Spo08478 (gene)

Overview
NameSpo08478
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase family protein
Locationchr1 : 9460317 .. 9460868 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACAAGGCTATTCAATCGAACTTTACTTCGATCCAGCCCTAGAAAACCAAATCCTCAAAGCTTGGAACGTCTTAGCTCGTCGCCAAATCAGTACCCAGCTTATAGAAATCGAATCCCGGCCCCACATAACCCTTTTCTCATCGCCATTTTTGGAGCCATCAAAAGTTGAACCTTTAATCAAGTCATTTGCAGCAAAACAAGAACCCTTACTCCTGAATTTCTCCTCAATTGGGTCACTCCCAAATGAGGGTAACCTCCTTTTTCTCTCTCCTACCCCTACATTGTCTCTCCTCCAATTCCATTCCCAGCTCTGTGATCTGCTGAAGAAAGAAGGGGTTGAAATTGGGGAAGATTATCGAGTCGATTCGTGGGTGCCCGTCTGCCCGGTTGCGCAGGAGGTGCCGAAGAATCGAATGGCCGAAGCGTTTAGTGTGCTGAGGGATTTGAAGTTGCCTATTGGTGGGTATGCTATGGATATTGGGTTAGTTGAGTTTTCACCGGTGCGGGAGTTTTTCTCTTTTATTCTTGGCAACACTTTAGATGGGTAA

mRNA sequence

ATGTCACAAGGCTATTCAATCGAACTTTACTTCGATCCAGCCCTAGAAAACCAAATCCTCAAAGCTTGGAACGTCTTAGCTCGTCGCCAAATCAGTACCCAGCTTATAGAAATCGAATCCCGGCCCCACATAACCCTTTTCTCATCGCCATTTTTGGAGCCATCAAAAGTTGAACCTTTAATCAAGTCATTTGCAGCAAAACAAGAACCCTTACTCCTGAATTTCTCCTCAATTGGGTCACTCCCAAATGAGGGTAACCTCCTTTTTCTCTCTCCTACCCCTACATTGTCTCTCCTCCAATTCCATTCCCAGCTCTGTGATCTGCTGAAGAAAGAAGGGGTTGAAATTGGGGAAGATTATCGAGTCGATTCGTGGGTGCCCGTCTGCCCGGTTGCGCAGGAGGTGCCGAAGAATCGAATGGCCGAAGCGTTTAGTGTGCTGAGGGATTTGAAGTTGCCTATTGGTGGGTATGCTATGGATATTGGGTTAGTTGAGTTTTCACCGGTGCGGGAGTTTTTCTCTTTTATTCTTGGCAACACTTTAGATGGGTAA

Coding sequence (CDS)

ATGTCACAAGGCTATTCAATCGAACTTTACTTCGATCCAGCCCTAGAAAACCAAATCCTCAAAGCTTGGAACGTCTTAGCTCGTCGCCAAATCAGTACCCAGCTTATAGAAATCGAATCCCGGCCCCACATAACCCTTTTCTCATCGCCATTTTTGGAGCCATCAAAAGTTGAACCTTTAATCAAGTCATTTGCAGCAAAACAAGAACCCTTACTCCTGAATTTCTCCTCAATTGGGTCACTCCCAAATGAGGGTAACCTCCTTTTTCTCTCTCCTACCCCTACATTGTCTCTCCTCCAATTCCATTCCCAGCTCTGTGATCTGCTGAAGAAAGAAGGGGTTGAAATTGGGGAAGATTATCGAGTCGATTCGTGGGTGCCCGTCTGCCCGGTTGCGCAGGAGGTGCCGAAGAATCGAATGGCCGAAGCGTTTAGTGTGCTGAGGGATTTGAAGTTGCCTATTGGTGGGTATGCTATGGATATTGGGTTAGTTGAGTTTTCACCGGTGCGGGAGTTTTTCTCTTTTATTCTTGGCAACACTTTAGATGGGTAA

