Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATAGTAGTGGAAATAATATTCAAGAATTACAAGAAGAAGAATTACAAGTAGATTACCAAGACTGCCCTCAACAAAACAACAGCATCATCCTTAATAATAACCTAGAAATGCAACAATATCACCAAGCAACAACATCTCATTCTGATCCATTTGTAGGTAGTTTTGGAGGCGGTGGTGGAAGGCCAGGAATGGTATTTCAAGATCACTCTCCACCACCNGAGGCGGTGGTGGAAGGCCAGGAATGGTATTTCAAGATCACTCTCCACCACCGCCGATGCCGGTACAACCTCATATCTTACCATGGGATCTTCCACAAGTTCATTCCTTCCCACAAACACATGATCCCTTCTTTTTCCCATCCTCATCTTCTTATGGTGGGTTGTTTACTAGAAGGCCCTCTAATTCTCTACAATTTGCATATGAGGGTTCCTCCTCAGATCATCTTCGCCTTCTTTCTGATGCCCTTGGTCCAATGGTTCAGCCTGGTTCAGCCCCTTTTGGACTTCAAGCTGAGCTCAATAAGATGACTGCACAAGAGATCATGGATGCTAAAGCTCTTGCTGCTTCTAAGAGTCACAGTGAGGCGGAGCGCCGCCGTCGTGAAAGGATCAATAATCATCTTGCTAAGTTAAGGAGCTTGTTGCCTAGCACCACTAAAGTAAGTCTTCATCTAAATTTTCCATAACCCTTTTCATGAGATCATACCTTTTATTTTTTTTATTTTTTTAATCATCATTACTTGAATTTATTTATATTTAAACAAGCACGCGTAGCAAGAGATTTCATATTATAATGGCATCAAAACTTTGGGTATACTTGTTTTAAGATTTGGTACAGATTTTACAAATGACTTGAACAATTTGGAATTATTTGATCATGGATATTCATATATTTGTACTCACATGAGGATTAAATATACACTAATATATATGTTCCAACTTCCAACCATATAATGGTCATGCAATATCCTTTGTTTTCTTTTGGGATATTTCTATCTTTTACTACCTCCGTTCCTCTATATGATCGAGAGAGTCTTGATGTAGTCATTGAGTGTAAAAAAAAGTTAATATATATAGTAAAGAGTGATTATGAAAATGTGAGTTGATGTAAAAAAAATGTTTAACATCTTTTAGAAACGAATTAAAAGGGAACTTGTTAACATTGTTTTGTGGTTTTTTAGTGATAAAACCAAGGATTTTTTTTTTTTTTGAAAAAGATGGTGAGAAAAGGATTTAGATAGCATTGATGTCGCTTTGTTGATATGATAAAGAGGAACCAGTTACCAGGTAGAAAAGCTTACATGAATAACTCTTGCCGGCCGCGCGCAAGTGCTAATTTTATGAGTCAAACTTGCAAATCATTTCTAGTAAATCCACTGACACAATAATCAAATTTCAACTTTATAATCTGGATTGTATTTTATTTTTAATTTTATTTTTTGTCTTTTTTACTAGACGGACAAGGCGTCGTTGCTGGCGGAAGTGATCCAACACGTAAAAGAGCTACGGAGGCAGACCTCCGTAATAGCAGAAACTAGCGTCATCCCAACGGAAAGCGACGAGCTTACGGTGGATGCAGCTTCGGATGAGCAAGATGGGAGGTTTATCATCAAGGCTTCATTGTGTTGCGATGACCGTTCTGATTTATTGCCGGATTTAATCAAGGCTCTAAAAACCCTAAGGTTAAAGACATTAAAGGCGGAGATTTCTACCCTAGGTGGGAGGGTTAAGAATGTACTATTTGTCACCCATGAACCTAATAATAGTGACCATGATAATAATAGTAACAATATTAATGAAAATAACCATGACCATGACGAACAACCACCACCCGACCATTGTTCTATTGACTTAATACAAGAGATGCTAAAGGCGGTCATGGAAAAATCCGGCGGTGGGGACGAGTCTGCCGCCTCCGGTAATCCTAAGAGGCAAAGGACAACAAACATTACCATCTCCTAATTAACTACATAATTAATATGGATTTTATTAACAAGCTAGCTAGGGTCTCTTTGAAACATTTTATACTAACAAAGATGACCTACCTTAATTAATTGCATGGTTTTTTTTTTTTTTTGTTTGTTTGTAATTTTGGGTATTATTTGGGTTTGCATGGGTGTGCCTAGCTTTGCTTCTTCGTATCTTATCTTCTTCATGTTACTATTACTATCAATATATCGCTATTTGGAATTCTCTCAAGTGACGAGAGATGTATGATCATATAGCTTGAATTGGGGTTTTTCTTTTGAGTGTTGCACTTAGTATTATAATTCATCATCAGTATAATTTCCCATGCATCAGAATTTGAAGACAATTTAGAATGATGATATTTTGTAGTGTAATAACATTATGCTTGTTCAGTCGGAGAAAAAGGTACTACTCCAGTATATGAGAGCAAGGTTTGTTATAGCAGAAGAAAGAAACAAGGAAATATATCTTTTTCGTCAAGAGAGATACCTTACCCTTAATTTCCAAAAATGGAAATTTATTCAAATTAAATTAATTTGATTGCAATTATATTTTTGGAACTCTTTATTTAAAATAGCAGCTGGGAAATTTGAATAATAAAAAAGAAGTAAAATGAAAGATGATGAATAATATATGTTGTTTGGTAGTGGGTTTGTTGAAAGAGAATGGGATTAGACATCATCATCACCACATGTAATTGTGATGTGGG