Spo08524 (gene)

Overview
NameSpo08524
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPsaA
Locationchr1 : 18742084 .. 18745575 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGTAGATTTCTTCGCAATCCCATGAGAATCAAAAGAGGTGAGTTTTTGAGAGGTGAGCTGCCCAAGGATGTGGTCGACAACGGTGGAGATTTCCCGGTTTTCAGATTCGAATTTGAGGCGGGTGACACCAGTCCAGAGGTGGCGCCATCGGTGAGATAAAACGGAAGTGGCGGCGGCAGAATTGATTGAGAGGAAAGAGAGAATTTCAGTGAGGATGCAGTTGGGAAGTGAGCTTCTTCATGGCGGAAACTGTTGAATTGTTCATCTTTGGATTTCATCTTTGTGAGGCAGATTTTGTAGCTCTCAACCTCTTCCATTTTGAGTTCCAGTGTGCGAATTAGGGTTCACCTTATTTTCAATTTGTGGGTTTTGATAATAGGAAGTACGGAGTAATTTTTTTGTTTGTTTAAAGTTTGATTTTTATCACCATTTATCTAACTCTAAAAAGGGCTTTGAATAAAAAAGAAGGTCCGTTGAGCGCCACACGTCTATGTCATAATAGATCCGAACATTTGCCCTGGATCATAATTGCTCTAGTAAATAACTAAAAAAAATAGTGAGATGGGAGATAGAAGTGAAAGAAAAATAAAAAAAAAAATATCTCCGAGGTTCACCAATTATTTGAATGGTGGCAGGTCTCTTTGTATGTCTTGTCCAGAAAGAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAGAAGTGAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACTGGTCATTTTTCAAGAACAATAGCTAAGGGCCCTGAAACTACTACATGGATCTGGAACCTACATGTTGATGCTCACGATTTCGATAGCCATACCAACCAGTGGCGGATCCAGGATTTGAGAAATGGGGAAACGAATAAAAATTCTTATAGTCTACCAACGGGAAAAAAGTTATGGGTCCAATCCCGCTATAAAAAGGATTCAAAAAAGGGTTTACTTTCGGTATTTAAAAAGGCGTCAAAATTACATTCGTTCTAATATTTAGTCCAAATCATTAAAATCTAAGCCCACCACTCACTTCATTTATATTATCAACGATTTACTAGTCTTTCAGTATATTCGATAAACAATAGAACAATTAGAAAAATTAAGGGAGTAATGAACTATGTATATAAAAACCATTAATGAAATTGAAATCATATTAAATTTCAATAGAAATGAAAATATTATTCTTCACTGTGTATATGACATCTAGCATTGTGTTCACAAATTTTGTTTTTTAAAAATTATATAACCCATGCAACTAATTTTAGCTAGGTACAAAAGTGAAATTCACAAAAATGATATATCTATGTATTTGAAATTAAATGAGTGAAAAAAGAAACTCACAAATGATATAAGTAAAATCATTAAAGAGTTGAAAAAAGGGAAGACTGAAATCAATAAATAGTTAAACGGTGGAAAAACTATTAAGTGCTAAACAATGAGAAAGTAAAACATTTAGGAGCTAAATAAATGGGAAAAAAAAGTGGTGAAAAATAAGAGTTACCAAGACTCGAACCCTGCATTTCTTTGTTCCAACATAATGAGGTTAAATCCTCAACCAACTGAAACAAACTCATTTATGTGATACATAATAGGAAATTTCAAATATATACAAAAAGTGAAAAAAATTTATACATTTTTCCGCGGATCTAGGGAATGGGGGGGGGTGCCCCCCCCCCCNAAGTGAAAAAAATTTATACATTTTTCCGCGGATCTAGGGAATGGGGGGGGGTGCCCCCCCCCCCCAAATTCGCCACTGATACTAGCCATTTGGAGGAGATCTCCCGAAAAAAATTTAGTGCCCATTTCGGTCAACTCTCCATTATCTTTCTTTGGCTGAGTGGTACTCCCTCCGTATTNTTAGTGCCCATTTCGGTCAACTCTCCATTATCTTTCTTTGGCTGAGTGGTACTCCCTCCGTATTTATTTAAGGGATAAACTTGGCCGAGCACGGGTATTAAGAAGAAGAATTGAATGAAATAAAATAATAAAGCAAGTGGGGTTGGGTAGATATTTTAATAAGTAAACAAGTGAGGACCATGTCATTTTGGGGGATGGGAGGTGTAGTGGGTTTATAAAATTATTTGTTTAATAAGATGGTGGGTCATAGGATAAATTAGATGTATTATTTAATTAGATGGTGGGATTGATATGTTACTAAAAATGGTAAGTTTATCTCTTAAATAAATACGGCCGGAAAAATAAGTGTATCCCTTAAATAAATACAGTTGGAGTATGTATTTCTGCGGTGCCCGTTTTTCCAATTATGAAGCATGGCTAAGCGATCCTACTCATATTGGGCCTAGTGCCCAAGTAGTTTTGCCGATAGTGGGTCAAGAAATATTGAATGGTGATATAGGGGGAGGTTTCTGAGGAATACAAATAACCTCTGGGTTTTTTCAAATTTATCGAGCATCTGGAATAACTAGTGAATTGCAACTTTATTGTACCGCAATTGGTGCATTGGTCTTTGCAGCATTAATGTTTTTTGCTGGTTGGTTCCATTACTACAAAGCGGCTCTAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGTATCTTTACCGATTAACCAATTTCTAAATGTTGGAGTAGATCCTAAAGAGATATCGCTTCCTCATGAATTTATCTTGAATCGAGATCTTTTGGCTCAACTTTATCCCAGTTTTGCCGAAGGACCCCGTTTTTCACTTTGAATTGGTCAAAATATGCGGACTTTCTTACTTTTCGTGGAGGATTAGACCCATTAACTGGAGGTTTGTGGCTGACCGATACTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGATAGCGGGTCATATGTATAGAACGAACTGGGGAATTGGGCATGGTCTAAAAGATATTTTAGAGTAAAGGTCCATTTACGAGCCATGGACATAAAGGCTTAAATGAGATCTTAACAACGTCATGGCATGCTCAATTAGCTCTTAACTAGCTATGTTAGATTCTTTAACCATCGTTGTAGCTCATCATATGTATGCGATGCCCCCTTATCCATATCTAGCTACTGACTATGGTACCCAACTTTCATTGTTTACACATCACATGTGGGTTGGTGGATTTCTCATAGTTGGTGCTCCTGCGCATGCGGCTAGTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGACCTATTAGACCGTGTTCTTAGACATCGCGATGTAATCATATCACATCCTAACTGGGCATGTATATTTCTAGGATTTCACAGTTTTGATTTATATATTCATAATGATACCATGAGTGCTTTAGGGCGTCCTCAAGATATGTTTTCAGATACCGCTATACAATTACAACATGTCTTTGCTCAATGGAAGGGAAGAGGTGAAGAACATTGCGATAATATCACTTTTTGTGTCCCCCTAG

