Spo08811 (gene)

Overview
NameSpo08811
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 43104789 .. 43105364 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAACAACAACATCCTCCATAGCAATTCAAATCCCCAAATACCACTTCATCATCCGATCATCATCTTCAAAACCCACCTCAGTACCTGTTTCCCAGAAACCCTCTAATAAACCAGAAAACTCGTTGTCTTTCGCCAGAAACTTGGCTGTAGCTACCACAATCTTGTCACCCCTAGCCTCTTCCCCATTAGCCTTAGCAGCAAAGCAAATAGCCGAGTCACCACAGGAAGATAACCGAGGTCTCCTCCTTCTGGTGCCTGTTGCAGCTGCATTAGGATGGGTGGTTTTCAACATCTTTGGTCCTGCATTGAACCAGATCAACAAAATGAGGAGCGATACGAATGTGACCGTCGTTGGACTCGGGCTTGGTGGGTTGTTAACTGCAGCTGCGTCTAGTGCTGTGTTTGCGCCGATTGCTTCAGCTGCAAGTGAAGTTGTTGAAGGTGAGGTCGTTGCCGCTTCAGGAGGTGTTCCGCTTCCGTTGATTGTGGCTGGTTGTGTGGCTTTACAGGTGGTGTTGTTCAGTACTATGCAATCAAAGTATGAGAAAGAGGGGGGTGCTAGTCATTAA

mRNA sequence

ATGGCTGCAACAACAACATCCTCCATAGCAATTCAAATCCCCAAATACCACTTCATCATCCGATCATCATCTTCAAAACCCACCTCAGTACCTGTTTCCCAGAAACCCTCTAATAAACCAGAAAACTCGTTGTCTTTCGCCAGAAACTTGGCTGTAGCTACCACAATCTTGTCACCCCTAGCCTCTTCCCCATTAGCCTTAGCAGCAAAGCAAATAGCCGAGTCACCACAGGAAGATAACCGAGGTCTCCTCCTTCTGGTGCCTGTTGCAGCTGCATTAGGATGGGTGGTTTTCAACATCTTTGGTCCTGCATTGAACCAGATCAACAAAATGAGGAGCGATACGAATGTGACCGTCGTTGGACTCGGGCTTGGTGGGTTGTTAACTGCAGCTGCGTCTAGTGCTGTGTTTGCGCCGATTGCTTCAGCTGCAAGTGAAGTTGTTGAAGGTGAGGTCGTTGCCGCTTCAGGAGGTGTTCCGCTTCCGTTGATTGTGGCTGGTTGTGTGGCTTTACAGGTGGTGTTGTTCAGTACTATGCAATCAAAGTATGAGAAAGAGGGGGGTGCTAGTCATTAA

Coding sequence (CDS)

ATGGCTGCAACAACAACATCCTCCATAGCAATTCAAATCCCCAAATACCACTTCATCATCCGATCATCATCTTCAAAACCCACCTCAGTACCTGTTTCCCAGAAACCCTCTAATAAACCAGAAAACTCGTTGTCTTTCGCCAGAAACTTGGCTGTAGCTACCACAATCTTGTCACCCCTAGCCTCTTCCCCATTAGCCTTAGCAGCAAAGCAAATAGCCGAGTCACCACAGGAAGATAACCGAGGTCTCCTCCTTCTGGTGCCTGTTGCAGCTGCATTAGGATGGGTGGTTTTCAACATCTTTGGTCCTGCATTGAACCAGATCAACAAAATGAGGAGCGATACGAATGTGACCGTCGTTGGACTCGGGCTTGGTGGGTTGTTAACTGCAGCTGCGTCTAGTGCTGTGTTTGCGCCGATTGCTTCAGCTGCAAGTGAAGTTGTTGAAGGTGAGGTCGTTGCCGCTTCAGGAGGTGTTCCGCTTCCGTTGATTGTGGCTGGTTGTGTGGCTTTACAGGTGGTGTTGTTCAGTACTATGCAATCAAAGTATGAGAAAGAGGGGGGTGCTAGTCATTAA

Protein sequence

MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQSKYEKEGGASH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08811.1Spo08811.1mRNA


Homology
[Close]
BLAST of Spo08811.1 vs. NCBI nr
Match: gi|902155686|gb|KNA05935.1| (hypothetical protein SOVF_185730 [Spinacia oleracea])

HSP 1 Score: 348.2 bits (892), Expect = 9.100e-93
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 

		  

Query: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60
           MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL
Sbjct: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60

Query: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120
           ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV
Sbjct: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120

Query: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180
           GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ
Sbjct: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180