ATGAATAGTAGTGGAAATAATATTCAAGAATTACAAGAAGAAGAATTACAAGTAGATTACCAAGACTGCCCTCAACAAAACAACAGCATCATCCTTAATAATAACCTAGAAATGCAACAATATCACCAAGCAACAACATCTCATTCTGATCCATTTGTAGGTAGTTTTGGAGGCGGTGGTGGAAGGCCAGGAATGGTATTTCAAGATCACTCTCCACCACCGCCGATGCCGGTACAACCTCATATCTTACCATGGGATCTTCCACAAGTTCATTCCTTCCCACAAACACATGATCCCTTCTTTTTCCCATCCTCATCTTCTTATGGTGGGTTGTTTACTAGAAGGCCCTCTAATTCTCTACAATTTGCATATGAGGGTTCCTCCTCAGATCATCTTCGCCTTCTTTCTGATGCCCTTGGTCCAATGGTTCAGCCTGGTTCAGCCCCTTTTGGACTTCAAGCTGAGCTCAATAAGATGACTGCACAAGAGATCATGGATGCTAAAGCTCTTGCTGCTTCTAAGAGTCACAGTGAGGCGGAGCGCCGCCGTCGTGAAAGGATCAATAATCATCTTGCTAAGTTAAGGAGCTTGTTGCCTAGCACCACTAAAACGGACAAGGCGTCGTTGCTGGCGGAAGTGATCCAACACGTAAAAGAGCTACGGAGGCAGACCTCCGTAATAGCAGAAACTAGCGTCATCCCAACGGAAAGCGACGAGCTTACGGTGGATGCAGCTTCGGATGAGCAAGATGGGAGGTTTATCATCAAGGCTTCATTGTGTTGCGATGACCGTTCTGATTTATTGCCGGATTTAATCAAGGCTCTAAAAACCCTAAGGTTAAAGACATTAAAGGCGGAGATTTCTACCCTAGGTGGGAGGGTTAAGAATGTACTATTTGTCACCCATGAACCTAATAATAGTGACCATGATAATAATAGTAACAATATTAATGAAAATAACCATGACCATGACGAACAACCACCACCCGACCATTGTTCTATTGACTTAATACAAGAGATGCTAAAGGCGGTCATGGAAAAATCCGGCGGTGGGGACGAGTCTGCCGCCTCCGGTAATCCTAAGAGGCAAAGGACAACAAACATTACCATCTCCTAATTAACTACATAATTAATATGGATTTTATTAACAAGCTAGCTAGGGTCTCTTTGAAACATTTTATACTAACAAAGATGACCTACCTTAATTAATTGCATGGTTTTTTTTTTTTTTTGTTTGTTTGTAATTTTGGGTATTATTTGGGTTTGCATGGGTGTGCCTAGCTTTGCTTCTTCGTATCTTATCTTCTTCATGTTACTATTACTATCAATATATCGCTATTTGGAATTCTCTCAAGTGACGAGAGATGTATGATCATATAGCTTGAATTGGGGTTTTTCTTTTGAGTGTTGCACTTAGTATTATAATTCATCATCAGTATAATTTCCCATGCATCAGAATTTGAAGACAATTTAGAATGATGATATTTTGTAGTGTAATAACATTATGCTTGTTCAGTCGGAGAAAAAGGTACTACTCCAGTATATGAGAGCAAGGTTTGTTATAGCAGAAGAAAGAAACAAGGAAATATATCTTTTTCGTCAAGAGAGATACCTTACCCTTAATTTCCAAAAATGGAAATTTATTCAAATTAAATTAATTTGATTGCAATTATATTTTTGGAACTCTTTATTTAAAATAGCAGCTGGGAAATTTGAATAATAAAAAAGAAGTAAAATGAAAGATGATGAATAATATATGTTGTTTGGTAGTGGGTTTGTTGAAAGAGAATGGGATTAGACATCATCATCACCACATGTAATTGTGATGTGGG ATGAATAGTAGTGGAAATAATATTCAAGAATTACAAGAAGAAGAATTACAAGTAGATTACCAAGACTGCCCTCAACAAAACAACAGCATCATCCTTAATAATAACCTAGAAATGCAACAATATCACCAAGCAACAACATCTCATTCTGATCCATTTGTAGGTAGTTTTGGAGGCGGTGGTGGAAGGCCAGGAATGGTATTTCAAGATCACTCTCCACCACCGCCGATGCCGGTACAACCTCATATCTTACCATGGGATCTTCCACAAGTTCATTCCTTCCCACAAACACATGATCCCTTCTTTTTCCCATCCTCATCTTCTTATGGTGGGTTGTTTACTAGAAGGCCCTCTAATTCTCTACAATTTGCATATGAGGGTTCCTCCTCAGATCATCTTCGCCTTCTTTCTGATGCCCTTGGTCCAATGGTTCAGCCTGGTTCAGCCCCTTTTGGACTTCAAGCTGAGCTCAATAAGATGACTGCACAAGAGATCATGGATGCTAAAGCTCTTGCTGCTTCTAAGAGTCACAGTGAGGCGGAGCGCCGCCGTCGTGAAAGGATCAATAATCATCTTGCTAAGTTAAGGAGCTTGTTGCCTAGCACCACTAAAACGGACAAGGCGTCGTTGCTGGCGGAAGTGATCCAACACGTAAAAGAGCTACGGAGGCAGACCTCCGTAATAGCAGAAACTAGCGTCATCCCAACGGAAAGCGACGAGCTTACGGTGGATGCAGCTTCGGATGAGCAAGATGGGAGGTTTATCATCAAGGCTTCATTGTGTTGCGATGACCGTTCTGATTTATTGCCGGATTTAATCAAGGCTCTAAAAACCCTAAGGTTAAAGACATTAAAGGCGGAGATTTCTACCCTAGGTGGGAGGGTTAAGAATGTACTATTTGTCACCCATGAACCTAATAATAGTGACCATGATAATAATAGTAACAATATTAATGAAAATAACCATGACCATGACGAACAACCACCACCCGACCATTGTTCTATTGACTTAATACAAGAGATGCTAAAGGCGGTCATGGAAAAATCCGGCGGTGGGGACGAGTCTGCCGCCTCCGGTAATCCTAAGAGGCAAAGGACAACAAACATTACCATCTCCTAA