Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACAATTTCTCTCCCCTCCTTTTTTATTTCTTTTTTTTTATTTAAAATTTTTCCATTTTTTCTTCTTCTCTTTCCACCAAACCCCTCTTTATAACCTCCCCTCATTTCTCCCCACTCTCTTCTCCCTTAACCCATTCACCCTCTCTTTCTCTCTCCTCAAAGTTTTGCTCTGTCTCCAGAAAAACTCCATTAAAATGGAATCATCTGCAACATCATCTATCAGAAGGCCTTGTTTCCGCGGCGGAGAAGACGACGGTTTAGCTTCAATCGCTGGTTTTTCCGGTAACAACCACCCTAATACTACCAACAATAACAACCACGGATATCCCGTAAATCATCATCAGAATCAGCCTTTTACGTGCTACAACGGCGACGGCGGTGGTGGTATTATGATGAGAAGAAGGAATAGTCTTAGAAATATAACTTCTCTTTCCCCTGTTTCTTCTCCTACTAGATCCGTATCCGCTCGCCTGTTTGATGCTAGATTTGAAGAGCTCCATTCTCCTCATTTCCTCGAATCATGCCATCTTTGCAAGAAGCCTCTCGGCGGTAACCGCGATATCTTCATGTACAGGTCAGTCACTTTTCCAGATCTACTTTACAACCTATATTCCGCATTTTTTGGTGTTTTTAATTTTTTTTTTTTTTTTTTTTCTTTTTATGATTATTGATTTGTTTTGGGATTGATGAATTTACAGAGGGGATACGCCGTTCTGCAGTGAAGAGTGTAGGCAAGAACAGATTGATATTGACGAATCCAAGGAGAAGAACAGAAAAATGAAGGCGTTAAGAAGCAAGAAAGAAGCAAATAAATCAAGTTCTGCTAATTCATCATCTTCCCCTAGTAAAACCCCAAGCTACCCTTTTCGGACCGGAACTGTCGTCGCTGCGTAAACTTCACTACTTACAATAACAGCGAAAAAAAATAAGGGAAAAAAGATCCAAATTTCCCCAATTAAAGACTTCAATTGGGGAAAAAGAAGAAAAAAGTGTTACATAAATATAAAGGAATTAGGGGTTTTTGTTTACTGATGATGATCTTGGAAGATCTATTTTGGGGAGAAGTTTGTGAAATTGTGGATTGACTTTGTTGATTTACAGTCAAAGGAGAAAGAAAGAGAGGAAAACAGAGCTCATGAGAGTGTTATGCAACAAGAAGAAGAAGAAATCGCAGGGATGTGCATATGATGATGGATGGGTTTATTTTAGATGGGAAATTACTCTATGAATGGCTCTTTTTTTTTGTTTTTGTGAAGTAATCCCAATAAAATGGGTTTGGAAAAAAAAAAAAAATAATAATTTTTGGGGGTCTTAGTAGNTAATCCCAATAAAATGGGTTTGGAAAAAAAAAAAAAATAATAATTTTTGGGGGTCTTAGTAGTTGTAATTTTTATCTAGTTTTTGATAATAGTATATGAAATCAGATGTTAATGTTTACCACTTTTACTAAATTAATTAATGGAGATGAGATGCAGATGGAAAAAACTTGTTCTTGTTTGCAGTATTTTTCTTGTCCTTATTATCTGGTTATAAACTTATAATGGTATTAGCACTTGACAAAGAAAGGTTCATTAATGGAGAAAATTGACAGATTCTTCAACTTTTAAGAAGAAATGATTAAAAAATTGTGGGTTTGAGAACTGGAAAATTTGGTTCTGGGGAGTGTGGTTTACTGTAAATTTGATTCTCTGTTGATTTCCAGCAAAGGAAATATTTGGGAG TACAATTTCTCTCCCCTCCTTTTTTATTTCTTTTTTTTTATTTAAAATTTTTCCATTTTTTCTTCTTCTCTTTCCACCAAACCCCTCTTTATAACCTCCCCTCATTTCTCCCCACTCTCTTCTCCCTTAACCCATTCACCCTCTCTTTCTCTCTCCTCAAAGTTTTGCTCTGTCTCCAGAAAAACTCCATTAAAATGGAATCATCTGCAACATCATCTATCAGAAGGCCTTGTTTCCGCGGCGGAGAAGACGACGGTTTAGCTTCAATCGCTGGTTTTTCCGGTAACAACCACCCTAATACTACCAACAATAACAACCACGGATATCCCGTAAATCATCATCAGAATCAGCCTTTTACGTGCTACAACGGCGACGGCGGTGGTGGTATTATGATGAGAAGAAGGAATAGTCTTAGAAATATAACTTCTCTTTCCCCTGTTTCTTCTCCTACTAGATCCGTATCCGCTCGCCTGTTTGATGCTAGATTTGAAGAGCTCCATTCTCCTCATTTCCTCGAATCATGCCATCTTTGCAAGAAGCCTCTCGGCGGTAACCGCGATATCTTCATGTACAGAGGGGATACGCCGTTCTGCAGTGAAGAGTGTAGGCAAGAACAGATTGATATTGACGAATCCAAGGAGAAGAACAGAAAAATGAAGGCGTTAAGAAGCAAGAAAGAAGCAAATAAATCAAGTTCTGCTAATTCATCATCTTCCCCTAGTAAAACCCCAAGCTACCCTTTTCGGACCGGAACTGTCGTCGCTGCGTAAACTTCACTACTTACAATAACAGCGAAAAAAAATAAGGGAAAAAAGATCCAAATTTCCCCAATTAAAGACTTCAATTGGGGAAAAAGAAGAAAAAAGTGTTACATAAATATAAAGGAATTAGGGGTTTTTGTTTACTGATGATGATCTTGGAAGATCTATTTTGGGGAGAAGTTTGTGAAATTGTGGATTGACTTTGTTGATTTACAGTCAAAGGAGAAAGAAAGAGAGGAAAACAGAGCTCATGAGAGTGTTATGCAACAAGAAGAAGAAGAAATCGCAGGGATGTGCATATGATGATGGATGGGTTTATTTTAGATGGGAAATTACTCTATGAATGGCTCTTTTTTTTTGTTTTTGTGAAGTAATCCCAATAAAATGGGTTTGGAAAAAAAAAAAAAATAATAATTTTTGGGGGTCTTAGTAGNTAATCCCAATAAAATGGGTTTGGAAAAAAAAAAAAAATAATAATTTTTGGGGGTCTTAGTAGTTGTAATTTTTATCTAGTTTTTGATAATAGTATATGAAATCAGATGTTAATGTTTACCACTTTTACTAAATTAATTAATGGAGATGAGATGCAGATGGAAAAAACTTGTTCTTGTTTGCAGTATTTTTCTTGTCCTTATTATCTGGTTATAAACTTATAATGGTATTAGCACTTGACAAAGAAAGGTTCATTAATGGAGAAAATTGACAGATTCTTCAACTTTTAAGAAGAAATGATTAAAAAATTGTGGGTTTGAGAACTGGAAAATTTGGTTCTGGGGAGTGTGGTTTACTGTAAATTTGATTCTCTGTTGATTTCCAGCAAAGGAAATATTTGGGAG ATGGAATCATCTGCAACATCATCTATCAGAAGGCCTTGTTTCCGCGGCGGAGAAGACGACGGTTTAGCTTCAATCGCTGGTTTTTCCGGTAACAACCACCCTAATACTACCAACAATAACAACCACGGATATCCCGTAAATCATCATCAGAATCAGCCTTTTACGTGCTACAACGGCGACGGCGGTGGTGGTATTATGATGAGAAGAAGGAATAGTCTTAGAAATATAACTTCTCTTTCCCCTGTTTCTTCTCCTACTAGATCCGTATCCGCTCGCCTGTTTGATGCTAGATTTGAAGAGCTCCATTCTCCTCATTTCCTCGAATCATGCCATCTTTGCAAGAAGCCTCTCGGCGGTAACCGCGATATCTTCATGTACAGAGGGGATACGCCGTTCTGCAGTGAAGAGTGTAGGCAAGAACAGATTGATATTGACGAATCCAAGGAGAAGAACAGAAAAATGAAGGCGTTAAGAAGCAAGAAAGAAGCAAATAAATCAAGTTCTGCTAATTCATCATCTTCCCCTAGTAAAACCCCAAGCTACCCTTTTCGGACCGGAACTGTCGTCGCTGCGTAA MESSATSSIRRPCFRGGEDDGLASIAGFSGNNHPNTTNNNNHGYPVNHHQNQPFTCYNGDGGGGIMMRRRNSLRNITSLSPVSSPTRSVSARLFDARFEELHSPHFLESCHLCKKPLGGNRDIFMYRGDTPFCSEECRQEQIDIDESKEKNRKMKALRSKKEANKSSSANSSSSPSKTPSYPFRTGTVVAA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09717.1 vs. NCBI nr
Match: gi|902175555|gb|KNA08617.1| (hypothetical protein SOVF_160990 [Spinacia oleracea]) HSP 1 Score: 374.8 bits (961), Expect = 9.100e-101 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 1
BLAST of Spo09717.1 vs. NCBI nr
Match: gi|731332425|ref|XP_010677199.1| (PREDICTED: M-phase inducer phosphatase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 268.5 bits (685), Expect = 9.200e-69 Identity = 149/196 (76.02%), Postives = 163/196 (83.16%), Query Frame = 1
BLAST of Spo09717.1 vs. NCBI nr
Match: gi|728814253|gb|KHG01478.1| (hypothetical protein F383_22703 [Gossypium arboreum]) HSP 1 Score: 161.0 bits (406), Expect = 2.100e-36 Identity = 103/195 (52.82%), Postives = 123/195 (63.08%), Query Frame = 1
BLAST of Spo09717.1 vs. NCBI nr
Match: gi|823144579|ref|XP_012472114.1| (PREDICTED: uncharacterized protein LOC105789323 [Gossypium raimondii]) HSP 1 Score: 160.6 bits (405), Expect = 2.700e-36 Identity = 102/196 (52.04%), Postives = 122/196 (62.24%), Query Frame = 1
BLAST of Spo09717.1 vs. NCBI nr
Match: gi|590676039|ref|XP_007039622.1| (Uncharacterized protein TCM_015808 [Theobroma cacao]) HSP 1 Score: 155.2 bits (391), Expect = 1.100e-34 Identity = 101/195 (51.79%), Postives = 124/195 (63.59%), Query Frame = 1
