCATCTGACGCGCAAATGGCTGCTAAGCTAATGCATGCGATTCAATATTCTGGCTATGGTGGTGGAACTGATGCTTTAAAGCATGTTGAAGTTGCTGTTCCTGATCCAAAGTCTGATGAGTTATTGCTTAAAATTGAGGCTGCAACTTTGAACCCAATTGATTGGAAGATTCAGAAGGGTGTACTTCGTCCCCTCTTACCCCGCAAGTTCCCTACTATACCTGGAACTGATGTTGCTGGGGAGGTAGTCCAGGCTGGATCTGCTGTAAATAGGTTTAAAACTGGTGACAAAGTCGTGGCCGTGCTTAGTCATGCTACTGGGGGTGCACTAGCTGAATATGCCGTGGCGAAGGAGAACCTGACAGTTGCTAGACCACCAGAAGTATCAGCAGCAGAAGGTGCTGCCTTACCTGTTGCTGCCCTCACGGCTCACCAAGCTCTCACCCAGTTTGCCAACATCAAGCTCGATGGAAGTGGTGAAAGGAAGAACATATTGATCACGGCTGCATCAGGGGGTGTGGGCCACTATGCGGTCCAGCTGGCAAAGCTCGGGAACACGCATGTAACAGCAACATGTGGAGCCCGCAACCTAGATTTCGTGAAAGGCTTGGGTGCCGATGAGGTTCTTGACTACAAAACTCCGGAAGGGGCGTCCTTGACAAGCCCGTCAGGAAAGAAATATGACTACGTAGTCCACGGTGCAAGCGGAATCCCTTGGTCCACCTTTGAGCCCAATTTGAGTGAAGCAGGTAAGGTAATAGATTTGACTCCTGGCCCAACTGCAATGATGACATTTGCTTGGAAAAAGCTAACATTCTCCAAAAAGCAGCTGGTGCCTCTGCTTTTGATACCAAAGATCCCCAACTTTGAATATGTTGTGAATTTGGTAAAGGAAAAGAAGCTTAAAACAGTCATAGACTCTAAACATCCCTTGAGTAAAGGTGAAGATGCTTGGAGTAGGATAATGGGTGGTCATGCTACAGGGAAGATTATAATCGAGCCTTGAATAGAAAATATTGATGCAGACCCGCTATATATTGCTTGAAGGTTACAAACTTTTAAGTTTATAGTACTTGAGTTATACTTTCCTAGTTGTAAACATTCAAGTATTTCATAATGTTATACTTTCCTAGTTTCCTCCACTTGAGTTATACTTATACAGTTATACTCCTCGTTTCAAGCTTATAACTTGGTTTTGTCTAATGGAGAACTTGTTGAGGTTTTGGGCAAGCCATTGGTCTGGCGATTTCTTTTTAGGTTGTAAACATGTAAGTTAAAACTTACCTATGTGTCTTCATTTGTTTGTAGTTGTCTTGGCCTTTTTATACGGAGTAGTTGTATAGTATAGCTGATACAGAGAAATGACAGGAAAGCTTGAAGAATGTTGGATATTCCATTAGGATACGGTTAGGAGCGTCTACTCTTGTCTTTTATTGTTTAATTTTATTTAGTTA ATGGCTGCTAAGCTAATGCATGCGATTCAATATTCTGGCTATGGTGGTGGAACTGATGCTTTAAAGCATGTTGAAGTTGCTGTTCCTGATCCAAAGTCTGATGAGTTATTGCTTAAAATTGAGGCTGCAACTTTGAACCCAATTGATTGGAAGATTCAGAAGGGTGTACTTCGTCCCCTCTTACCCCGCAAGTTCCCTACTATACCTGGAACTGATGTTGCTGGGGAGGTAGTCCAGGCTGGATCTGCTGTAAATAGGTTTAAAACTGGTGACAAAGTCGTGGCCGTGCTTAGTCATGCTACTGGGGGTGCACTAGCTGAATATGCCGTGGCGAAGGAGAACCTGACAGTTGCTAGACCACCAGAAGTATCAGCAGCAGAAGGTGCTGCCTTACCTGTTGCTGCCCTCACGGCTCACCAAGCTCTCACCCAGTTTGCCAACATCAAGCTCGATGGAAGTGGTGAAAGGAAGAACATATTGATCACGGCTGCATCAGGGGGTGTGGGCCACTATGCGGTCCAGCTGGCAAAGCTCGGGAACACGCATGTAACAGCAACATGTGGAGCCCGCAACCTAGATTTCGTGAAAGGCTTGGGTGCCGATGAGGTTCTTGACTACAAAACTCCGGAAGGGGCGTCCTTGACAAGCCCGTCAGGAAAGAAATATGACTACGTAGTCCACGGTGCAAGCGGAATCCCTTGGTCCACCTTTGAGCCCAATTTGAGTGAAGCAGGTAAGGTAATAGATTTGACTCCTGGCCCAACTGCAATGATGACATTTGCTTGGAAAAAGCTAACATTCTCCAAAAAGCAGCTGGTGCCTCTGCTTTTGATACCAAAGATCCCCAACTTTGAATATGTTGTGAATTTGGTAAAGGAAAAGAAGCTTAAAACAGTCATAGACTCTAAACATCCCTTGAGTAAAGGTGAAGATGCTTGGAGTAGGATAATGGGTGGTCATGCTACAGGGAAGATTATAATCGAGCCTTGA MAAKLMHAIQYSGYGGGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09921.1 vs. NCBI nr
Match: gi|67460954|sp|Q8H0M1.1|QORH_SPIOL (RecName: Full=Quinone-oxidoreductase homolog, chloroplastic; AltName: Full=ceQORH) HSP 1 Score: 652.5 bits (1682), Expect = 3.900e-184 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1
BLAST of Spo09921.1 vs. NCBI nr
Match: gi|731368587|ref|XP_010696229.1| (PREDICTED: quinone-oxidoreductase homolog, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 578.6 bits (1490), Expect = 7.100e-162 Identity = 287/329 (87.23%), Postives = 308/329 (93.62%), Query Frame = 1
BLAST of Spo09921.1 vs. NCBI nr
Match: gi|731368585|ref|XP_010696228.1| (PREDICTED: quinone-oxidoreductase homolog, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 565.8 bits (1457), Expect = 4.800e-158 Identity = 278/329 (84.50%), Postives = 304/329 (92.40%), Query Frame = 1
BLAST of Spo09921.1 vs. NCBI nr
Match: gi|743918220|ref|XP_011003113.1| (PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Populus euphratica]) HSP 1 Score: 524.2 bits (1349), Expect = 1.600e-145 Identity = 257/329 (78.12%), Postives = 287/329 (87.23%), Query Frame = 1
BLAST of Spo09921.1 vs. NCBI nr
Match: gi|566152969|ref|XP_006369943.1| (hypothetical protein POPTR_0001s35600g [Populus trichocarpa]) HSP 1 Score: 522.7 bits (1345), Expect = 4.600e-145 Identity = 256/329 (77.81%), Postives = 287/329 (87.23%), Query Frame = 1
