Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTTCTCAAAATTTGAACATTTAGATTATAAATAACCAACTTACCGGTTAGTTAGTTTTTATTAATTTCTTTATATTATGTGGACAGGACACATATATATAAAACCCCTAAGAAGAAGGGTCTTTGCTTAACATTCCAATTCCAAACACAGTAAACCAAAAAAAAAAACCCAGTATTAATTTTCAGGATGGCTGAGATAGAGAAGCTAAACTCAGTGCCAACGATGATCACCTTTCTGTCTTCTCTCCTTCAACGAGTAGCAGAATCGAACGATATCCAACGGAAATTGGAACCCCAGAAAGTGTCGGTATTCCATGGTCTTACTCAACCTACAATCTCAATTCAAACTTACTTAGAAAGGATTTTCAAGTATGCAAATTGTAGCCCATCTTGCTTTGTTGTTGCTTATGTTTACCTTGATCGTTTCACTCAAAGACAACCATTGTTGCCTATTAATTCTTACAATGTTCATCGTTTGTTGATTACTAGTGTCATGATTTCTGCCAAATTCATGGATGACATGTAAGTTTCTCTCTTTTTCTTATTATAATTGCAATTTTCAATTTCCTTTTTTTGCTCTGTTTTTTTTTCTTCTTCTTCTTTCTTCGACAATTATGCTTAAATTTTTCATAATGAGCTGAAATTTCTGGGTTTTTTGAATTTCGCTTTGTTGGTTTCAAATTTTGGTAATTTATTGGTCCTCTGTTTTTCAAAATTATTCATTTTCTTTAAGGAATTTTGAGTTAAAACTAATTCATTAATCAAGAGTCAAACAGACAATTACAATACAGATCAAAATTTTCTATAACATTTCAGGATTACAACAAGTCCAAATTTATTTACATTTGTAACCTATTTTTGTTTTAGTAATAAAATCTATAATAAAAAATTGGTAGTAAAACATGTTTTGGGGAAGAAATTGGGCAATGCAAGACCAGCTAAATCCAGCTACTAATTAAGCTGTCTTTTTCTCAAATGAGTTAAAAATTTCAAAATAAAAAGAAAATCTTTTATACGATCCTTTCACATGGGAGGCTCTTAATAATGAGGCCCACTCTTAAGCATAAATTTTGTTTTGTAATAATTTCAAATTTGAAAAATGAATTAAAGTATAATTTGTATTAATCCAATATTATTTAAATTTACAGGTATTACAACAATGCATATTATGCAAAAATTGGAGGTATAAACATCACAGAAATGAACTTCCTAGAGGTGGATTTCTTGTTTGGGTTGGGATTTCATTTAAATGTGACACCCAACACATTTCATACCTATTGTTCTTACCTTCAAAGAGAAATGTTGCTACTCCAACCCCCTCTTAATGTCGTCATTTCCGACTCTAATCCGTCGTTAATCATGGGAAAATCGTCTATGATAATCCACTCGTGTTTCAACGACGATGAGTCTACGTCTCATCAACAGCAGCAACAACAACAACAACAACAACAACAACAATTAGCCGTTTAGCTAATCCGGCTATAATTATTAGAATTTAAATTGTACTTAGCTTGTAGATCGAGATAATCTTAATCTCCTTATTTTTTTTTCTTCTTCTTAATTTACAATGGTTGATGAAAATGCATGAGCAACATGGGAATTTTGCAACACTCTATTTGTCTCTAAGTATAATGCTTTCCCTCTATTTTTGGGTAACTTTCCCTTATAAAATATGTCCTGTAACCGGGTATACTTAGGTGTCTGATCGAGGAATAGGCGTACCTAAAGATATTTATTTTGGTCATTTCAATTAGTATAGTGAGATTAAAGAGGTGGGTGTGTTTTCTTTACAGAGTGGCCGGCTAAGAAAGTGTATAAATGTGGTCTCACTTTCTTACCCAAGTTGTAAGAATTGAAGATACTTTGTCCTCAGCTCTTTCCTCATCCTCAACCAAACATAGATTCTAAACCTTAAAATTTGTTGGCTACTTTTTATTTGCTACTTGTACTCAAAGGGAAACTTAGCCATAAATCCAGTACCCACACTACCCACCATACCTTTTCTCCTCTTTGCACCTATCTCGCTAAGCAAAGAATTCAAAGCAACAAACTCAAAACTTACAATACACATATATATATACACCTATATCCGTATTAATTAGTTGTCATATTATTAGTTCTCGCTATACTCTCAG TATTTTCTCAAAATTTGAACATTTAGATTATAAATAACCAACTTACCGGTTAGTTAGTTTTTATTAATTTCTTTATATTATGTGGACAGGACACATATATATAAAACCCCTAAGAAGAAGGGTCTTTGCTTAACATTCCAATTCCAAACACAGTAAACCAAAAAAAAAAACCCAGTATTAATTTTCAGGATGGCTGAGATAGAGAAGCTAAACTCAGTGCCAACGATGATCACCTTTCTGTCTTCTCTCCTTCAACGAGTAGCAGAATCGAACGATATCCAACGGAAATTGGAACCCCAGAAAGTGTCGGTATTCCATGGTCTTACTCAACCTACAATCTCAATTCAAACTTACTTAGAAAGGATTTTCAAGTATGCAAATTGTAGCCCATCTTGCTTTGTTGTTGCTTATGTTTACCTTGATCGTTTCACTCAAAGACAACCATTGTTGCCTATTAATTCTTACAATGTTCATCGTTTGTTGATTACTAGTGTCATGATTTCTGCCAAATTCATGGATGACATGTATTACAACAATGCATATTATGCAAAAATTGGAGGTATAAACATCACAGAAATGAACTTCCTAGAGGTGGATTTCTTGTTTGGGTTGGGATTTCATTTAAATGTGACACCCAACACATTTCATACCTATTGTTCTTACCTTCAAAGAGAAATGTTGCTACTCCAACCCCCTCTTAATGTCGTCATTTCCGACTCTAATCCGTCGTTAATCATGGGAAAATCGTCTATGATAATCCACTCGTGTTTCAACGACGATGAGTCTACGTCTCATCAACAGCAGCAACAACAACAACAACAACAACAACAACAATTAGCCGTTTAGCTAATCCGGCTATAATTATTAGAATTTAAATTGTACTTAGCTTGTAGATCGAGATAATCTTAATCTCCTTATTTTTTTTTCTTCTTCTTAATTTACAATGGTTGATGAAAATGCATGAGCAACATGGGAATTTTGCAACACTCTATTTGTCTCTAAGTATAATGCTTTCCCTCTATTTTTGGGTAACTTTCCCTTATAAAATATGTCCTGTAACCGGGTATACTTAGGTGTCTGATCGAGGAATAGGCGTACCTAAAGATATTTATTTTGGTCATTTCAATTAGTATAGTGAGATTAAAGAGGTGGGTGTGTTTTCTTTACAGAGTGGCCGGCTAAGAAAGTGTATAAATGTGGTCTCACTTTCTTACCCAAGTTGTAAGAATTGAAGATACTTTGTCCTCAGCTCTTTCCTCATCCTCAACCAAACATAGATTCTAAACCTTAAAATTTGTTGGCTACTTTTTATTTGCTACTTGTACTCAAAGGGAAACTTAGCCATAAATCCAGTACCCACACTACCCACCATACCTTTTCTCCTCTTTGCACCTATCTCGCTAAGCAAAGAATTCAAAGCAACAAACTCAAAACTTACAATACACATATATATATACACCTATATCCGTATTAATTAGTTGTCATATTATTAGTTCTCGCTATACTCTCAG ATGGCTGAGATAGAGAAGCTAAACTCAGTGCCAACGATGATCACCTTTCTGTCTTCTCTCCTTCAACGAGTAGCAGAATCGAACGATATCCAACGGAAATTGGAACCCCAGAAAGTGTCGGTATTCCATGGTCTTACTCAACCTACAATCTCAATTCAAACTTACTTAGAAAGGATTTTCAAGTATGCAAATTGTAGCCCATCTTGCTTTGTTGTTGCTTATGTTTACCTTGATCGTTTCACTCAAAGACAACCATTGTTGCCTATTAATTCTTACAATGTTCATCGTTTGTTGATTACTAGTGTCATGATTTCTGCCAAATTCATGGATGACATGTATTACAACAATGCATATTATGCAAAAATTGGAGGTATAAACATCACAGAAATGAACTTCCTAGAGGTGGATTTCTTGTTTGGGTTGGGATTTCATTTAAATGTGACACCCAACACATTTCATACCTATTGTTCTTACCTTCAAAGAGAAATGTTGCTACTCCAACCCCCTCTTAATGTCGTCATTTCCGACTCTAATCCGTCGTTAATCATGGGAAAATCGTCTATGATAATCCACTCGTGTTTCAACGACGATGAGTCTACGTCTCATCAACAGCAGCAACAACAACAACAACAACAACAACAACAATTAGCCGTTTAG MAEIEKLNSVPTMITFLSSLLQRVAESNDIQRKLEPQKVSVFHGLTQPTISIQTYLERIFKYANCSPSCFVVAYVYLDRFTQRQPLLPINSYNVHRLLITSVMISAKFMDDMYYNNAYYAKIGGINITEMNFLEVDFLFGLGFHLNVTPNTFHTYCSYLQREMLLLQPPLNVVISDSNPSLIMGKSSMIIHSCFNDDESTSHQQQQQQQQQQQQQLAV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09289.1 vs. NCBI nr
Match: gi|902239398|gb|KNA25588.1| (hypothetical protein SOVF_005390 [Spinacia oleracea]) HSP 1 Score: 419.9 bits (1078), Expect = 2.800e-114 Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 1
BLAST of Spo09289.1 vs. NCBI nr
Match: gi|731360823|ref|XP_010692026.1| (PREDICTED: cyclin-U4-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 372.5 bits (955), Expect = 5.100e-100 Identity = 192/211 (91.00%), Postives = 199/211 (94.31%), Query Frame = 1
BLAST of Spo09289.1 vs. NCBI nr
Match: gi|747043797|ref|XP_011085729.1| (PREDICTED: cyclin-U4-1 [Sesamum indicum]) HSP 1 Score: 322.0 bits (824), Expect = 8.000e-85 Identity = 160/208 (76.92%), Postives = 182/208 (87.50%), Query Frame = 1
BLAST of Spo09289.1 vs. NCBI nr
Match: gi|661887008|emb|CDP09417.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 314.7 bits (805), Expect = 1.300e-82 Identity = 159/209 (76.08%), Postives = 182/209 (87.08%), Query Frame = 1
BLAST of Spo09289.1 vs. NCBI nr
Match: gi|567905920|ref|XP_006445448.1| (hypothetical protein CICLE_v10022279mg [Citrus clementina]) HSP 1 Score: 313.9 bits (803), Expect = 2.200e-82 Identity = 156/208 (75.00%), Postives = 182/208 (87.50%), Query Frame = 1
BLAST of Spo09289.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1I6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005390 PE=4 SV=1) HSP 1 Score: 419.9 bits (1078), Expect = 2.000e-114 Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 1
BLAST of Spo09289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EA01_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017520 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 3.600e-100 Identity = 192/211 (91.00%), Postives = 199/211 (94.31%), Query Frame = 1