mRNA sequence

ATGAAACGTAGATTTCTTCGCAATCCCATGAGAATCAAAAGAGGTGAGTTTTTGAGAGGTGAGCTGCCCAAGGATGTGGTCGACAACGGTGGAGATTTCCCGGTTTTCAGATTCGAATTTGAGGCGGGTGACACCAGTCCAGAGGTGGCGCCATCGAAAGAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAGAAGTGAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACTGATACCGCTATACAATTACAACATGTCTTTGCTCAATGGAAGGGAAGAGGTGAAGAACATTGCGATAATATCACTTTTTGTGTCCCCCTAG

Coding sequence (CDS)

ATGAAACGTAGATTTCTTCGCAATCCCATGAGAATCAAAAGAGGTGAGTTTTTGAGAGGTGAGCTGCCCAAGGATGTGGTCGACAACGGTGGAGATTTCCCGGTTTTCAGATTCGAATTTGAGGCGGGTGACACCAGTCCAGAGGTGGCGCCATCGAAAGAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAGAAGTGAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCGTTTGAGGCATGGGCCAAACTGATACCGCTATACAATTACAACATGTCTTTGCTCAATGGAAGGGAAGAGGTGAAGAACATTGCGATAATATCACTTTTTGTGTCCCCCTAG

Protein sequence

MKRRFLRNPMRIKRGEFLRGELPKDVVDNGGDFPVFRFEFEAGDTSPEVAPSKEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAKLIPLYNYNMSLLNGREEVKNIAIISLFVSP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08524.1Spo08524.1mRNA


Homology
[Close]
BLAST of Spo08524.1 vs. NCBI nr
Match: gi|1012321961|gb|KYP34360.1| (Photosystem I P700 chlorophyll a apoprotein A1 family [Cajanus cajan])

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-8
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 

		  

Query: 44 DTSPEVAPSKEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          +T P+V   KEEDSMIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 14 NTPPDVV-WKEEDSMIIRSPEPEVKILVDRDPIKTSFEEWAK 54
[Close]
BLAST of Spo08524.1 vs. NCBI nr
Match: gi|1012324803|gb|KYP36760.1| (Photosystem I P700 chlorophyll a apoprotein A1 family [Cajanus cajan])

HSP 1 Score: 66.6 bits (161), Expect = 3.200e-8
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEEDSMIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 12 KEEDSMIIRSPEPEVKILVDRDPIKTSFEEWAK 44
[Close]
BLAST of Spo08524.1 vs. NCBI nr
Match: gi|870868638|gb|KMT19441.1| (hypothetical protein BVRB_1g010710 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.9 bits (159), Expect = 5.400e-8
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEEDSMIIRSPEPEVKILVDRDPVKTSFE WA+
Sbjct: 12 KEEDSMIIRSPEPEVKILVDRDPVKTSFEEWAR 44
[Close]
BLAST of Spo08524.1 vs. NCBI nr
Match: gi|944542082|ref|YP_009176005.1| (photosystem I P700 apoprotein A1 (chloroplast) [Ficus racemosa])

HSP 1 Score: 64.3 bits (155), Expect = 1.600e-7
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEEDSMIIRSPEPEVKILVD+DP+KTSFE WA+
Sbjct: 13 KEEDSMIIRSPEPEVKILVDKDPIKTSFEEWAR 45
[Close]
BLAST of Spo08524.1 vs. NCBI nr
Match: gi|223048776|gb|ACM80266.1| (PsaA, partial (chloroplast) [Arundinaria gigantea])

HSP 1 Score: 63.5 bits (153), Expect = 2.700e-7
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEED MIIRSPEPEVKI+VDRDPVKTSFE WAK
Sbjct: 11 KEEDLMIIRSPEPEVKIVVDRDPVKTSFEEWAK 43
[Close]
BLAST of Spo08524.1 vs. UniProtKB/TrEMBL
Match: A0A151QVM2_CAJCA (Photosystem I P700 chlorophyll a apoprotein A1 family OS=Cajanus cajan GN=KK1_044698 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-8
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 

		  

Query: 44 DTSPEVAPSKEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          +T P+V   KEEDSMIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 14 NTPPDVV-WKEEDSMIIRSPEPEVKILVDRDPIKTSFEEWAK 54
[Close]
BLAST of Spo08524.1 vs. UniProtKB/TrEMBL
Match: A0A151R2J4_CAJCA (Photosystem I P700 chlorophyll a apoprotein A1 family OS=Cajanus cajan GN=KK1_042105 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-8
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEEDSMIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 12 KEEDSMIIRSPEPEVKILVDRDPIKTSFEEWAK 44
[Close]
BLAST of Spo08524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FUS3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g010710 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.800e-8
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEEDSMIIRSPEPEVKILVDRDPVKTSFE WA+
Sbjct: 12 KEEDSMIIRSPEPEVKILVDRDPVKTSFEEWAR 44
[Close]
BLAST of Spo08524.1 vs. UniProtKB/TrEMBL
Match: A0A0N9YAK6_9ROSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Ficus racemosa GN=psaA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.100e-7
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEEDSMIIRSPEPEVKILVD+DP+KTSFE WA+
Sbjct: 13 KEEDSMIIRSPEPEVKILVDKDPIKTSFEEWAR 45
[Close]
BLAST of Spo08524.1 vs. UniProtKB/TrEMBL
Match: D9Z3T2_9POAL (PsaA (Fragment) OS=Drepanostachyum hookerianum GN=psaA PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.900e-7
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 