Protein sequence

MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPLIKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDYRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNTLDG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08478.1Spo08478.1mRNA


Homology
[Close]
BLAST of Spo08478.1 vs. NCBI nr
Match: gi|902240014|gb|KNA25837.1| (hypothetical protein SOVF_002910 [Spinacia oleracea])

HSP 1 Score: 368.6 bits (945), Expect = 6.200e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL
Sbjct: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY
Sbjct: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT
Sbjct: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180

Query: 181 LDG 184
           LDG
Sbjct: 181 LDG 183
[Close]
BLAST of Spo08478.1 vs. NCBI nr
Match: gi|731376311|ref|XP_010667527.1| (PREDICTED: uncharacterized protein LOC104884549 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 340.9 bits (873), Expect = 1.400e-90
Identity = 164/183 (89.62%), Postives = 179/183 (97.81%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQ+LKAWNVLARRQ+STQLIEIESRPHITLFSSPF++PSK+EP+
Sbjct: 1   MSQGYSIELYFDPALENQVLKAWNVLARRQLSTQLIEIESRPHITLFSSPFIDPSKLEPI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGN-LLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGED 120
           IK+FAAKQEPL LNFSSIGSLPNEGN LLFLSPTPTLSL+QFHSQLCDLL+KEGV+IG+D
Sbjct: 61  IKNFAAKQEPLQLNFSSIGSLPNEGNNLLFLSPTPTLSLIQFHSQLCDLLRKEGVDIGDD 120

Query: 121 YRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGN 180
           YRVDSW+PVCPVAQ+VPKNR+AEAFSVLRDLKLP+ GYAMDIGLVEFSPVREFFSFILGN
Sbjct: 121 YRVDSWIPVCPVAQDVPKNRIAEAFSVLRDLKLPVNGYAMDIGLVEFSPVREFFSFILGN 180

Query: 181 TLD 183
            LD
Sbjct: 181 NLD 183
[Close]
BLAST of Spo08478.1 vs. NCBI nr
Match: gi|147844702|emb|CAN82133.1| (hypothetical protein VITISV_002643 [Vitis vinifera])

HSP 1 Score: 317.4 bits (812), Expect = 1.600e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 61  IKSFAGKQEPLXLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182
[Close]
BLAST of Spo08478.1 vs. NCBI nr
Match: gi|225452536|ref|XP_002279925.1| (PREDICTED: uncharacterized protein LOC100249281 [Vitis vinifera])

HSP 1 Score: 316.6 bits (810), Expect = 2.800e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 61  IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182
[Close]
BLAST of Spo08478.1 vs. NCBI nr
Match: gi|296087705|emb|CBI34961.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 316.6 bits (810), Expect = 2.800e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LD 183
           L+
Sbjct: 255 LE 256
[Close]
BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3Y8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002910 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.300e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL
Sbjct: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY
Sbjct: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT
Sbjct: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180

Query: 181 LDG 184
           LDG
Sbjct: 181 LDG 183
[Close]
BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B616_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_009350 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.700e-91
Identity = 164/183 (89.62%), Postives = 179/183 (97.81%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQ+LKAWNVLARRQ+STQLIEIESRPHITLFSSPF++PSK+EP+
Sbjct: 1   MSQGYSIELYFDPALENQVLKAWNVLARRQLSTQLIEIESRPHITLFSSPFIDPSKLEPI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGN-LLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGED 120
           IK+FAAKQEPL LNFSSIGSLPNEGN LLFLSPTPTLSL+QFHSQLCDLL+KEGV+IG+D
Sbjct: 61  IKNFAAKQEPLQLNFSSIGSLPNEGNNLLFLSPTPTLSLIQFHSQLCDLLRKEGVDIGDD 120

