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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAATTATCAACTAATTATTATTATACTATATATAAGCAAGAGTATAAGGGTAGGAATAATTTCTACAAATTCTATGCAACACCTCACTTGCTTAATTTCATGCTCAAAAGAATTATTCCAAATCCTCTTTTTTAATTAAATTATTACTCCATTTTTATTCTAAATTAATTAGTCCTCAATCATATATAGAATTTGGAAAACAACATATAGTTGAGGCCAAAAGGGGAAATTAGAGAGCTTTAATCATGATTAGGGCAGGAAGTCCTAACACACAAGGATCCAAAACAAGCCTTTCCAATAATCATAAAGTTGATGAGGAGTCTGAGGAGGATGACAAGGTATTATTATTAGAGGAAGAAGAAGAAGAAGAAGAAGAAGTTGGGGAAGAGGTGGATGACAACAGTAACAGTAACAGCCGGGTGATGATCAAGATCAATGGTTCGAGTTCGAGTACGAGCACCGTCGAGGAGGACGATAAGAAGGGGCCTAACTCCTCGGGATCCGTGAGGCCGTACAACCGCTCGAAGATGCCACGGCTCCGGTGGACCCCGGATCTTCACCTTTGCTTTGTTCATGCTGTTGAGAGGCTAGGAGGACAAGAAAGTAAGTAGCACAACTTGTACTATATCAAATTAATTGAAGTAGTATTAATTAACAATTTAAGGGTATTTAATTTAATTAATTTACTAAGGTTTTATATATGTGATGTGGAAATTGATGCAAATGTGTAGGAGCAACACCTAAGTTGGTCCTTCAGATGATGAATATCAAAGGCCTAAGTATTGCTCATGTCAAAAGTCATCTTCAGGTAACTACTAAATTCACTCAAATTAATAAGTTTAGATATAATCTGTTTAATAATTAGTTAGTTTATTAATTAATTAAATTAAGTCCTTTCTAATTAATATCTATCTTGACATTGAAATGAATTATTTATCAGATGTACAGAAGCAAAAAGATTGATGAATCAAATCAAGGTATATTTAATTTGAATCTTCTATTGAGATTTTATAACTTTTTGATTAGGGTTTTGCAATCTTTAGTTCTTTGTGTATTAATCAAATCATTATTTTCTAATTTCAATTCGATGTTTTCGATCAACCACTTTTCTGCAGCAGCTATGAGCAATCAAGGGATATTCAGTGATAATGGAAGAGATAATATCTACAATCTCAGCCAGTTACCTATGTTACAAGGCTACAATCATCAAAGACCGCCTTTTAGTCTAAGGTACAAAAATAAATTGCCCTAAAAGTTATAGGAAATAAAAATACAATTGAATCTTTTATACTCCGTACTTACTTTTCTTTTTCATTGCAACGTACTTACGTAATAGATATGGTGATCCTTCTTGGAGAGGTCATTCCAACCAAGCGTATGCTCCTTACAACGTTGGGACTTCATCATCAGAAAGATCTAGAAACGGATTGAATTTCAGTTCACTCCCGGAAAGGATGATATTTTCAAGTAGTAATAGCAATATCTTCCAAGGGCAAATGTCAAATTGGAGAAACCAACAAACACTAAAAAAAACCCCAATAATACTATCTCATCAAAGCAATGGATCATCATCATGTCAATCCACTAGTAGGCCAATTAGGTCTAACATGGAGTTAAATTTAGCAATTAGTCCAATTCAACAAGTAGTACCGCGTGATCAAGGAAAAGATCATCAAAGATCTAACTCTTCAAACTTCCTTAAACCCTACTCGAACATCATCGATATCAAACAAGGTTCAACAACCACAACAAGTAATCATTTGAAGAGGAAAGCTATGGATTTGGATCTCTCCCTTGCCCTAGCTCATCCAAAAGATATCGACAACAACGATCCATTAACCAAGAAAAACACAAAGGACAAAGAGGTAATAATAGGAAGTAGTGATAAATTATTATCACTTTCATTACAATATCCACCACCACCATTATTATTATCGTCTAGCTCGGAACACGATAACCAGTTCATAATTAGCAAGTTGAAGGAAGGAGATGCAAGTAGTAGTAGGATGAATAATAAGCAACAAACAAGGACGAGTTTGGATCTGACTTTATGATTGAATGAAGACAATTTACAAGTGAGATCTTGATCATGTACTTTTTTTTATTTGCAAAAAGTAGATAAATATATCTATTGCATATAATATAACTAAGGTAATATAATGCCAAATTTAAATTGTCCTTAAGCTCTAATTTTGTTGTTGTTATACGTAGTATATCATAATCTAAATATTCTAAGTGTCTAGGAAATCGAATATTATTAGCTAGGAGTTACATAAAAGAAGGACCAGTTACATTAGTTAATTAACCATAATTATTTTTAATTTGATTTTTGTAATTTTCTCGAACTACTTCATTACTCAGAAATCAGAATCCTTGCATGATCGATAATTATATAGTATATTGTTTTTTAATGTCTTACACAAGACAAATTTGCCATCAAGAATCTTGCTTGCATTCAAATGTTGTGTTTTTTATTTTTATTTTCGAAGCCAATATATAACTATTATTTCTGAGCCACATAATTATCAACTAATTATTATTATACTATATATAAGCAAGAGTATAAGGGTAGGAATAATTTCTACAAATTCTATGCAACACCTCACTTGCTTAATTTCATGCTCAAAAGAATTATTCCAAATCCTCTTTTTTAATTAAATTATTACTCCATTTTTATTCTAAATTAATTAGTCCTCAATCATATATAGAATTTGGAAAACAACATATAGTTGAGGCCAAAAGGGGAAATTAGAGAGCTTTAATCATGATTAGGGCAGGAAGTCCTAACACACAAGGATCCAAAACAAGCCTTTCCAATAATCATAAAGTTGATGAGGAGTCTGAGGAGGATGACAAGGTATTATTATTAGAGGAAGAAGAAGAAGAAGAAGAAGAAGTTGGGGAAGAGGTGGATGACAACAGTAACAGTAACAGCCGGGTGATGATCAAGATCAATGGTTCGAGTTCGAGTACGAGCACCGTCGAGGAGGACGATAAGAAGGGGCCTAACTCCTCGGGATCCGTGAGGCCGTACAACCGCTCGAAGATGCCACGGCTCCGGTGGACCCCGGATCTTCACCTTTGCTTTGTTCATGCTGTTGAGAGGCTAGGAGGACAAGAAAGAGCAACACCTAAGTTGGTCCTTCAGATGATGAATATCAAAGGCCTAAGTATTGCTCATGTCAAAAGTCATCTTCAGATGTACAGAAGCAAAAAGATTGATGAATCAAATCAAGCAGCTATGAGCAATCAAGGGATATTCAGTGATAATGGAAGAGATAATATCTACAATCTCAGCCAGTTACCTATGTTACAAGGCTACAATCATCAAAGACCGCCTTTTAGTCTAAGATATGGTGATCCTTCTTGGAGAGGTCATTCCAACCAAGCGTATGCTCCTTACAACGTTGGGACTTCATCATCAGAAAGATCTAGAAACGGATTGAATTTCAGTTCACTCCCGGAAAGGATGATATTTTCAAGTAGTAATAGCAATATCTTCCAAGGGCAAATGTCAAATTGGAGAAACCAACAAACACTAAAAAAAACCCCAATAATACTATCTCATCAAAGCAATGGATCATCATCATGTCAATCCACTAGTAGGCCAATTAGGTCTAACATGGAGTTAAATTTAGCAATTAGTCCAATTCAACAAGTAGTACCGCGTGATCAAGGAAAAGATCATCAAAGATCTAACTCTTCAAACTTCCTTAAACCCTACTCGAACATCATCGATATCAAACAAGGTTCAACAACCACAACAAGTAATCATTTGAAGAGGAAAGCTATGGATTTGGATCTCTCCCTTGCCCTAGCTCATCCAAAAGATATCGACAACAACGATCCATTAACCAAGAAAAACACAAAGGACAAAGAGGTAATAATAGGAAGTAGTGATAAATTATTATCACTTTCATTACAATATCCACCACCACCATTATTATTATCGTCTAGCTCGGAACACGATAACCAGTTCATAATTAGCAAGTTGAAGGAAGGAGATGCAAGTAGTAGTAGGATGAATAATAAGCAACAAACAAGGACGAGTTTGGATCTGACTTTATGATTGAATGAAGACAATTTACAAGTGAGATCTTGATCATGTACTTTTTTTTATTTGCAAAAAGTAGATAAATATATCTATTGCATATAATATAACTAAGGTAATATAATGCCAAATTTAAATTGTCCTTAAGCTCTAATTTTGTTGTTGTTATACGTAGTATATCATAATCTAAATATTCTAAGTGTCTAGGAAATCGAATATTATTAGCTAGGAGTTACATAAAAGAAGGACCAGTTACATTAGTTAATTAACCATAATTATTTTTAATTTGATTTTTGTAATTTTCTCGAACTACTTCATTACTCAGAAATCAGAATCCTTGCATGATCGATAATTATATAGTATATTGTTTTTTAATGTCTTACACAAGACAAATTTGCCATCAAGAATCTTGCTTGCATTCAAATGTTGTGTTTTTTATTTTTATTTTCGAAGCCAATATATAACTATTATTTCTGAGCCACA ATGATTAGGGCAGGAAGTCCTAACACACAAGGATCCAAAACAAGCCTTTCCAATAATCATAAAGTTGATGAGGAGTCTGAGGAGGATGACAAGGTATTATTATTAGAGGAAGAAGAAGAAGAAGAAGAAGAAGTTGGGGAAGAGGTGGATGACAACAGTAACAGTAACAGCCGGGTGATGATCAAGATCAATGGTTCGAGTTCGAGTACGAGCACCGTCGAGGAGGACGATAAGAAGGGGCCTAACTCCTCGGGATCCGTGAGGCCGTACAACCGCTCGAAGATGCCACGGCTCCGGTGGACCCCGGATCTTCACCTTTGCTTTGTTCATGCTGTTGAGAGGCTAGGAGGACAAGAAAGAGCAACACCTAAGTTGGTCCTTCAGATGATGAATATCAAAGGCCTAAGTATTGCTCATGTCAAAAGTCATCTTCAGATGTACAGAAGCAAAAAGATTGATGAATCAAATCAAGCAGCTATGAGCAATCAAGGGATATTCAGTGATAATGGAAGAGATAATATCTACAATCTCAGCCAGTTACCTATGTTACAAGGCTACAATCATCAAAGACCGCCTTTTAGTCTAAGATATGGTGATCCTTCTTGGAGAGGTCATTCCAACCAAGCGTATGCTCCTTACAACGTTGGGACTTCATCATCAGAAAGATCTAGAAACGGATTGAATTTCAGTTCACTCCCGGAAAGGATGATATTTTCAAGTAGTAATAGCAATATCTTCCAAGGGCAAATGTCAAATTGGAGAAACCAACAAACACTAAAAAAAACCCCAATAATACTATCTCATCAAAGCAATGGATCATCATCATGTCAATCCACTAGTAGGCCAATTAGGTCTAACATGGAGTTAAATTTAGCAATTAGTCCAATTCAACAAGTAGTACCGCGTGATCAAGGAAAAGATCATCAAAGATCTAACTCTTCAAACTTCCTTAAACCCTACTCGAACATCATCGATATCAAACAAGGTTCAACAACCACAACAAGTAATCATTTGAAGAGGAAAGCTATGGATTTGGATCTCTCCCTTGCCCTAGCTCATCCAAAAGATATCGACAACAACGATCCATTAACCAAGAAAAACACAAAGGACAAAGAGGTAATAATAGGAAGTAGTGATAAATTATTATCACTTTCATTACAATATCCACCACCACCATTATTATTATCGTCTAGCTCGGAACACGATAACCAGTTCATAATTAGCAAGTTGAAGGAAGGAGATGCAAGTAGTAGTAGGATGAATAATAAGCAACAAACAAGGACGAGTTTGGATCTGACTTTATGA