Spo09766 (gene) | SpinachBase

Overview


Name	Spo09766
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll A/B binding protein
Location	chr6 : 42550026 .. 42552442 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAACTTTAATTATTTTTCTGGTTTGTCAAAATTAATCTGTTGACAACCCAAAATCCAAATGCAAATATATGTGCAATGTGCAACACACAAATTTTCTTGGGCCCCACTTGGATGAAAAATTGTAGGATGTCCAATCATTCTCATAAAGGATAGATAAGGCCCAGCAATTTCCCATCCACATCCTTCCAAATGGACCAAATTCAACCAAAACCAACTATTATTCAACTGTCTACAATATTGCCACACTTCACCACACACTACCTTTTATTTTCTATACACCAAACATTTTAGCCTCAATATCACACACAACCATCTTACTCCCTAGCTAAACACCCCATCATGGCCACCGCCGCCCCCGCCACCGCCTCATACATCTTCGGAACCCGCATTACCGGCCCGAACCCGGGTTCAGGCAAGTTCACGGCGTTGTTTGGGTTCGGAAAGAAGGCGGCAAAGAAAGTAGCCCCAAAGAAGAAAATAATAGATGAGGATAGGCCCGTTTGGTACCCGGGTGCCAAAGCACCCGAGTGGCTAGACGGGACAATGGTTGGGGACCGTGGGTTCGACCCGTTTGGGCTGGCTAAGCCCGCCGAGTATTTGCAGTTTGACTATGATGGGCTGGATCAGAATCTTGCTAAGAATTTAGCTGGTGATATTATTGGGACTAGGACTGAAACTGCTGATATACAGCCCACACCATTTCAGCCTTATACAGAGGTGTTTGGGATTCAAAGGTTTAGGGAGTGTGAAGTGATCCATGGTAGGTGGGCCATGTTGGCTACACTTGGTGCTCTTTCTGTTGAGGCTTTTACTGGTGTTTCATGGCAAGATGCTGGAAAGGTATGTATCATCAATTCTCATTACTACTCCGTATATCATACAGTAGTTTAGAACATGACTTGAGATTGATTATAGTTAATTCTAATCCGATCAGGGAGTTTACACAATCTAACACGAAGAAGTAAAGAAATAAATAGATTGTTAACAAAAAAATGTACAAGTAATATAATACATAAAGATGCTGCATTGGTAAATCCGACCCCATTTCAGAATTCAGAATTCTACAACTCTAAGTTTCCTATGCCAATTTGATTATATACTACAGTAGTATATCCACTTGAATTGATTGATCTATCGAAATCCCAGTAATTGTTTCCTTGTATCATGATTTAGAAGTACATAAAAAGTAAAGTTTGGTTAGGTTCGGCCTCATAACCTAACGGTACTGGGATCAAATCCCACTAGAGGCCATTCGCAGGTTAGGATTTTGCTTATAATCACCCTCACTTTCCAATGAGTCTGATTTGCTGATAAATTCATTGAACCCATATACCGATATACGTGCCCGTACATAAGAAGAGATTGACCGTATAAAAGACTAACAAGATTCCATCCTAAAATCAATTGGTGATAGGTGGAGTAGTCCACCAACTTTTATGTTACTATGTTAGTCAATATATCTCTTTCTATTTTCTTCAATGTGGGATAACTAATTCAATATTCACATATAGATTTTCCTCTTAACACGTGCAAAACTGGCTAAAAATACACGTGTGAGGTATCAATCTAGTAAGGTCTTTCCTTTTAAACTTTAAAAAAAAAAAAAAATTGATTTAGAAGTACATCAAATACTGCATTCTACTCCCTCAGTCCACAAACAATAGTCCAACATAATATATAGATTAAGAGGGAGTACTAAATATACAAAAAAAATACTGAAAATGTTCATGCTCTTCTGAATTGTAAAAACACTAAATTCCAAACAACTAACATTGAACATTTTGCAGGTAGAATTGATTGAAGGAGCATCCTACCTAGGCCAAAAGCTACCATTCTCCCTAACCACATTGATCTGGATAGAAGTACTCCTAATAGGCTACATTGAGTTCCAAAGAAATGCAGAACTTGACCCGGAAATGCGCCTCTACCCGGGTGGGCAATACTTCGACCCGCTTGGCTTAGCTGCGGACCCTGAGAAGAAAGAAAGACTTCAGTTAGCAGAGATCAAGCATTCTCGCCTCGCCATGGTTGCTTTCCTTGGGTTTGCAATTCAAGCTGCTGCTACTGGAAAGGGCCCACTTAGCAATGTTGCTGCATTTTTGAGTGACCCTTCTAACAACATCCTCAAAACTTTCTCTTAAAAAGAATTTTACAGAGTTGTTGCCTCTTTTTTTTGTGGTTTTTCACCAACATAAATGATGATGATGATGTTGTTGTTAGTTATGAATTTCAGTTGTAATGCTTTGTATGTATATTTGTTGTTATACTTTGAGAAATAACAGTGTATTGTGTTATTATTGATCGTTTGATCTTATGTTTGCATTGAGATAAATCTAATGTACTCATATATATATATATATATATATACAAGTTATGTTACTAGCTACTTAGCTAGTATGGACTGTCATCAATTG