BLAST of Spo09289.1 vs. UniProtKB/TrEMBL
Match: A0A068UM84_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028772001 PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 8.900e-83 Identity = 159/209 (76.08%), Postives = 182/209 (87.08%), Query Frame = 1
BLAST of Spo09289.1 vs. UniProtKB/TrEMBL
Match: A0A067HC85_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028611mg PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.500e-82 Identity = 156/208 (75.00%), Postives = 182/208 (87.50%), Query Frame = 1
BLAST of Spo09289.1 vs. UniProtKB/TrEMBL
Match: V4TEC6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022279mg PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.500e-82 Identity = 156/208 (75.00%), Postives = 182/208 (87.50%), Query Frame = 1
BLAST of Spo09289.1 vs. ExPASy Swiss-Prot
Match: CCU41_ARATH (Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 8.300e-74 Identity = 147/211 (69.67%), Postives = 177/211 (83.89%), Query Frame = 1
BLAST of Spo09289.1 vs. ExPASy Swiss-Prot
Match: CCU43_ARATH (Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 4.600e-56 Identity = 112/213 (52.58%), Postives = 158/213 (74.18%), Query Frame = 1
BLAST of Spo09289.1 vs. ExPASy Swiss-Prot
Match: CCP41_ORYSJ (Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 7.800e-56 Identity = 121/221 (54.75%), Postives = 154/221 (69.68%), Query Frame = 1
BLAST of Spo09289.1 vs. ExPASy Swiss-Prot
Match: CCU42_ARATH (Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.500e-54 Identity = 105/167 (62.87%), Postives = 140/167 (83.83%), Query Frame = 1
BLAST of Spo09289.1 vs. ExPASy Swiss-Prot
Match: CCU31_ARATH (Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2) HSP 1 Score: 155.6 bits (392), Expect = 6.200e-37 Identity = 78/162 (48.15%), Postives = 110/162 (67.90%), Query Frame = 1
BLAST of Spo09289.1 vs. TAIR (Arabidopsis)
Match: AT2G44740.1 (cyclin p4;1) HSP 1 Score: 278.1 bits (710), Expect = 4.700e-75 Identity = 147/211 (69.67%), Postives = 177/211 (83.89%), Query Frame = 1
BLAST of Spo09289.1 vs. TAIR (Arabidopsis)
Match: AT5G61650.1 (CYCLIN P4;2) HSP 1 Score: 219.2 bits (557), Expect = 2.600e-57 Identity = 112/213 (52.58%), Postives = 158/213 (74.18%), Query Frame = 1
BLAST of Spo09289.1 vs. TAIR (Arabidopsis)
Match: AT5G07450.1 (cyclin p4;3) HSP 1 Score: 214.2 bits (544), Expect = 8.200e-56 Identity = 105/167 (62.87%), Postives = 140/167 (83.83%), Query Frame = 1
BLAST of Spo09289.1 vs. TAIR (Arabidopsis)
Match: AT3G63120.1 (cyclin p1;1) HSP 1 Score: 155.6 bits (392), Expect = 3.500e-38 Identity = 78/162 (48.15%), Postives = 110/162 (67.90%), Query Frame = 1
BLAST of Spo09289.1 vs. TAIR (Arabidopsis)
Match: AT3G21870.1 (cyclin p2;1) HSP 1 Score: 149.4 bits (376), Expect = 2.500e-36 Identity = 69/160 (43.12%), Postives = 109/160 (68.12%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09289.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09289.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09289.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09289.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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