MNSSGNNIQELQEEELQVDYQDCPQQNNSIILNNNLEMQQYHQATTSHSDPFVGSFGGGGGRPGMVFQDHSPPPPMPVQPHILPWDLPQVHSFPQTHDPFFFPSSSSYGGLFTRRPSNSLQFAYEGSSSDHLRLLSDALGPMVQPGSAPFGLQAELNKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELRRQTSVIAETSVIPTESDELTVDAASDEQDGRFIIKASLCCDDRSDLLPDLIKALKTLRLKTLKAEISTLGGRVKNVLFVTHEPNNSDHDNNSNNINENNHDHDEQPPPDHCSIDLIQEMLKAVMEKSGGGDESAASGNPKRQRTTNITIS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09405.1 vs. NCBI nr
Match: gi|902156972|gb|KNA06070.1| (hypothetical protein SOVF_184570 [Spinacia oleracea]) HSP 1 Score: 717.6 bits (1851), Expect = 1.100e-203 Identity = 370/371 (99.73%), Postives = 370/371 (99.73%), Query Frame = 1
BLAST of Spo09405.1 vs. NCBI nr
Match: gi|731340485|ref|XP_010681418.1| (PREDICTED: transcription factor bHLH30 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 546.6 bits (1407), Expect = 3.400e-152 Identity = 310/386 (80.31%), Postives = 335/386 (86.79%), Query Frame = 1
BLAST of Spo09405.1 vs. NCBI nr
Match: gi|470122226|ref|XP_004297146.1| (PREDICTED: transcription factor bHLH30 [Fragaria vesca subsp. vesca]) HSP 1 Score: 374.0 bits (959), Expect = 3.000e-100 Identity = 220/355 (61.97%), Postives = 256/355 (72.11%), Query Frame = 1
BLAST of Spo09405.1 vs. NCBI nr
Match: gi|743784148|ref|XP_011021594.1| (PREDICTED: transcription factor bHLH30-like [Populus euphratica]) HSP 1 Score: 374.0 bits (959), Expect = 3.000e-100 Identity = 231/374 (61.76%), Postives = 272/374 (72.73%), Query Frame = 1
BLAST of Spo09405.1 vs. NCBI nr
Match: gi|802680781|ref|XP_012082021.1| (PREDICTED: transcription factor bHLH30-like [Jatropha curcas]) HSP 1 Score: 372.9 bits (956), Expect = 6.700e-100 Identity = 223/351 (63.53%), Postives = 258/351 (73.50%), Query Frame = 1
BLAST of Spo09405.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFP5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_184570 PE=4 SV=1) HSP 1 Score: 717.6 bits (1851), Expect = 7.700e-204 Identity = 370/371 (99.73%), Postives = 370/371 (99.73%), Query Frame = 1
BLAST of Spo09405.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EYY8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g141380 PE=4 SV=1) HSP 1 Score: 546.6 bits (1407), Expect = 2.400e-152 Identity = 310/386 (80.31%), Postives = 335/386 (86.79%), Query Frame = 1
BLAST of Spo09405.1 vs. UniProtKB/TrEMBL
Match: A0A067KC07_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18280 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 4.700e-100 Identity = 223/351 (63.53%), Postives = 258/351 (73.50%), Query Frame = 1
BLAST of Spo09405.1 vs. UniProtKB/TrEMBL
Match: B9HIY4_POPTR (Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0008s11490g PE=4 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 3.900e-99 Identity = 229/374 (61.23%), Postives = 272/374 (72.73%), Query Frame = 1