Query: 121 YRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGN 180
           YRVDSW+PVCPVAQ+VPKNR+AEAFSVLRDLKLP+ GYAMDIGLVEFSPVREFFSFILGN
Sbjct: 121 YRVDSWIPVCPVAQDVPKNRIAEAFSVLRDLKLPVNGYAMDIGLVEFSPVREFFSFILGN 180

Query: 181 TLD 183
            LD
Sbjct: 181 NLD 183
[Close]
BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: A5AGR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002643 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.100e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 61  IKSFAGKQEPLXLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182
[Close]
BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: D7TWT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.000e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LD 183
           L+
Sbjct: 255 LE 256
[Close]
BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: M5X3Z2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.800e-82
Identity = 148/182 (81.32%), Postives = 170/182 (93.41%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP+K+E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IK+FA+KQEPL L+FSSIGSLP++ N+LFLSPTP++SLLQF SQLC+ +K+EGVEIGE+Y
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSWVP C VAQEVPK RMAEAF VLRDLKLP+ GYAMDIGLVEFSPVRE FSF+LGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LD 183
           ++
Sbjct: 181 VE 182
[Close]
BLAST of Spo08478.1 vs. TAIR (Arabidopsis)
Match: AT5G40190.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 282.3 bits (721), Expect = 2.100e-76
Identity = 132/182 (72.53%), Postives = 161/182 (88.46%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MS+GY+IELYFDPALENQ+LKAWNV ARRQIST+LI  ESRPHITLFS+ F + +++E +
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IK+F +KQEP+ ++FS+IGS  ++ N+LFLSPTP+LSLLQ  +QLCD+LKKE V+IGE+Y
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           RVDSWVP CPVA +VPK+RMAEAFSVLRDLKLP+ GY M+IGLVEFSPVRE FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182
[Close]
BLAST of Spo08478.1 vs. TAIR (Arabidopsis)
Match: AT3G28140.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 265.0 bits (676), Expect = 3.400e-71
Identity = 130/183 (71.04%), Postives = 156/183 (85.25%), Query Frame = 1 

		  

Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPF-LEPSKVEP 60
           MSQGY+IELYFDPALENQ+LKAWNV ARRQIST LI  ESRPHITLFS+   ++ +K+EP
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  LIKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGED 120
           +IKSF++KQEP+ L+FSSIGS  ++ N LFLSPTP+LSL+Q   QLC+++KKEG EIGE+
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGN 180
           YRVDSWVP C VA +VPK+R++E F VLRDLKL + GYAMDIGLVEFSPVRE FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TLD 183
            L+
Sbjct: 181 NLE 183
The following BLAST results are available for this feature:
BLAST of Spo08478.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902240014|gb|KNA25837.1|6.2e-99100.hypothetical protein SOVF_0029... [more]
gi|731376311|ref|XP_010667527.1|1.4e-9089.6PREDICTED: uncharacterized pro... [more]
gi|147844702|emb|CAN82133.1|1.6e-8383.5hypothetical protein VITISV_00... [more]
gi|225452536|ref|XP_002279925.1|2.8e-8383.5PREDICTED: uncharacterized pro... [more]
gi|296087705|emb|CBI34961.3|2.8e-8383.5unnamed protein product [Vitis... [more]
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BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S3Y8_SPIOL4.3e-99100.Uncharacterized protein OS=Spi... [more]
A0A0J8B616_BETVU9.7e-9189.6Uncharacterized protein OS=Bet... [more]
A5AGR0_VITVI1.1e-8383.5Putative uncharacterized prote... [more]
D7TWT6_VITVI2.0e-8383.5Putative uncharacterized prote... [more]
M5X3Z2_PRUPE4.8e-8281.3Uncharacterized protein OS=Pru... [more]
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BLAST of Spo08478.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08478.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G40190.12.1e-7672.5RNA ligase/cyclic nucleotide p... [more]
AT3G28140.13.4e-7171.0RNA ligase/cyclic nucleotide p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009097RNA ligase/cyclic nucleotide phosphodiesteraseGENE3D3.90.1140.10coord: 2..111
score: 4.
IPR009097RNA ligase/cyclic nucleotide phosphodiesteraseunknownSSF55144LigT-likecoord: 4..133
score: 1.88
NoneNo IPR availablePANTHERPTHR36039FAMILY NOT NAMEDcoord: 1..182
score: 2.7E
NoneNo IPR availablePANTHERPTHR36039:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15coord: 1..182
score: 2.7E
NoneNo IPR availablePFAMPF135632_5_RNA_ligase2coord: 41..154
score: 3.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0042398 cellular modified amino acid biosynthetic process
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0006598 polyamine catabolic process
biological_process GO:0048767 root hair elongation
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0009658 chloroplast organization
biological_process GO:0006457 protein folding
biological_process GO:0009414 response to water deprivation
biological_process GO:0006979 response to oxidative stress
biological_process GO:0043090 amino acid import
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0009651 response to salt stress
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006364 rRNA processing
biological_process GO:0051604 protein maturation
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0032259 methylation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006886 intracellular protein transport
biological_process GO:0007165 signal transduction
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0032984 protein-containing complex disassembly
biological_process GO:0035265 organ growth
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0007267 cell-cell signaling
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0016556 mRNA modification
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0042908 xenobiotic transport
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009963 positive regulation of flavonoid biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006810 transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0009987 cellular process
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016471 vacuolar proton-transporting V-type ATPase complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0005622 intracellular
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0048046 apoplast
cellular_component GO:0016020 membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005730 nucleolus
molecular_function GO:0046872 metal ion binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0004746 riboflavin synthase activity
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0004602 glutathione peroxidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0043621 protein self-association
molecular_function GO:0003756 protein disulfide isomerase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005179 hormone activity