mRNA sequence

AAATAACTTTAATTATTTTTCTGGTTTGTCAAAATTAATCTGTTGACAACCCAAAATCCAAATGCAAATATATGTGCAATGTGCAACACACAAATTTTCTTGGGCCCCACTTGGATGAAAAATTGTAGGATGTCCAATCATTCTCATAAAGGATAGATAAGGCCCAGCAATTTCCCATCCACATCCTTCCAAATGGACCAAATTCAACCAAAACCAACTATTATTCAACTGTCTACAATATTGCCACACTTCACCACACACTACCTTTTATTTTCTATACACCAAACATTTTAGCCTCAATATCACACACAACCATCTTACTCCCTAGCTAAACACCCCATCATGGCCACCGCCGCCCCCGCCACCGCCTCATACATCTTCGGAACCCGCATTACCGGCCCGAACCCGGGTTCAGGCAAGTTCACGGCGTTGTTTGGGTTCGGAAAGAAGGCGGCAAAGAAAGTAGCCCCAAAGAAGAAAATAATAGATGAGGATAGGCCCGTTTGGTACCCGGGTGCCAAAGCACCCGAGTGGCTAGACGGGACAATGGTTGGGGACCGTGGGTTCGACCCGTTTGGGCTGGCTAAGCCCGCCGAGTATTTGCAGTTTGACTATGATGGGCTGGATCAGAATCTTGCTAAGAATTTAGCTGGTGATATTATTGGGACTAGGACTGAAACTGCTGATATACAGCCCACACCATTTCAGCCTTATACAGAGGTGTTTGGGATTCAAAGGTTTAGGGAGTGTGAAGTGATCCATGGTAGGTGGGCCATGTTGGCTACACTTGGTGCTCTTTCTGTTGAGGCTTTTACTGGTGTTTCATGGCAAGATGCTGGAAAGGTAGAATTGATTGAAGGAGCATCCTACCTAGGCCAAAAGCTACCATTCTCCCTAACCACATTGATCTGGATAGAAGTACTCCTAATAGGCTACATTGAGTTCCAAAGAAATGCAGAACTTGACCCGGAAATGCGCCTCTACCCGGGTGGGCAATACTTCGACCCGCTTGGCTTAGCTGCGGACCCTGAGAAGAAAGAAAGACTTCAGTTAGCAGAGATCAAGCATTCTCGCCTCGCCATGGTTGCTTTCCTTGGGTTTGCAATTCAAGCTGCTGCTACTGGAAAGGGCCCACTTAGCAATGTTGCTGCATTTTTGAGTGACCCTTCTAACAACATCCTCAAAACTTTCTCTTAAAAAGAATTTTACAGAGTTGTTGCCTCTTTTTTTTGTGGTTTTTCACCAACATAAATGATGATGATGATGTTGTTGTTAGTTATGAATTTCAGTTGTAATGCTTTGTATGTATATTTGTTGTTATACTTTGAGAAATAACAGTGTATTGTGTTATTATTGATCGTTTGATCTTATGTTTGCATTGAGATAAATCTAATGTACTCATATATATATATATATATATATACAAGTTATGTTACTAGCTACTTAGCTAGTATGGACTGTCATCAATTG

Coding sequence (CDS)

ATGGCCACCGCCGCCCCCGCCACCGCCTCATACATCTTCGGAACCCGCATTACCGGCCCGAACCCGGGTTCAGGCAAGTTCACGGCGTTGTTTGGGTTCGGAAAGAAGGCGGCAAAGAAAGTAGCCCCAAAGAAGAAAATAATAGATGAGGATAGGCCCGTTTGGTACCCGGGTGCCAAAGCACCCGAGTGGCTAGACGGGACAATGGTTGGGGACCGTGGGTTCGACCCGTTTGGGCTGGCTAAGCCCGCCGAGTATTTGCAGTTTGACTATGATGGGCTGGATCAGAATCTTGCTAAGAATTTAGCTGGTGATATTATTGGGACTAGGACTGAAACTGCTGATATACAGCCCACACCATTTCAGCCTTATACAGAGGTGTTTGGGATTCAAAGGTTTAGGGAGTGTGAAGTGATCCATGGTAGGTGGGCCATGTTGGCTACACTTGGTGCTCTTTCTGTTGAGGCTTTTACTGGTGTTTCATGGCAAGATGCTGGAAAGGTAGAATTGATTGAAGGAGCATCCTACCTAGGCCAAAAGCTACCATTCTCCCTAACCACATTGATCTGGATAGAAGTACTCCTAATAGGCTACATTGAGTTCCAAAGAAATGCAGAACTTGACCCGGAAATGCGCCTCTACCCGGGTGGGCAATACTTCGACCCGCTTGGCTTAGCTGCGGACCCTGAGAAGAAAGAAAGACTTCAGTTAGCAGAGATCAAGCATTCTCGCCTCGCCATGGTTGCTTTCCTTGGGTTTGCAATTCAAGCTGCTGCTACTGGAAAGGGCCCACTTAGCAATGTTGCTGCATTTTTGAGTGACCCTTCTAACAACATCCTCAAAACTTTCTCTTAA

Protein sequence

MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo09766.1	Spo09766.1	mRNA

Homology

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BLAST of Spo09766.1 vs. NCBI nr
Match: gi|902233504|gb|KNA23082.1| (hypothetical protein SOVF_028050 [Spinacia oleracea])

HSP 1 Score: 577.4 bits (1487), Expect = 1.400e-161
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1


		  
Query: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAK 60
           MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAK
Sbjct: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAK 60

Query: 61  APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP 120
           APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP
Sbjct: 61  APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP 120

Query: 121 FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK 180
           FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK
Sbjct: 121 FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK 180

Query: 181 LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI 240
           LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI 240

Query: 241 KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS 285
           KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS
Sbjct: 241 KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS 284

[Close]

BLAST of Spo09766.1 vs. NCBI nr
Match: gi|731332373|ref|XP_010677168.1| (PREDICTED: chlorophyll a-b binding protein CP29.3, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 518.8 bits (1335), Expect = 5.800e-144
Identity = 258/287 (89.90%), Postives = 266/287 (92.68%), Query Frame = 1


		  
Query: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAA--KKVAPKKKII-DEDRPVWYP 60
           MATAAPATASYIFGTRI GPNPG  KF ALFG GKKAA  KK APK+ ++ DEDR VW+P
Sbjct: 1   MATAAPATASYIFGTRIAGPNPGPAKFQALFGLGKKAAPAKKAAPKRPVVSDEDRLVWFP 60

Query: 61  GAKAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQ 120
           GA+ PEWLDG++VGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIG R ET DIQ
Sbjct: 61  GAQPPEWLDGSLVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGARIETEDIQ 120

Query: 121 PTPFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYL 180
           PTPFQPY EVFGIQRFRECEVIHGRWAMLATLGALSVEA TGVSWQDAGKVELIEGASYL
Sbjct: 121 PTPFQPYAEVFGIQRFRECEVIHGRWAMLATLGALSVEALTGVSWQDAGKVELIEGASYL 180

Query: 181 GQKLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQL 240
           GQKLPFSL TLIWIEVLL+GYIEFQRNAELDPE RLYPGGQYFDPLGLAADPEKK RLQL
Sbjct: 181 GQKLPFSLGTLIWIEVLLVGYIEFQRNAELDPEKRLYPGGQYFDPLGLAADPEKKLRLQL 240

Query: 241 AEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS 285
           AEIKHSRLAMVAFLGFAIQAAATGKGPLSNVA FLSDPSNNILKTFS
Sbjct: 241 AEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAEFLSDPSNNILKTFS 287

[Close]

BLAST of Spo09766.1 vs. NCBI nr
Match: gi|694405889|ref|XP_009377780.1| (PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 441.8 bits (1135), Expect = 9.000e-121
Identity = 219/284 (77.11%), Postives = 240/284 (84.51%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRI-TGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKA 62
           TAA A AS   GTR+ T     SG+  A FGFG K  KK  P       DRP+WYPGAKA
Sbjct: 5   TAAAAAASSFIGTRLPTDAYSNSGRVQARFGFGAKKPKKTKPT---FSTDRPLWYPGAKA 64

Query: 63  PEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPF 122
           PEWLDG++VGD GFDPFGL KPAEYLQ+DYDGLDQNLAKNLAGDIIGTRTETAD+Q TPF
Sbjct: 65  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTETADVQSTPF 124

Query: 123 QPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKL 182
           QPYTEVFG+QRFRECE+IHGRWAMLATLGAL+VE+ TG++WQDAGKVELIEG+SYLGQ L
Sbjct: 125 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVESLTGITWQDAGKVELIEGSSYLGQPL 184

Query: 183 PFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIK 242
           PFSLTTLIWIEVL+IGYIEFQRNAELDPE RLYPGG++FDPLGLAADPEKK  LQLAEIK
Sbjct: 185 PFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIK 244

Query: 243 HSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           H+RLAMVAFLGFA+QAA TGKGPL+N A  LSDP    I+  FS
Sbjct: 245 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDAFS 285