Query: 181 SKYEKEGGASH 192
           SKYEKEGGASH
Sbjct: 181 SKYEKEGGASH 191
[Close]
BLAST of Spo08811.1 vs. NCBI nr
Match: gi|731368103|ref|XP_010695963.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.0 bits (515), Expect = 4.700e-49
Identity = 127/186 (68.28%), Postives = 146/186 (78.49%), Query Frame = 1 

		  

Query: 3   ATTTSSIAIQIPKYHFIIRSSSS-KPTSVPVSQ--KPSNKPENSLSFARNLAVATTILSP 62
           A TT S  I  PKYHFII SSSS KP+S+PVSQ  KPS+KP  S S A+ LA+A+T LSP
Sbjct: 2   AATTFSTTIHNPKYHFIISSSSSSKPSSLPVSQPLKPSSKPGKSWSLAKTLALASTALSP 61

Query: 63  LASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTV 122
           LASSP+ALAAKQIAESPQEDNRGL LLVPVAAA+GWV++NI GPALNQINKMRS+  ++V
Sbjct: 62  LASSPIALAAKQIAESPQEDNRGLALLVPVAAAVGWVLYNILGPALNQINKMRSE-KMSV 121

Query: 123 VGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVP-LPLIVAGCVALQVVLFST 182
           VGLGLGGL+T AASSA+  P ASA +EV+E E     G    L LIVA  VAL+VVL S+
Sbjct: 122 VGLGLGGLIT-AASSALLVPSASAVTEVIENEGAGNGGNQGLLALIVAAAVALEVVLLSS 181

Query: 183 MQSKYE 185
           MQSK E
Sbjct: 182 MQSKSE 185
[Close]
BLAST of Spo08811.1 vs. NCBI nr
Match: gi|568861014|ref|XP_006484003.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Citrus sinensis])

HSP 1 Score: 97.8 bits (242), Expect = 2.100e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1 

		  

Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGATKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188
[Close]
BLAST of Spo08811.1 vs. NCBI nr
Match: gi|567891295|ref|XP_006438168.1| (hypothetical protein CICLE_v10032789mg [Citrus clementina])

HSP 1 Score: 97.8 bits (242), Expect = 2.100e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1 

		  

Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188
[Close]
BLAST of Spo08811.1 vs. NCBI nr
Match: gi|985446439|ref|XP_015385272.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Citrus sinensis])

HSP 1 Score: 93.2 bits (230), Expect = 5.300e-16
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1 

		  

Query: 31  PVSQKPSNKPENSLSFARNLAVATTILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVA 90
           P + +   KP+ S S      +A  I S LA S  ALAAKQ+A++ + DNRGL LL+P+ 
Sbjct: 48  PTTWESCRKPDTSSSL-----MAGAIFSTLAYSDPALAAKQLADASEGDNRGLALLLPII 107

Query: 91  AALGWVVFNIFGPALNQINKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEG 150
            A+ WV++NI GPALNQIN+MR++  + V+GLGLGG     ASS    P A+A+   + G
Sbjct: 108 PAILWVLYNILGPALNQINRMRNEKGI-VIGLGLGGF---TASSLFTVPSATASEMAMLG 167

Query: 151 EVVAASGGVPLPLIVAGCVALQVVLFSTMQ 181
           E  + S G+ L  IVA   AL  VL++ +Q
Sbjct: 168 EASSDSRGLLLLAIVA--PALLWVLYNILQ 186
[Close]
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFA4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_185730 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.300e-93
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 

		  

Query: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60
           MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL
Sbjct: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60

Query: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120
           ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV
Sbjct: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120

Query: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180
           GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ
Sbjct: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180

Query: 181 SKYEKEGGASH 192
           SKYEKEGGASH
Sbjct: 181 SKYEKEGGASH 191
[Close]
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8A9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176840 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.300e-49
Identity = 127/186 (68.28%), Postives = 146/186 (78.49%), Query Frame = 1 

		  

Query: 3   ATTTSSIAIQIPKYHFIIRSSSS-KPTSVPVSQ--KPSNKPENSLSFARNLAVATTILSP 62
           A TT S  I  PKYHFII SSSS KP+S+PVSQ  KPS+KP  S S A+ LA+A+T LSP
Sbjct: 2   AATTFSTTIHNPKYHFIISSSSSSKPSSLPVSQPLKPSSKPGKSWSLAKTLALASTALSP 61

Query: 63  LASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTV 122
           LASSP+ALAAKQIAESPQEDNRGL LLVPVAAA+GWV++NI GPALNQINKMRS+  ++V
Sbjct: 62  LASSPIALAAKQIAESPQEDNRGLALLVPVAAAVGWVLYNILGPALNQINKMRSE-KMSV 121