BLAST of Spo09717.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN04_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160990 PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 6.300e-101 Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 1
BLAST of Spo09717.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CI15_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105590 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 6.400e-69 Identity = 149/196 (76.02%), Postives = 163/196 (83.16%), Query Frame = 1
BLAST of Spo09717.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MH50_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22703 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.400e-36 Identity = 103/195 (52.82%), Postives = 123/195 (63.08%), Query Frame = 1
BLAST of Spo09717.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RPL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G179300 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.900e-36 Identity = 102/196 (52.04%), Postives = 122/196 (62.24%), Query Frame = 1
BLAST of Spo09717.1 vs. UniProtKB/TrEMBL
Match: A0A061G3Z1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015808 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 7.900e-35 Identity = 101/195 (51.79%), Postives = 124/195 (63.59%), Query Frame = 1
BLAST of Spo09717.1 vs. TAIR (Arabidopsis)
Match: AT5G47060.1 (Protein of unknown function (DUF581)) HSP 1 Score: 127.1 bits (318), Expect = 1.200e-29 Identity = 93/194 (47.94%), Postives = 111/194 (57.22%), Query Frame = 1
BLAST of Spo09717.1 vs. TAIR (Arabidopsis)
Match: AT4G17670.1 (Protein of unknown function (DUF581)) HSP 1 Score: 114.0 bits (284), Expect = 1.000e-25 Identity = 79/188 (42.02%), Postives = 102/188 (54.26%), Query Frame = 1
BLAST of Spo09717.1 vs. TAIR (Arabidopsis)
Match: AT2G44670.1 (Protein of unknown function (DUF581)) HSP 1 Score: 81.6 bits (200), Expect = 5.600e-16 Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1
BLAST of Spo09717.1 vs. TAIR (Arabidopsis)
Match: AT1G22160.1 (Protein of unknown function (DUF581)) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-12 Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1
BLAST of Spo09717.1 vs. TAIR (Arabidopsis)
Match: AT1G78020.1 (Protein of unknown function (DUF581)) HSP 1 Score: 66.2 bits (160), Expect = 2.400e-11 Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09717.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09717.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09717.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo09717.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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