[Close]

BLAST of Spo09766.1 vs. NCBI nr
Match: gi|20260162|gb|AAM12979.1| (chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana])

HSP 1 Score: 440.7 bits (1132), Expect = 2.000e-120
Identity = 216/284 (76.06%), Postives = 244/284 (85.92%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRIT-GPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKA 62
           +AA A AS I GTR+  G +PGSG+FTA+FGFGKK A      KK +  DRPVWYPGA +
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPVWYPGAIS 64

Query: 63  PEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPF 122
           P+WLDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNLAGD+IGTRTE AD + TPF
Sbjct: 65  PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124

Query: 123 QPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKL 182
           QPY+EVFGIQRFRECE+IHGRWAMLATLGALSVE  TGV+WQDAGKVEL++G+SYLGQ L
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184

Query: 183 PFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIK 242
           PFS++TLIWIEVL+IGYIEFQRNAELD E RLYPGG++FDPLGLAADPEK  +LQLAEIK
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244

Query: 243 HSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           H+RLAMVAFLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288

[Close]

BLAST of Spo09766.1 vs. NCBI nr
Match: gi|297810243|ref|XP_002873005.1| (chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 440.3 bits (1131), Expect = 2.600e-120
Identity = 217/285 (76.14%), Postives = 246/285 (86.32%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRIT-GPNPGSGKFTALFGFGKK-AAKKVAPKKKIIDEDRPVWYPGAK 62
           +AA A AS I GTR+  G +PGS +FTALF FGKK AA K +  KK +  DRP+WYPGA 
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSSRFTALFSFGKKKAAPKKSASKKTVTTDRPLWYPGAI 64

Query: 63  APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP 122
           +PEWLDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNLAGD+IGTRTE AD + TP
Sbjct: 65  SPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTP 124

Query: 123 FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK 182
           FQPY+EVFGIQRFRECE+IHGRWAMLATLGALSVE  TGV+WQDAGKVEL++G+SYLGQ 
Sbjct: 125 FQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQP 184

Query: 183 LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI 242
           LPFS++TLIWIEVL++GYIEFQRNAELD E RLYPGG+YFDPLGLAADPEK+ +LQLAEI
Sbjct: 185 LPFSISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKYFDPLGLAADPEKRAQLQLAEI 244

Query: 243 KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           KH+RLAMVAFLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 245 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 289

[Close]

BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW58_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_028050 PE=3 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 9.500e-162
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1


		  
Query: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAK 60
           MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAK
Sbjct: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAK 60

Query: 61  APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP 120
           APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP
Sbjct: 61  APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP 120

Query: 121 FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK 180
           FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK
Sbjct: 121 FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK 180

Query: 181 LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI 240
           LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI 240

Query: 241 KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS 285
           KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS
Sbjct: 241 KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS 284

[Close]

BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEA0_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105530 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 4.000e-144
Identity = 258/287 (89.90%), Postives = 266/287 (92.68%), Query Frame = 1


		  
Query: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAA--KKVAPKKKII-DEDRPVWYP 60
           MATAAPATASYIFGTRI GPNPG  KF ALFG GKKAA  KK APK+ ++ DEDR VW+P
Sbjct: 1   MATAAPATASYIFGTRIAGPNPGPAKFQALFGLGKKAAPAKKAAPKRPVVSDEDRLVWFP 60

Query: 61  GAKAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQ 120
           GA+ PEWLDG++VGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIG R ET DIQ
Sbjct: 61  GAQPPEWLDGSLVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGARIETEDIQ 120

Query: 121 PTPFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYL 180
           PTPFQPY EVFGIQRFRECEVIHGRWAMLATLGALSVEA TGVSWQDAGKVELIEGASYL
Sbjct: 121 PTPFQPYAEVFGIQRFRECEVIHGRWAMLATLGALSVEALTGVSWQDAGKVELIEGASYL 180

Query: 181 GQKLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQL 240
           GQKLPFSL TLIWIEVLL+GYIEFQRNAELDPE RLYPGGQYFDPLGLAADPEKK RLQL
Sbjct: 181 GQKLPFSLGTLIWIEVLLVGYIEFQRNAELDPEKRLYPGGQYFDPLGLAADPEKKLRLQL 240

Query: 241 AEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNNILKTFS 285
           AEIKHSRLAMVAFLGFAIQAAATGKGPLSNVA FLSDPSNNILKTFS
Sbjct: 241 AEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAEFLSDPSNNILKTFS 287

[Close]

BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
Match: D7M6I1_ARALL (Chlorophyll a-b binding protein, chloroplastic OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486922 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.800e-120
Identity = 217/285 (76.14%), Postives = 246/285 (86.32%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRIT-GPNPGSGKFTALFGFGKK-AAKKVAPKKKIIDEDRPVWYPGAK 62
           +AA A AS I GTR+  G +PGS +FTALF FGKK AA K +  KK +  DRP+WYPGA 
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSSRFTALFSFGKKKAAPKKSASKKTVTTDRPLWYPGAI 64

Query: 63  APEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTP 122
           +PEWLDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNLAGD+IGTRTE AD + TP
Sbjct: 65  SPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTP 124

Query: 123 FQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQK 182
           FQPY+EVFGIQRFRECE+IHGRWAMLATLGALSVE  TGV+WQDAGKVEL++G+SYLGQ 
Sbjct: 125 FQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQP 184

Query: 183 LPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEI 242
           LPFS++TLIWIEVL++GYIEFQRNAELD E RLYPGG+YFDPLGLAADPEK+ +LQLAEI
Sbjct: 185 LPFSISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKYFDPLGLAADPEKRAQLQLAEI 244

Query: 243 KHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           KH+RLAMVAFLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 245 KHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 289

[Close]

BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
Match: W8SNL2_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Pyrus x bretschneideri PE=2 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.800e-120
Identity = 218/284 (76.76%), Postives = 239/284 (84.15%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRI-TGPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKA 62
           TAA A AS   GTR+ T     SG+  A FGFG K  KK  P       DRP+WYPGAKA
Sbjct: 5   TAAAAAASSFIGTRLPTDAYSNSGRVQARFGFGAKKPKKTKPT---FSTDRPLWYPGAKA 64

Query: 63  PEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPF 122
           PEWLDG++VGD GFDPFGL KPAEYLQ+DYDGLDQNLAKNLAGDIIGTRTETAD+Q TPF
Sbjct: 65  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTETADVQSTPF 124

Query: 123 QPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKL 182
           QPYTEVFG+QRFRECE+IHGRWAMLATLGAL+VE+ TG++WQDAGKVELIEG+SYLGQ L
Sbjct: 125 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVESLTGITWQDAGKVELIEGSSYLGQPL 184

Query: 183 PFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIK 242
           PFSLTTLIWIEVL+IGYIEFQRNAELDPE RLYPGG++FDPLGLAADPEKK  LQLAEIK
Sbjct: 185 PFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIK 244

Query: 243 HSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           H+RLAMV FLGFA+QAA TGKGPL+N A  LSDP    I+  FS
Sbjct: 245 HARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDAFS 285

[Close]

BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
Match: Q0WW97_ARATH (Chlorophyll a-b binding protein, chloroplastic OS=Arabidopsis thaliana GN=At5g01530 PE=2 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 3.100e-120
Identity = 215/284 (75.70%), Postives = 244/284 (85.92%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRIT-GPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKA 62
           +AA A AS I GTR+  G +PGSG+FTA+FGFGKK A      KK +  DRP+WYPGA +
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAIS 64

Query: 63  PEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPF 122
           P+WLDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNLAGD+IGTRTE AD + TPF
Sbjct: 65  PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124

Query: 123 QPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKL 182
           QPY+EVFGIQRFRECE+IHGRWAMLATLGALSVE  TGV+WQDAGKVEL++G+SYLGQ L
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184

Query: 183 PFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIK 242
           PFS++TLIWIEVL+IGYIEFQRNAELD E RLYPGG++FDPLGLAADPEK  +LQLAEIK
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244

Query: 243 HSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           H+RLAMVAFLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288

[Close]

BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 2.800e-122
Identity = 215/284 (75.70%), Postives = 244/284 (85.92%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRIT-GPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKA 62
           +AA A AS I GTR+  G +PGSG+FTA+FGFGKK A      KK +  DRP+WYPGA +
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAIS 64

Query: 63  PEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPF 122
           P+WLDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNLAGD+IGTRTE AD + TPF
Sbjct: 65  PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124

Query: 123 QPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKL 182
           QPY+EVFGIQRFRECE+IHGRWAMLATLGALSVE  TGV+WQDAGKVEL++G+SYLGQ L
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184

Query: 183 PFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIK 242
           PFS++TLIWIEVL+IGYIEFQRNAELD E RLYPGG++FDPLGLAADPEK  +LQLAEIK
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244

Query: 243 HSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           H+RLAMVAFLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288

[Close]

BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.800e-114
Identity = 204/286 (71.33%), Postives = 239/286 (83.57%), Query Frame = 1


		  
Query: 2   ATAAPATASYIFGTRITGP-NPGSGKFTALFGFGKKAAKKVAPKK-KIIDEDRPVWYPGA 61
           AT+  A AS I GTR+    +  S +FTA FGFG    KK +PKK K +  DRP+W+PGA
Sbjct: 3   ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFG---TKKASPKKAKTVISDRPLWFPGA 62