Query: 123 VGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVP-LPLIVAGCVALQVVLFST 182
           VGLGLGGL+T AASSA+  P ASA +EV+E E     G    L LIVA  VAL+VVL S+
Sbjct: 122 VGLGLGGLIT-AASSALLVPSASAVTEVIENEGAGNGGNQGLLALIVAAAVALEVVLLSS 181

Query: 183 MQSKYE 185
           MQSK E
Sbjct: 182 MQSKSE 185
[Close]
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A067GTU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029024mg PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1 

		  

Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188
[Close]
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: V4SU74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032789mg PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1 

		  

Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188
[Close]
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A067G0Z7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029696mg PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.800e-16
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1 

		  

Query: 31  PVSQKPSNKPENSLSFARNLAVATTILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVA 90
           P + +   KP+ S S      +A  I S LA S  ALAAKQ+A++ + DNRGL LL+P+ 
Sbjct: 48  PTTWESCRKPDTSSSL-----MAGAIFSTLAYSDPALAAKQLADASEGDNRGLALLLPII 107

Query: 91  AALGWVVFNIFGPALNQINKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEG 150
            A+ WV++NI GPALNQIN+MR++  + V+GLGLGGL   AASS    P A A+   + G
Sbjct: 108 PAILWVLYNILGPALNQINRMRNEKGI-VIGLGLGGL---AASSFFTVPSAPASEMAMLG 167

Query: 151 EVVAASGGVPLPLIVAGCVA 171
           E  + S G+ L  IVA  ++
Sbjct: 168 EASSDSRGLLLLAIVASLLS 178
[Close]
BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-16
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 1 

		  

Query: 1   MAATTTSSIAIQIPKYHFI----IRSSSSKPTSVPVSQKPSNKPENSLSFARNL-----A 60
           MAAT  +++A+   K   +      S+S KPTS P+S  P     + L    +      A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  VATTILSPLASSPLALAAKQIAESPQE----DNRGLLLLVPVAAALGWVVFNIFGPALNQ 120
           +A  + + L S   A A +Q+A+   E    DNRGL LL+P+  ALGWV+FNI  PALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAG 180
           INKMR++    +VGLGL GL T+    A   P A AASE    E+   S      L++  
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLA--TPEAQAASE----EIARGSDNRGTLLLLVV 180
[Close]
BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.000e-11
Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 1 

		  

Query: 3   ATTTSSIAIQIPKYHFIIRSSSSKP-TSVPVSQKPSNKPENSLSFARNLAVATTILSPLA 62
           AT T  +++  P    +   + SKP  S+P   KP     N      + A+A  + S L+
Sbjct: 6   ATATKCMSLN-PSPPKLQNQTKSKPFISLPTPPKP-----NVSLAVTSTALAGAVFSSLS 65

Query: 63  SSPLALAAKQIAE----SPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNV 122
            S  ALA +QIA+    +   DNRGL LL+P+  A+ WV++NI  PA+NQ+NKMR    +
Sbjct: 66  YSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGI 125

Query: 123 TVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFS 181
            VVGLG+GG L AA+      P A AA+E       A+S      L++    AL  VL++
Sbjct: 126 -VVGLGIGGGL-AASGLLTPPPEAYAAAEA----AAASSDSRGQLLLIVVTPALLWVLYN 176
[Close]
BLAST of Spo08811.1 vs. TAIR (Arabidopsis)
Match: AT1G67740.1 (photosystem II BY)

HSP 1 Score: 71.6 bits (174), Expect = 5.800e-13
Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 1 

		  

Query: 3   ATTTSSIAIQIPKYHFIIRSSSSKP-TSVPVSQKPSNKPENSLSFARNLAVATTILSPLA 62
           AT T  +++  P    +   + SKP  S+P   KP     N      + A+A  + S L+
Sbjct: 6   ATATKCMSLN-PSPPKLQNQTKSKPFISLPTPPKP-----NVSLAVTSTALAGAVFSSLS 65

Query: 63  SSPLALAAKQIAE----SPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNV 122
            S  ALA +QIA+    +   DNRGL LL+P+  A+ WV++NI  PA+NQ+NKMR    +
Sbjct: 66  YSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGI 125