BLAST of Spo09921.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050040 PE=4 SV=1) HSP 1 Score: 652.5 bits (1682), Expect = 2.700e-184 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1
BLAST of Spo09921.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E1V4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178570 PE=4 SV=1) HSP 1 Score: 578.6 bits (1490), Expect = 5.000e-162 Identity = 287/329 (87.23%), Postives = 308/329 (93.62%), Query Frame = 1
BLAST of Spo09921.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B761_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178560 PE=4 SV=1) HSP 1 Score: 565.8 bits (1457), Expect = 3.300e-158 Identity = 278/329 (84.50%), Postives = 304/329 (92.40%), Query Frame = 1
BLAST of Spo09921.1 vs. UniProtKB/TrEMBL
Match: U5GX91_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s35600g PE=4 SV=1) HSP 1 Score: 522.7 bits (1345), Expect = 3.200e-145 Identity = 256/329 (77.81%), Postives = 287/329 (87.23%), Query Frame = 1
BLAST of Spo09921.1 vs. UniProtKB/TrEMBL
Match: A0A0D2N7W9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G103800 PE=4 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 3.000e-143 Identity = 252/329 (76.60%), Postives = 283/329 (86.02%), Query Frame = 1
BLAST of Spo09921.1 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1) HSP 1 Score: 652.5 bits (1682), Expect = 2.400e-186 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1
BLAST of Spo09921.1 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 1.100e-138 Identity = 245/329 (74.47%), Postives = 278/329 (84.50%), Query Frame = 1
BLAST of Spo09921.1 vs. ExPASy Swiss-Prot
Match: ENOX_SOLLC (2-methylene-furan-3-one reductase OS=Solanum lycopersicum GN=EO PE=1 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 6.000e-36 Identity = 124/340 (36.47%), Postives = 165/340 (48.53%), Query Frame = 1
BLAST of Spo09921.1 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=2 SV=2) HSP 1 Score: 149.4 bits (376), Expect = 6.700e-35 Identity = 121/350 (34.57%), Postives = 167/350 (47.71%), Query Frame = 1
BLAST of Spo09921.1 vs. ExPASy Swiss-Prot
Match: ENOXE_FRAAN (2-methylene-furan-3-one reductase OS=Fragaria ananassa GN=EO PE=1 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 8.700e-35 Identity = 113/330 (34.24%), Postives = 172/330 (52.12%), Query Frame = 1
BLAST of Spo09921.1 vs. TAIR (Arabidopsis)
Match: AT4G13010.1 (Oxidoreductase, zinc-binding dehydrogenase family protein) HSP 1 Score: 494.2 bits (1271), Expect = 6.200e-140 Identity = 245/329 (74.47%), Postives = 278/329 (84.50%), Query Frame = 1
BLAST of Spo09921.1 vs. TAIR (Arabidopsis)
Match: AT1G23740.1 (Oxidoreductase, zinc-binding dehydrogenase family protein) HSP 1 Score: 149.4 bits (376), Expect = 3.800e-36 Identity = 121/350 (34.57%), Postives = 167/350 (47.71%), Query Frame = 1
BLAST of Spo09921.1 vs. TAIR (Arabidopsis)
Match: AT3G15090.1 (GroES-like zinc-binding alcohol dehydrogenase family protein) HSP 1 Score: 110.5 bits (275), Expect = 1.900e-24 Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = 1
BLAST of Spo09921.1 vs. TAIR (Arabidopsis)
Match: AT4G21580.1 (oxidoreductase, zinc-binding dehydrogenase family protein) HSP 1 Score: 91.7 bits (226), Expect = 9.300e-19 Identity = 91/327 (27.83%), Postives = 144/327 (44.04%), Query Frame = 1
BLAST of Spo09921.1 vs. TAIR (Arabidopsis)
Match: AT1G49670.2 (ARP protein (REF)) HSP 1 Score: 75.1 bits (183), Expect = 9.000e-14 Identity = 89/326 (27.30%), Postives = 133/326 (40.80%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09921.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09921.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09921.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09921.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|