MIRAGSPNTQGSKTSLSNNHKVDEESEEDDKVLLLEEEEEEEEEVGEEVDDNSNSNSRVMIKINGSSSSTSTVEEDDKKGPNSSGSVRPYNRSKMPRLRWTPDLHLCFVHAVERLGGQERATPKLVLQMMNIKGLSIAHVKSHLQMYRSKKIDESNQAAMSNQGIFSDNGRDNIYNLSQLPMLQGYNHQRPPFSLRYGDPSWRGHSNQAYAPYNVGTSSSERSRNGLNFSSLPERMIFSSSNSNIFQGQMSNWRNQQTLKKTPIILSHQSNGSSSCQSTSRPIRSNMELNLAISPIQQVVPRDQGKDHQRSNSSNFLKPYSNIIDIKQGSTTTTSNHLKRKAMDLDLSLALAHPKDIDNNDPLTKKNTKDKEVIIGSSDKLLSLSLQYPPPPLLLSSSSEHDNQFIISKLKEGDASSSRMNNKQQTRTSLDLTL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo09117.1 vs. NCBI nr
Match: gi|902197290|gb|KNA13375.1| (hypothetical protein SOVF_117570 [Spinacia oleracea]) HSP 1 Score: 823.2 bits (2125), Expect = 2.200e-235 Identity = 434/436 (99.54%), Postives = 434/436 (99.54%), Query Frame = 1
BLAST of Spo09117.1 vs. NCBI nr
Match: gi|731362791|ref|XP_010693076.1| (PREDICTED: two-component response regulator ARR10-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 466.5 bits (1199), Expect = 5.200e-128 Identity = 296/444 (66.67%), Postives = 332/444 (74.77%), Query Frame = 1
BLAST of Spo09117.1 vs. NCBI nr
Match: gi|703133576|ref|XP_010105426.1| (Putative Myb family transcription factor [Morus notabilis]) HSP 1 Score: 227.6 bits (579), Expect = 4.100e-56 Identity = 195/455 (42.86%), Postives = 265/455 (58.24%), Query Frame = 1
BLAST of Spo09117.1 vs. NCBI nr
Match: gi|566191637|ref|XP_006378651.1| (hypothetical protein POPTR_0010s19310g [Populus trichocarpa]) HSP 1 Score: 218.8 bits (556), Expect = 1.900e-53 Identity = 192/439 (43.74%), Postives = 249/439 (56.72%), Query Frame = 1
BLAST of Spo09117.1 vs. NCBI nr
Match: gi|661882405|emb|CDP13985.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 215.7 bits (548), Expect = 1.600e-52 Identity = 170/413 (41.16%), Postives = 230/413 (55.69%), Query Frame = 1
BLAST of Spo09117.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1I5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117570 PE=4 SV=1) HSP 1 Score: 823.2 bits (2125), Expect = 1.500e-235 Identity = 434/436 (99.54%), Postives = 434/436 (99.54%), Query Frame = 1
BLAST of Spo09117.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEJ5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045740 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 3.600e-128 Identity = 296/444 (66.67%), Postives = 332/444 (74.77%), Query Frame = 1
BLAST of Spo09117.1 vs. UniProtKB/TrEMBL
Match: W9SFW5_9ROSA (Putative Myb family transcription factor OS=Morus notabilis GN=L484_009894 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.800e-56 Identity = 195/455 (42.86%), Postives = 265/455 (58.24%), Query Frame = 1