Query: 123 TVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFS 181
            VVGLG+GG L AA+      P A AA+E       A+S      L++    AL  VL++
Sbjct: 126 -VVGLGIGGGL-AASGLLTPPPEAYAAAEA----AAASSDSRGQLLLIVVTPALLWVLYN 176
The following BLAST results are available for this feature:
BLAST of Spo08811.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902155686|gb|KNA05935.1|9.1e-93100.hypothetical protein SOVF_1857... [more]
gi|731368103|ref|XP_010695963.1|4.7e-4968.2PREDICTED: photosystem II core... [more]
gi|568861014|ref|XP_006484003.1|2.1e-1741.6PREDICTED: photosystem II core... [more]
gi|567891295|ref|XP_006438168.1|2.1e-1741.6hypothetical protein CICLE_v10... [more]
gi|985446439|ref|XP_015385272.1|5.3e-1644.6PREDICTED: photosystem II core... [more]
back to top
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QFA4_SPIOL6.3e-93100.Uncharacterized protein OS=Spi... [more]
A0A0J8B8A9_BETVU3.3e-4968.2Uncharacterized protein OS=Bet... [more]
A0A067GTU3_CITSI1.5e-1741.6Uncharacterized protein OS=Cit... [more]
V4SU74_9ROSI1.5e-1741.6Uncharacterized protein OS=Cit... [more]
A0A067G0Z7_CITSI4.8e-1645.7Uncharacterized protein OS=Cit... [more]
back to top
BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_SPIOL1.1e-1638.3Photosystem II core complex pr... [more]
PSBY_ARATH1.0e-1136.6Photosystem II core complex pr... [more]
back to top
BLAST of Spo08811.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G67740.15.8e-1336.6photosystem II BY[more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009388Photosystem II PsbYHAMAPMF_00717PSII_PsbYcoord: 79..113
score: 11
IPR009388Photosystem II PsbYPFAMPF06298PsbYcoord: 79..111
score: 2.8
NoneNo IPR availablePANTHERPTHR34790FAMILY NOT NAMEDcoord: 11..181
score: 6.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0009414 response to water deprivation
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0001824 blastocyst development
biological_process GO:2001234 negative regulation of apoptotic signaling pathway
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0001558 regulation of cell growth
biological_process GO:0007088 regulation of mitotic nuclear division
biological_process GO:0050684 regulation of mRNA processing
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0009987 cellular process
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0050992 dimethylallyl diphosphate biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0008152 metabolic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042742 defense response to bacterium
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0042793 plastid transcription
biological_process GO:0006364 rRNA processing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0031408 oxylipin biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0009416 response to light stimulus
biological_process GO:1901401 regulation of tetrapyrrole metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0019216 regulation of lipid metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006457 protein folding
biological_process GO:0009058 biosynthetic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006468 protein phosphorylation
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009658 chloroplast organization
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0000413 protein peptidyl-prolyl isomerization
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005634 nucleus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009523 photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004693 cyclin-dependent protein serine/threonine kinase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0046914 transition metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo213610.85Barchart | Table
Spo227590.83Barchart | Table
Spo050130.79Barchart | Table
Spo230350.78Barchart | Table
Spo120050.77Barchart | Table
Spo240460.77Barchart | Table
Spo033350.76Barchart | Table
Spo081900.76Barchart | Table
Spo002560.75Barchart | Table
Spo150790.74Barchart | Table
Spo086540.74Barchart | Table
Spo223720.73Barchart | Table
Spo008950.73Barchart | Table
Spo206510.73Barchart | Table
Spo036380.73Barchart | Table
Spo170000.72Barchart | Table
Spo234150.72Barchart | Table
Spo055080.72Barchart | Table
Spo194310.72Barchart | Table
Spo178600.72Barchart | Table
Spo046730.71Barchart | Table
Spo093780.70Barchart | Table
Spo175770.70Barchart | Table
Spo100920.70Barchart | Table
Spo116300.70Barchart | Table
Spo232990.70Barchart | Table
Spo144050.70Barchart | Table
Spo281860.70Barchart | Table
Spo169300.69Barchart | Table
Spo076030.69Barchart | Table
Spo126820.69Barchart | Table
Spo193930.69Barchart | Table
Spo208370.69Barchart | Table
Spo238000.69Barchart | Table
Spo240700.69Barchart | Table
Spo300010.68Barchart | Table
Spo029790.68Barchart | Table
Spo253240.68Barchart | Table
Spo219560.67Barchart | Table
Spo008030.67Barchart | Table
Spo194420.67Barchart | Table
Spo092320.67Barchart | Table
Spo026490.67Barchart | Table
Spo188440.66Barchart | Table
Spo080100.66Barchart | Table
Spo073760.66Barchart | Table
Spo003140.66Barchart | Table
Spo071950.66Barchart | Table
Spo229210.66Barchart | Table
Spo021920.66Barchart | Table
Spo257210.66Barchart | Table
Spo258530.66Barchart | Table
Spo259530.66Barchart | Table
Spo144730.66Barchart | Table
Spo095540.66Barchart | Table
Spo282670.65Barchart | Table
Spo244250.65Barchart | Table
Spo041230.65Barchart | Table
Spo272500.65Barchart | Table
Spo072370.65Barchart | Table