		  

Query: 53 KEEDSMIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          KEED MIIRSPEPEVKI+VDRDPVKTSFE WAK
Sbjct: 11 KEEDLMIIRSPEPEVKIVVDRDPVKTSFEEWAK 43
[Close]
BLAST of Spo08524.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 58 MIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          MIIRSPEPEVKILVDRDPVKTSFEAWAK
Sbjct: 1  MIIRSPEPEVKILVDRDPVKTSFEAWAK 28
[Close]
BLAST of Spo08524.1 vs. ExPASy Swiss-Prot
Match: PSAA_CITSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.100e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 

		  

Query: 58 MIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          MIIRSPEPEVKILVDRDPVKTSFE WAK
Sbjct: 1  MIIRSPEPEVKILVDRDPVKTSFEEWAK 28
[Close]
BLAST of Spo08524.1 vs. ExPASy Swiss-Prot
Match: PSAA_COFAR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.100e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 

		  

Query: 58 MIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          MIIRSPEPEVKILVDRDPVKTSFE WAK
Sbjct: 1  MIIRSPEPEVKILVDRDPVKTSFEEWAK 28
[Close]
BLAST of Spo08524.1 vs. ExPASy Swiss-Prot
Match: PSAA_LEPVR (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lepidium virginicum GN=psaA PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.300e-8
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 

		  

Query: 58 MIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          MIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEEWAK 28
[Close]
BLAST of Spo08524.1 vs. ExPASy Swiss-Prot
Match: PSAA_DRANE (Photosystem I P700 chlorophyll a apoprotein A1 OS=Draba nemorosa GN=psaA PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.300e-8
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 

		  

Query: 58 MIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          MIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEEWAK 28
[Close]
BLAST of Spo08524.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 57.8 bits (138), Expect = 5.200e-9
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 

		  

Query: 58 MIIRSPEPEVKILVDRDPVKTSFEAWAK 86
          MIIRSPEPEVKILVDRDP+KTSFE WAK
Sbjct: 1  MIIRSPEPEVKILVDRDPIKTSFEEWAK 28
The following BLAST results are available for this feature:
BLAST of Spo08524.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1012321961|gb|KYP34360.1|1.9e-880.9Photosystem I P700 chlorophyll... [more]
gi|1012324803|gb|KYP36760.1|3.2e-893.9Photosystem I P700 chlorophyll... [more]
gi|870868638|gb|KMT19441.1|5.4e-893.9hypothetical protein BVRB_1g01... [more]
gi|944542082|ref|YP_009176005.1|1.6e-787.8photosystem I P700 apoprotein ... [more]
gi|223048776|gb|ACM80266.1|2.7e-790.9PsaA, partial (chloroplast) [A... [more]
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BLAST of Spo08524.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A151QVM2_CAJCA1.3e-880.9Photosystem I P700 chlorophyll... [more]
A0A151R2J4_CAJCA2.2e-893.9Photosystem I P700 chlorophyll... [more]
A0A0J8FUS3_BETVU3.8e-893.9Uncharacterized protein OS=Bet... [more]
A0A0N9YAK6_9ROSA1.1e-787.8Photosystem I P700 chlorophyll... [more]
D9Z3T2_9POAL1.9e-790.9PsaA (Fragment) OS=Drepanostac... [more]
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BLAST of Spo08524.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAA_SPIOL1.9e-8100.Photosystem I P700 chlorophyll... [more]
PSAA_CITSI7.1e-896.4Photosystem I P700 chlorophyll... [more]
PSAA_COFAR7.1e-896.4Photosystem I P700 chlorophyll... [more]
PSAA_LEPVR9.3e-892.8Photosystem I P700 chlorophyll... [more]
PSAA_DRANE9.3e-892.8Photosystem I P700 chlorophyll... [more]
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BLAST of Spo08524.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00350.15.2e-992.8Photosystem I, PsaA/PsaB prote... [more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0044425 membrane part
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0005840 ribosome
cellular_component GO:0009579 thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression