Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAACATCTATCGACTTTGCTCTTTTGGCAAATCCAGGATCAAAAGCCAAGTGGCCTTGTAAAGAACCTTCAAATTAAAAGCACAATTCACAAGAGCCCCACTTCTTGTTTGTTTCAATAAATTCTCATTAAGTTTGTCTATCTATTTTTACTTATATTTGGTACTAAAAATGTTATAAACTCATAACTCATCAATTTGTATAACACTCAATTTACTACAAACAAACATGGCGCTAGGGAAAATCAACTTGCTCTTCATTGTTATCTTTTTCAGCTTCGCGGTCCAAGGTATGTTCGATTTATTACTTTAATACTCGCTAGCTTCTCTTTATTATGGAGTAATGCGTTATTATGCTAAGAGTCTTAGTATAGTTATGATATAAAGCATTAAACAGATATCATAACTCTATCGTAAATTCGTAACACATGATACTTAAGTTGTTATGAAATTACAAATTGTCGTGTATAGACTTTACCCTTTTTACGTTATATTCTTATATTTTGTAAACTATAAGTTTTATTAAATTATATGGGTTGTTTAGAGCCTAGATAATACTTTCTATTAGATCTATAGCAAAATATTATACTCCATTTATTTCATTTGACTAATGTTGTTGTCCCATTTACCAATTAATTTATTAATCTATTGTTTATGGTAGTTATATTGATTTGTAAAGCTAATATGTTTATGTAACATTTACCTATATTTCAAAATTTTAATATAGGATAAACAAAAGTAACGACTAACATATAAATCAACTTTGGTTTAAAAAAAACATAAAAGGTGATTTCTTGATGTCATGATCATATTACATGAGTGTGTGATCGTGTATGTCAACTACGCAACAACTTATTCACAACGCTGTGTACTCATTAATTAACGATGATAGTTATAAATTTATAATAGTGAAAACATTGGGTTTTACATGCAGGCATGGGGCAGTGCTCAGTGAAGGATATGAGCATAAATCAAAGCAAGGTGGAATTAGTAAAGAATAATGATACAGTTATGGGGCGAGTTTGGAATGTGACAATCACGAATAATTGCTATTGCTCTCAATCAAATGTTAAAATTGCTTGTACGGGGATTCGAACCTTGAAAGAAAATGTGGATCCCTCAATTGTGAAGATGGCAAAGGGTAAAGGAGTTGTGAAAAATGGGGATCCAATTTATCCATATACTTCAGTTGGATTTACCTATGCTTCTACTTTACCACTTCAGTTCAGGCTACTTTCTTCTCAAGTTTCTTGTTCTTAAATCGACCGACCGACCTACCTATGATAGTAACAATCCATGTTATGTTATGTTATGTTATGTACGTAGTATAATGTATATGTTGTTTTAGACATGTATCATGTATGTTGTTTTTGAGTTTCAATTCTACTCATGTTTGTTGTCAATGAGGTAATTCGAATGTTCATCAATGATTGATAGATCTTTCTCTTTGTTTTTCCCTTTTATTGATTAAACTAGCTTTTGAGCCCGTTCTATGAACGGGCGGTTGCATAGTGGTTGTTCAGGTGTCTTTTAAAGTTTTAATTAGTGAGTACTTCTGATTTTTGGTAATTAAATAGAGTTGTAATTTGAAGGTTGGAAAAAT TTAACATCTATCGACTTTGCTCTTTTGGCAAATCCAGGATCAAAAGCCAAGTGGCCTTGTAAAGAACCTTCAAATTAAAAGCACAATTCACAAGAGCCCCACTTCTTGTTTGTTTCAATAAATTCTCATTAAGTTTGTCTATCTATTTTTACTTATATTTGGTACTAAAAATGTTATAAACTCATAACTCATCAATTTGTATAACACTCAATTTACTACAAACAAACATGGCGCTAGGGAAAATCAACTTGCTCTTCATTGTTATCTTTTTCAGCTTCGCGGTCCAAGGCATGGGGCAGTGCTCAGTGAAGGATATGAGCATAAATCAAAGCAAGGTGGAATTAGTAAAGAATAATGATACAGTTATGGGGCGAGTTTGGAATGTGACAATCACGAATAATTGCTATTGCTCTCAATCAAATGTTAAAATTGCTTGTACGGGGATTCGAACCTTGAAAGAAAATGTGGATCCCTCAATTGTGAAGATGGCAAAGGGTAAAGGAGTTGTGAAAAATGGGGATCCAATTTATCCATATACTTCAGTTGGATTTACCTATGCTTCTACTTTACCACTTCAGTTCAGGCTACTTTCTTCTCAAGTTTCTTGTTCTTAAATCGACCGACCGACCTACCTATGATAGTAACAATCCATGTTATGTTATGTTATGTTATGTACGTAGTATAATGTATATGTTGTTTTAGACATGTATCATGTATGTTGTTTTTGAGTTTCAATTCTACTCATGTTTGTTGTCAATGAGGTAATTCGAATGTTCATCAATGATTGATAGATCTTTCTCTTTGTTTTTCCCTTTTATTGATTAAACTAGCTTTTGAGCCCGTTCTATGAACGGGCGGTTGCATAGTGGTTGTTCAGGTGTCTTTTAAAGTTTTAATTAGTGAGTACTTCTGATTTTTGGTAATTAAATAGAGTTGTAATTTGAAGGTTGGAAAAAT ATGGCGCTAGGGAAAATCAACTTGCTCTTCATTGTTATCTTTTTCAGCTTCGCGGTCCAAGGCATGGGGCAGTGCTCAGTGAAGGATATGAGCATAAATCAAAGCAAGGTGGAATTAGTAAAGAATAATGATACAGTTATGGGGCGAGTTTGGAATGTGACAATCACGAATAATTGCTATTGCTCTCAATCAAATGTTAAAATTGCTTGTACGGGGATTCGAACCTTGAAAGAAAATGTGGATCCCTCAATTGTGAAGATGGCAAAGGGTAAAGGAGTTGTGAAAAATGGGGATCCAATTTATCCATATACTTCAGTTGGATTTACCTATGCTTCTACTTTACCACTTCAGTTCAGGCTACTTTCTTCTCAAGTTTCTTGTTCTTAA MALGKINLLFIVIFFSFAVQGMGQCSVKDMSINQSKVELVKNNDTVMGRVWNVTITNNCYCSQSNVKIACTGIRTLKENVDPSIVKMAKGKGVVKNGDPIYPYTSVGFTYASTLPLQFRLLSSQVSCS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09585.1 vs. NCBI nr
Match: gi|902197275|gb|KNA13366.1| (hypothetical protein SOVF_117500 [Spinacia oleracea]) HSP 1 Score: 218.4 bits (555), Expect = 7.300e-54 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
BLAST of Spo09585.1 vs. NCBI nr
Match: gi|731316740|ref|XP_010665583.1| (PREDICTED: uncharacterized protein LOC104882862 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 171.0 bits (432), Expect = 1.300e-39 Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1
BLAST of Spo09585.1 vs. NCBI nr
Match: gi|828297459|ref|XP_012568844.1| (PREDICTED: protein TAPETUM DETERMINANT 1-like [Cicer arietinum]) HSP 1 Score: 90.1 bits (222), Expect = 3.000e-15 Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1
BLAST of Spo09585.1 vs. NCBI nr
Match: gi|658059546|ref|XP_008365597.1| (PREDICTED: uncharacterized protein LOC103429232 [Malus domestica]) HSP 1 Score: 88.6 bits (218), Expect = 8.700e-15 Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 1
BLAST of Spo09585.1 vs. NCBI nr
Match: gi|694400126|ref|XP_009375166.1| (PREDICTED: uncharacterized protein At1g05835-like [Pyrus x bretschneideri]) HSP 1 Score: 88.2 bits (217), Expect = 1.100e-14 Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 1
BLAST of Spo09585.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1G0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117500 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 5.100e-54 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
BLAST of Spo09585.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3V7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g030810 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 9.300e-40 Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 1
BLAST of Spo09585.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LEA1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G875970 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.400e-14 Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 1
BLAST of Spo09585.1 vs. UniProtKB/TrEMBL
Match: A0A061E9U0_THECC (Beta-1,3-N-Acetylglucosaminyltransferase family protein, putative OS=Theobroma cacao GN=TCM_007678 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.800e-14 Identity = 45/123 (36.59%), Postives = 73/123 (59.35%), Query Frame = 1
BLAST of Spo09585.1 vs. UniProtKB/TrEMBL
Match: I1MWZ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G218100 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.000e-13 Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 1
BLAST of Spo09585.1 vs. TAIR (Arabidopsis)
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein) HSP 1 Score: 57.0 bits (136), Expect = 9.900e-9 Identity = 37/129 (28.68%), Postives = 61/129 (47.29%), Query Frame = 1
BLAST of Spo09585.1 vs. TAIR (Arabidopsis)
Match: AT4G32105.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein) HSP 1 Score: 50.4 bits (119), Expect = 9.300e-7 Identity = 34/129 (26.36%), Postives = 61/129 (47.29%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09585.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09585.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09585.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo09585.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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