BLAST of Spo09117.1 vs. UniProtKB/TrEMBL
Match: U5FZ14_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19310g PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 1.300e-53 Identity = 192/439 (43.74%), Postives = 249/439 (56.72%), Query Frame = 1
BLAST of Spo09117.1 vs. UniProtKB/TrEMBL
Match: A0A068UZK8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039141001 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 1.100e-52 Identity = 170/413 (41.16%), Postives = 230/413 (55.69%), Query Frame = 1
BLAST of Spo09117.1 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2) HSP 1 Score: 102.8 bits (255), Expect = 9.500e-21 Identity = 83/229 (36.24%), Postives = 120/229 (52.40%), Query Frame = 1
BLAST of Spo09117.1 vs. ExPASy Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.300e-17 Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1
BLAST of Spo09117.1 vs. ExPASy Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.400e-16 Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1
BLAST of Spo09117.1 vs. ExPASy Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2) HSP 1 Score: 87.0 bits (214), Expect = 5.400e-16 Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
BLAST of Spo09117.1 vs. ExPASy Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 4.500e-15 Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
BLAST of Spo09117.1 vs. TAIR (Arabidopsis)
Match: AT2G40260.1 (Homeodomain-like superfamily protein) HSP 1 Score: 178.7 bits (452), Expect = 7.600e-45 Identity = 162/458 (35.37%), Postives = 231/458 (50.44%), Query Frame = 1
BLAST of Spo09117.1 vs. TAIR (Arabidopsis)
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein) HSP 1 Score: 177.9 bits (450), Expect = 1.300e-44 Identity = 148/364 (40.66%), Postives = 189/364 (51.92%), Query Frame = 1
BLAST of Spo09117.1 vs. TAIR (Arabidopsis)
Match: AT2G42660.1 (Homeodomain-like superfamily protein) HSP 1 Score: 119.4 bits (298), Expect = 5.500e-27 Identity = 64/105 (60.95%), Postives = 81/105 (77.14%), Query Frame = 1
BLAST of Spo09117.1 vs. TAIR (Arabidopsis)
Match: AT2G02060.1 (Homeodomain-like superfamily protein) HSP 1 Score: 103.6 bits (257), Expect = 3.100e-22 Identity = 89/244 (36.48%), Postives = 125/244 (51.23%), Query Frame = 1
BLAST of Spo09117.1 vs. TAIR (Arabidopsis)
Match: AT1G14600.1 (Homeodomain-like superfamily protein) HSP 1 Score: 102.8 bits (255), Expect = 5.300e-22 Identity = 83/229 (36.24%), Postives = 120/229 (52.40%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo09117.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo09117.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo09117.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo09117.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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