BLAST of Spo09405.1 vs. UniProtKB/TrEMBL
Match: M5XHM8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019406mg PE=4 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 1.500e-98 Identity = 219/348 (62.93%), Postives = 254/348 (72.99%), Query Frame = 1
BLAST of Spo09405.1 vs. ExPASy Swiss-Prot
Match: BH030_ARATH (Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 7.400e-83 Identity = 201/375 (53.60%), Postives = 244/375 (65.07%), Query Frame = 1
BLAST of Spo09405.1 vs. ExPASy Swiss-Prot
Match: BH032_ARATH (Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 5.400e-65 Identity = 163/328 (49.70%), Postives = 220/328 (67.07%), Query Frame = 1
BLAST of Spo09405.1 vs. ExPASy Swiss-Prot
Match: BH106_ARATH (Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106 PE=2 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 5.100e-31 Identity = 90/200 (45.00%), Postives = 132/200 (66.00%), Query Frame = 1
BLAST of Spo09405.1 vs. ExPASy Swiss-Prot
Match: BH107_ARATH (Putative transcription factor bHLH107 OS=Arabidopsis thaliana GN=BHLH107 PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.200e-27 Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 1
BLAST of Spo09405.1 vs. ExPASy Swiss-Prot
Match: BH051_ARATH (Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.400e-20 Identity = 60/148 (40.54%), Postives = 99/148 (66.89%), Query Frame = 1
BLAST of Spo09405.1 vs. TAIR (Arabidopsis)
Match: AT1G68810.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 308.9 bits (790), Expect = 4.200e-84 Identity = 201/375 (53.60%), Postives = 244/375 (65.07%), Query Frame = 1
BLAST of Spo09405.1 vs. TAIR (Arabidopsis)
Match: AT3G25710.1 (basic helix-loop-helix 32) HSP 1 Score: 249.6 bits (636), Expect = 3.000e-66 Identity = 163/328 (49.70%), Postives = 220/328 (67.07%), Query Frame = 1
BLAST of Spo09405.1 vs. TAIR (Arabidopsis)
Match: AT2G41130.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 136.7 bits (343), Expect = 2.800e-32 Identity = 90/200 (45.00%), Postives = 132/200 (66.00%), Query Frame = 1
BLAST of Spo09405.1 vs. TAIR (Arabidopsis)
Match: AT3G56770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 125.6 bits (314), Expect = 6.600e-29 Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 1
BLAST of Spo09405.1 vs. TAIR (Arabidopsis)
Match: AT2G40200.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 102.1 bits (253), Expect = 7.800e-22 Identity = 60/148 (40.54%), Postives = 99/148 (66.89%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09405.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09405.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09405.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09405.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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