molecular_function GO:0042393 histone binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo108980.82Barchart | Table
Spo029180.82Barchart | Table
Spo089350.81Barchart | Table
Spo250080.81Barchart | Table
Spo181040.80Barchart | Table
Spo273640.79Barchart | Table
Spo259850.79Barchart | Table
Spo053070.79Barchart | Table
Spo211440.78Barchart | Table
Spo002140.78Barchart | Table
Spo093870.78Barchart | Table
Spo075480.78Barchart | Table
Spo233320.78Barchart | Table
Spo266970.78Barchart | Table
Spo116880.78Barchart | Table
Spo069530.77Barchart | Table
Spo244250.77Barchart | Table
Spo066370.77Barchart | Table
Spo249130.77Barchart | Table
Spo190180.76Barchart | Table
Spo254050.75Barchart | Table
Spo154610.75Barchart | Table
Spo137830.75Barchart | Table
Spo012520.75Barchart | Table
Spo095540.75Barchart | Table
Spo009430.75Barchart | Table
Spo251960.75Barchart | Table
Spo026960.75Barchart | Table
Spo137880.74Barchart | Table
Spo149140.74Barchart | Table
Spo139630.74Barchart | Table
Spo246750.74Barchart | Table
Spo044250.74Barchart | Table
Spo050320.74Barchart | Table
Spo061700.74Barchart | Table
Spo064530.74Barchart | Table
Spo084070.74Barchart | Table
Spo097690.74Barchart | Table
Spo108350.74Barchart | Table
Spo170380.74Barchart | Table
Spo175770.73Barchart | Table
Spo115240.73Barchart | Table
Spo041230.73Barchart | Table
Spo201060.73Barchart | Table
Spo139810.73Barchart | Table
Spo224510.72Barchart | Table
Spo012170.72Barchart | Table
Spo146300.72Barchart | Table
Spo102840.72Barchart | Table
Spo256330.72Barchart | Table
Spo033620.72Barchart | Table
Spo019830.72Barchart | Table
Spo182850.72Barchart | Table
Spo133930.72Barchart | Table
Spo243240.71Barchart | Table
Spo269750.71Barchart | Table
Spo122280.71Barchart | Table
Spo244300.71Barchart | Table
Spo257170.71Barchart | Table
Spo189430.71Barchart | Table
Spo096590.71Barchart | Table
Spo097980.71Barchart | Table
Spo104910.71Barchart | Table
Spo161880.71Barchart | Table
Spo186050.71Barchart | Table
Spo216600.71Barchart | Table
Spo240160.71Barchart | Table
Spo142320.70Barchart | Table
Spo007430.70Barchart | Table
Spo011040.70Barchart | Table
Spo033100.70Barchart | Table
Spo042000.70Barchart | Table
Spo050120.70Barchart | Table
Spo077330.70Barchart | Table
Spo097770.70Barchart | Table
Spo126820.70Barchart | Table
Spo180800.70Barchart | Table
Spo194570.70Barchart | Table
Spo220040.70Barchart | Table
Spo243250.70Barchart | Table
Spo266100.70Barchart | Table
Spo166430.69Barchart | Table
Spo051250.69Barchart | Table
Spo169300.69Barchart | Table
Spo064030.69Barchart | Table
Spo259870.69Barchart | Table
Spo255730.69Barchart | Table
Spo237120.69Barchart | Table
Spo221670.69Barchart | Table
Spo263550.69Barchart | Table
Spo021060.68Barchart | Table
Spo153170.68Barchart | Table
Spo181840.68Barchart | Table
Spo131610.68Barchart | Table
Spo129760.68Barchart | Table
Spo152080.68Barchart | Table
Spo236260.68Barchart | Table
Spo235580.68Barchart | Table
Spo096250.68Barchart | Table
Spo233820.68Barchart | Table
Spo158430.68Barchart | Table
Spo233480.68Barchart | Table
Spo158760.68Barchart | Table
Spo231540.68Barchart | Table
Spo229690.68Barchart | Table
Spo123700.68Barchart | Table
Spo177400.68Barchart | Table
Spo131710.67Barchart | Table
Spo153900.67Barchart | Table
Spo154990.67Barchart | Table
Spo010540.67Barchart | Table
Spo182230.67Barchart | Table
Spo108710.67Barchart | Table
Spo185780.67Barchart | Table
Spo193410.67Barchart | Table
Spo199380.67Barchart | Table
Spo216740.67Barchart | Table
Spo218330.67Barchart | Table
Spo007610.67Barchart | Table
Spo242140.67Barchart | Table
Spo243310.67Barchart | Table
Spo028900.67Barchart | Table
Spo019250.67Barchart | Table
Spo013420.67Barchart | Table
Spo136910.67Barchart | Table
Spo142560.67Barchart | Table
Spo191100.66Barchart | Table
Spo002560.66Barchart | Table
Spo047190.66Barchart | Table
Spo033020.66Barchart | Table
Spo151300.66Barchart | Table
Spo023960.66Barchart | Table
Spo063350.66Barchart | Table
Spo002050.66Barchart | Table
Spo062780.66Barchart | Table
Spo211550.66Barchart | Table
Spo069450.66Barchart | Table
Spo057790.66Barchart | Table
Spo268580.66Barchart | Table
Spo187780.66Barchart | Table
Spo108640.66Barchart | Table
Spo052350.66Barchart | Table
Spo240460.66Barchart | Table
Spo271360.66Barchart | Table
Spo094340.65Barchart | Table
Spo029790.65Barchart | Table
Spo212150.65Barchart | Table
Spo026650.65Barchart | Table
Spo012810.65Barchart | Table
Spo240650.65Barchart | Table
Spo126090.65Barchart | Table
Spo119290.65Barchart | Table
Spo178600.65Barchart | Table
Spo177290.65Barchart | Table
Spo135070.65Barchart | Table
Spo123540.65Barchart | Table