Query: 62  KAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPT 121
           K+PE+LDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNL G++IGTRTE  D + T
Sbjct: 63  KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKST 122

Query: 122 PFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQ 181
           PFQPY+EVFG+QRFRECE+IHGRWAMLATLGA++VE  TGV+WQDAGKVEL++G+SYLGQ
Sbjct: 123 PFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQ 182

Query: 182 KLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAE 241
            LPFS++TLIWIEVL+IGYIEFQRNAELD E RLYPGG++FDPLGLA+DP KK +LQLAE
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAE 242

Query: 242 IKHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           IKH+RLAMV FLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 243 IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285

[Close]

BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.100e-113
Identity = 201/275 (73.09%), Postives = 229/275 (83.27%), Query Frame = 1


		  
Query: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKII----DEDRPVWY 60
           MAT   A AS IFG RI  P PG+G+  A FGF     K   P KK      D DR VW+
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWF 60

Query: 61  PGAKAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADI 120
           PGA  PEWLDG+M+GDRGFDPFGL KPAEYLQ+D+DGLDQNLAKN+AGDIIG   E+++I
Sbjct: 61  PGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEI 120

Query: 121 QPTPFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASY 180
           +PTPFQPYTEVFGIQRFRECE+IHGRWAML TLGA++VEA TG++WQDAGKVEL+EG+SY
Sbjct: 121 KPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSY 180

Query: 181 LGQKLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQ 240
           LGQ LPFSLTTLIWIEVL++GYIEFQRN+ELDPE R+YPGG YFDPLGLAADPEK + L+
Sbjct: 181 LGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLK 240

Query: 241 LAEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAAF 272
           LAEIKHSRLAMVAFL FA+QAA TGKGP+S +A F
Sbjct: 241 LAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLATF 274

[Close]

BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 254.2 bits (648), Expect = 1.700e-66
Identity = 131/228 (57.46%), Postives = 161/228 (70.61%), Query Frame = 1


		  
Query: 54  VWYPGAKAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTET 113
           +W P    PEWLDG++ GDRGFDP GL+KP+E++    D  DQN AKN  G +      T
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQAT 111

Query: 114 AD--IQPTPFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELI 173
            D         PY+EVFG+ RFRECE+IHGRWAMLA LGAL  EA TGVSW +AGKVEL 
Sbjct: 112 PDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL- 171

Query: 174 EGASYLGQKLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAA-DPE 233
           +GASY G  LPFS+T LIWIEV+L+G  EF RN+E +PE R YPGG  FDPL LA+ D E
Sbjct: 172 DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEE 231

Query: 234 KKERLQLAEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDPSNN 279
           +  RL+ AEIKH+RLAMV+F G+ +QA +TG+G L ++A F +D  NN
Sbjct: 232 RAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKF-ADGLNN 276

[Close]

BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
Match: CAB6_ARATH (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.200e-29
Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 1


		  
Query: 130 IQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEG--ASYLGQKLPF-SLT 189
           ++R++E E+IH RWAMLA  G L  EA    +W  A +   + G  A+YLG  +P+ +L 
Sbjct: 80  LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139

Query: 190 TLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIKHSRLA 249
           T++ IE L I ++E QR+ E DPE + YPGG  FDPLG + DP+K E L++ EIK+ RLA
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLA 199

Query: 250 MVAFLGFAIQAAA-TGKGPLSNVAAFLSDPSNN 279
           ++AF+GF +Q +A  G GPL N+A  L+DP +N
Sbjct: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 231

[Close]

BLAST of Spo09766.1 vs. TAIR (Arabidopsis)
Match: AT5G01530.1 (light harvesting complex photosystem II)

HSP 1 Score: 439.5 bits (1129), Expect = 1.600e-123
Identity = 215/284 (75.70%), Postives = 244/284 (85.92%), Query Frame = 1


		  
Query: 3   TAAPATASYIFGTRIT-GPNPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKA 62
           +AA A AS I GTR+  G +PGSG+FTA+FGFGKK A      KK +  DRP+WYPGA +
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAIS 64

Query: 63  PEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPF 122
           P+WLDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNLAGD+IGTRTE AD + TPF
Sbjct: 65  PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124

Query: 123 QPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQKL 182
           QPY+EVFGIQRFRECE+IHGRWAMLATLGALSVE  TGV+WQDAGKVEL++G+SYLGQ L
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184

Query: 183 PFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIK 242
           PFS++TLIWIEVL+IGYIEFQRNAELD E RLYPGG++FDPLGLAADPEK  +LQLAEIK
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244

Query: 243 HSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           H+RLAMVAFLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288

[Close]

BLAST of Spo09766.1 vs. TAIR (Arabidopsis)
Match: AT3G08940.2 (light harvesting complex photosystem II)

HSP 1 Score: 412.9 bits (1060), Expect = 1.600e-115
Identity = 204/286 (71.33%), Postives = 239/286 (83.57%), Query Frame = 1


		  
Query: 2   ATAAPATASYIFGTRITGP-NPGSGKFTALFGFGKKAAKKVAPKK-KIIDEDRPVWYPGA 61
           AT+  A AS I GTR+    +  S +FTA FGFG    KK +PKK K +  DRP+W+PGA
Sbjct: 3   ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFG---TKKASPKKAKTVISDRPLWFPGA 62

Query: 62  KAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPT 121
           K+PE+LDG++VGD GFDPFGL KPAEYLQFD D LDQNLAKNL G++IGTRTE  D + T
Sbjct: 63  KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKST 122

Query: 122 PFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASYLGQ 181
           PFQPY+EVFG+QRFRECE+IHGRWAMLATLGA++VE  TGV+WQDAGKVEL++G+SYLGQ
Sbjct: 123 PFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQ 182

Query: 182 KLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAE 241
            LPFS++TLIWIEVL+IGYIEFQRNAELD E RLYPGG++FDPLGLA+DP KK +LQLAE
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAE 242

Query: 242 IKHSRLAMVAFLGFAIQAAATGKGPLSNVAAFLSDP-SNNILKTFS 285
           IKH+RLAMV FLGFA+QAAATGKGPL+N A  LSDP    I+ TFS
Sbjct: 243 IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285

[Close]

BLAST of Spo09766.1 vs. TAIR (Arabidopsis)
Match: AT2G40100.1 (light harvesting complex photosystem II)

HSP 1 Score: 411.0 bits (1055), Expect = 6.000e-115
Identity = 201/275 (73.09%), Postives = 229/275 (83.27%), Query Frame = 1


		  
Query: 1   MATAAPATASYIFGTRITGPNPGSGKFTALFGFGKKAAKKVAPKKKII----DEDRPVWY 60
           MAT   A AS IFG RI  P PG+G+  A FGF     K   P KK      D DR VW+
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWF 60

Query: 61  PGAKAPEWLDGTMVGDRGFDPFGLAKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADI 120
           PGA  PEWLDG+M+GDRGFDPFGL KPAEYLQ+D+DGLDQNLAKN+AGDIIG   E+++I
Sbjct: 61  PGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEI 120

Query: 121 QPTPFQPYTEVFGIQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEGASY 180
           +PTPFQPYTEVFGIQRFRECE+IHGRWAML TLGA++VEA TG++WQDAGKVEL+EG+SY
Sbjct: 121 KPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSY 180

Query: 181 LGQKLPFSLTTLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQ 240
           LGQ LPFSLTTLIWIEVL++GYIEFQRN+ELDPE R+YPGG YFDPLGLAADPEK + L+
Sbjct: 181 LGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLK 240

Query: 241 LAEIKHSRLAMVAFLGFAIQAAATGKGPLSNVAAF 272
           LAEIKHSRLAMVAFL FA+QAA TGKGP+S +A F
Sbjct: 241 LAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLATF 274

[Close]

BLAST of Spo09766.1 vs. TAIR (Arabidopsis)
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1)

HSP 1 Score: 131.7 bits (330), Expect = 7.000e-31
Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 1


		  
Query: 130 IQRFRECEVIHGRWAMLATLGALSVEAFTGVSWQDAGKVELIEG--ASYLGQKLPF-SLT 189
           ++R++E E+IH RWAMLA  G L  EA    +W  A +   + G  A+YLG  +P+ +L 
Sbjct: 80  LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLP 139

Query: 190 TLIWIEVLLIGYIEFQRNAELDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIKHSRLA 249
           T++ IE L I ++E QR+ E DPE + YPGG  FDPLG + DP+K E L++ EIK+ RLA
Sbjct: 140 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLA 199

Query: 250 MVAFLGFAIQAAA-TGKGPLSNVAAFLSDPSNN 279
           ++AF+GF +Q +A  G GPL N+A  L+DP +N
Sbjct: 200 LLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 231

[Close]

BLAST of Spo09766.1 vs. TAIR (Arabidopsis)
Match: AT4G10340.1 (light harvesting complex of photosystem II 5)

HSP 1 Score: 115.9 bits (289), Expect = 4.000e-26
Identity = 94/273 (34.43%), Postives = 129/273 (47.25%), Query Frame = 1


		  
Query: 21  NPGSGKFTALFGFGKKAAKKVAPKKKIIDEDRPVWYPGAKAPEWLDGTMVGDRGFDPFGL 80
           +P + K  ALF   K A  K     +  DE    WY   +            R F P GL
Sbjct: 29  SPSTFKTVALFSKKKPAPAKSKAVSETSDE-LAKWYGPDR------------RIFLPDGL 88

Query: 81  AKPAEYLQFDYDGLDQNLAKNLAGDIIGTRTETADIQPTPFQPYTEVFGIQRFRECEVIH 140
              +E  ++            L G++ G      D    PF    +     +++  E+IH
Sbjct: 89  LDRSEIPEY------------LNGEVAG------DYGYDPFGLGKKPENFAKYQAFELIH 148

Query: 141 GRWAMLATLGALSVEAFTGVS--------WQDAGKVELIEG--ASYLGQKLPFSLTTLIW 200
            RWAML   G +  EA             W   G + L++G   +Y G+ +P +L   + 
Sbjct: 149 ARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVV 208

Query: 201 IEVLLIGYIEFQRNAE-LDPEMRLYPGGQYFDPLGLAADPEKKERLQLAEIKHSRLAMVA 260
            EV+L+G  E+ R    LD E +L+PGG  FDPLGLA DPE+   L++ EIK+ RLAM A
Sbjct: 209 AEVVLLGGAEYYRITNGLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFA 268

Query: 261 FLGFAIQAAATGKGPLSNVAAFLSDPSNNILKT 283
            LGF IQA  TG+GP+ N+A  LSDP  N L T
Sbjct: 269 MLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268

The following BLAST results are available for this feature:

BLAST of Spo09766.1 vs. NCBI nr
BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
BLAST of Spo09766.1 vs. TAIR (Arabidopsis)

BLAST of Spo09766.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233504\|gb\|KNA23082.1\|	1.4e-161	100.	hypothetical protein SOVF_0280...	[more]
gi\|731332373\|ref\|XP_010677168.1\|	5.8e-144	89.9	PREDICTED: chlorophyll a-b bin...	[more]
gi\|694405889\|ref\|XP_009377780.1\|	9.0e-121	77.1	PREDICTED: chlorophyll a-b bin...	[more]
gi\|20260162\|gb\|AAM12979.1\|	2.0e-120	76.0	chlorophyll a/b-binding protei...	[more]
gi\|297810243\|ref\|XP_002873005.1\|	2.6e-120	76.1	chlorophyll a/b-binding protei...	[more]

BLAST of Spo09766.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RW58_SPIOL	9.5e-162	100.	Chlorophyll a-b binding protei...	[more]
A0A0J8CEA0_BETVU	4.0e-144	89.9	Chlorophyll a-b binding protei...	[more]
D7M6I1_ARALL	1.8e-120	76.1	Chlorophyll a-b binding protei...	[more]
W8SNL2_9ROSA	1.8e-120	76.7	Chlorophyll a-b binding protei...	[more]
Q0WW97_ARATH	3.1e-120	75.7	Chlorophyll a-b binding protei...	[more]

BLAST of Spo09766.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CB4A_ARATH	2.8e-122	75.7	Chlorophyll a-b binding protei...	[more]
CB4B_ARATH	2.8e-114	71.3	Chlorophyll a-b binding protei...	[more]
CB4C_ARATH	1.1e-113	73.0	Chlorophyll a-b binding protei...	[more]
CB29_CHLRE	1.7e-66	57.4	Chlorophyll a-b binding protei...	[more]
CAB6_ARATH	1.2e-29	47.0	Chlorophyll a-b binding protei...	[more]

BLAST of Spo09766.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G01530.1	1.6e-123	75.7	light harvesting complex photo...	[more]
AT3G08940.2	1.6e-115	71.3	light harvesting complex photo...	[more]
AT2G40100.1	6.0e-115	73.0	light harvesting complex photo...	[more]
AT3G54890.1	7.0e-31	47.0	photosystem I light harvesting...	[more]
AT4G10340.1	4.0e-26	34.4	light harvesting complex of ph...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..85 score: 3.2E-148coord: 125..275 score: 3.2E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 61..257 score: 8.1
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 53..85 score: 2.9E-68coord: 129..279 score: 2.9
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 129..281 score: 6.15E-52coord: 51..85 score: 6.15
None	No IPR available	PANTHER	PTHR21649:SF6	CHLOROPHYLL A-B BINDING PROTEIN CP29.1, CHLOROPLASTIC-RELATED	coord: 1..85 score: 3.2E-148coord: 125..275 score: 3.2E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0050787	detoxification of mercury ion
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0019344	cysteine biosynthetic process
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009517	PSII associated light-harvesting complex II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009783	photosystem II antenna complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0045340	mercury ion binding
molecular_function	GO:0016152	mercury (II) reductase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004148	dihydrolipoyl dehydrogenase activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0050661	NADP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21430	0.76	Barchart \| Table
Spo20701	0.68	Barchart \| Table
Spo21495	0.67	Barchart \| Table
Spo25118	0.67	Barchart \| Table
Spo03879	0.66	Barchart \| Table
Spo01898	0.66	Barchart \| Table
Spo01700	0.65	Barchart \| Table