Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGGACCTCATTTCATTTCCATTTTCCCAACCCTGTATAGGGACCTAACCCTAGTTGGATTCTAACCATTCTCCTTAACCCCAGTTTGTTTATTTAAGGACACTGAAATTTGGGAGCCTTCTGGCTCTGGATTGTGATCTTGGTTTTCTTTCTTTTTCCAGCACAACTCCTCTTTCCTTCTCTCTTCTTTCTGGTTTGGGATTGGGTAAAAATTCTTGTGCTTTTTCTTCTTTTTTTACTGGTGCAAGAGAGGTAAAAAAAAAAACAGACTGATGATGATGATGATAGGAGGTTAAAAAAACCTGCTTCAAATTCTTCCTTTCATGGAAACTAAACAAAACATTTGAGAAAAAAAGACTTAAAAAAGATACAAAACCCTCCACATTAAACCCAAGTTTAAAAAAAAACAAAAAAGGGAAATTTTTTAGTAAATTCTGCTGAATTATGAAGAGAACTAGAAGTTCAGATTCACTGGGTGCTCTCATTTCCATACAAGGTTTTACTTACTTACTTTCATATAATTCTCTTGTTTTTTTTTATAATGGAAATTTTCTTTTCTTGTTTGATTGTTCATGTTTATATTCTCCTATGTCGATTCATATTAGCCGACCTCAAATTATTTTATTTATATTTATATTTATATTTGTGTTAGTGCTGAATTGTGGTGTTTTTTTAATGGTTGATGCAGAGGAACACAGTCCAAGAAACAACAACAACATATACAGCAACAGAGATTACCAATCTATGATGTTAGAGAGTCTTGTTGATGAAGAAGGTTGCATAGAAGAAATCGGGCACATACCGGAAAAGAAACGGAGGTTAAGTGTGGATCAAGTCAAGGCTTTAGAGAGGAACTTTGAGGTTGAGAACAAGCTTGAACCAGAGAGAAAAGTGCAGCTTGCTCAAGAACTTGGTCTGAAACCTAGACAGGTTGCTGTTTGGTTTCAGAATCGTAGAGCTAGGTGGAAGACTAAGCAATTGGAGAGAGATTATGGTGTTCTTAAATCTAGTTTTGATAATCTGAAACAGAATTTTGAGTCACTTCAACATGACAAGGATGCACTCCTCAAAGAGGTAAACTTTTACCATGTTAATTTTATGTCATATTTGATAAGATTTTTGTTATGTTATGTTATGTTACTCGGACTTTTCATTTTAAGTTCAATATCTGTAAACGGTGTTGGATAGTATGGTCGTATGGGGGTAACGGAGTGTCTTGGGCAAGGATCCGTTTTAGACACTCCTACTCAAATCTGAATAACATTAGTGCTATGAGCAGATATCAGTCAGACCGTGTATTAGATAGTATGGTCATATGGGATTGTCTTGAGCAAGGACCCATTTTAGACAATCTTACTCGAGTTTGAGTAACATTAGTGCTACGAGCAGATACCAGTCGGACTTCATGTTGGATAGTATGGTCATATGTGGTGTCTTGAGCAAGGACCCATTTTAGACATTCTTGCTTGAGTCTGAGTACCATTAGTGCTACGAGCAGATACCTATCAGACTCTCGTGGTTGATAGTATATATGGTTACATGGGTGTCTTGAACAAGGACCCTTACACTCCTACTCGAGTCTGAATAGCCTTAGTGCTACGAGCGGATACCAGCCAGATCCTAAAGAGACACATTGGATTACTGTCAACGATATCCTTTAAGTATCTGAAAAGGCATAAGGATCGTTTTCCAGTCTATGTTGTATGTGATGAATTGATTGTAAAAAGCTATATAGACGCAGTTTATTTGGAATGTGTGACTTACAAAAATATTTTTATGACAGATCAAAGAGCTGAAATCAAAGCTAGGCGAAGATAGAGTCTCAAAAGAAGAAGAAGCTTTGCTGTTTGAATCTGAGAACATCAACATGAACGACGACGACGAAGACGACATTGAACCGATCACCCCACCTGCAGAATCACTGAGTGGCGGCGGCGGTGGTGGTGGTGACGGCGGTGGTGGATCGGAAAATGCAAAGTTGTTGAAAGTCCAAAACATGTTTGCCAAATTCAAAGACGGTGGCCCTTCTGATAGCGACTCTAGCGCAATTTTGAACGATGACAATAATAATAGCAACAGTCCAAATGCTTCAAACTCTTCTAGTGAACCCATTTTCCAGAATCATCAACAACAACAGCAACAACAACAACAACAACATCATCAACAACAACAACAGCTATTGATGTCGCCTTCTTCATCCTCCTTCAGATTCAACAGTTCTTCACCATCTCCACCATCAATCAACTGTTTCGATTTCTCGAGATTAGACGAAATGCGGACAACCCAGAATCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACAGTAATAATGTGTATCACCCGCAGTTTGTGAAGATTGAAGAACACAATTTCTTCAGTGGAGAAGAAGCATGTAATTTCTTCTCAGAAGAACAAGCTCCATCACTTCACTGGTACTGCCCAGATCAGTGGACTTAATCAATTTCCCAAAACACCCCTGAAAGTGAGATGATAAGATGAAGATGATGATTAAAAAAAATTGATGAAATTCATGGCTTTGGGAAGATAAAATGAGAAGGGGATCGAGTTGATTTGTCTGTCACTGAACTCAATAAAAAAAAACATCCTGCAATTAATTGTACAGAGTTTAAGTTCCCAATACACTGAATGATTTCTGGTGTTTGGAAGCAAGAAAAATGGAGGGGACGAGACCCTGTGGGGAGGTTATGGGAGGAGAGAGAAAGATGACGTCAGTTGAGATGACATGGCAAATTAATGAATGGAATTATTAGGCAGTAATTGGGGGAGAGTAGTTTCTTTCTCTCTCTACTGTAAAAACATGAAATTAAATAATAATATTATTATTACCAATTTGCATGAACAGGATAAATAAATCCTGTTTTATGCAGATAATAATGATAGGTTTTTGTTGATCCAATCAACCTTGTCATAACAATGATTTTTTTGCTTTCTATATGAGACCAAGAATTTTAGCACTATAAAATGATGATGTGCAACCTTTCAAAAAAAAAAATGATGATGTGCA ATTTGGACCTCATTTCATTTCCATTTTCCCAACCCTGTATAGGGACCTAACCCTAGTTGGATTCTAACCATTCTCCTTAACCCCAGTTTGTTTATTTAAGGACACTGAAATTTGGGAGCCTTCTGGCTCTGGATTGTGATCTTGGTTTTCTTTCTTTTTCCAGCACAACTCCTCTTTCCTTCTCTCTTCTTTCTGGTTTGGGATTGGGTAAAAATTCTTGTGCTTTTTCTTCTTTTTTTACTGGTGCAAGAGAGGTAAAAAAAAAAACAGACTGATGATGATGATGATAGGAGGTTAAAAAAACCTGCTTCAAATTCTTCCTTTCATGGAAACTAAACAAAACATTTGAGAAAAAAAGACTTAAAAAAGATACAAAACCCTCCACATTAAACCCAAGTTTAAAAAAAAACAAAAAAGGGAAATTTTTTAGTAAATTCTGCTGAATTATGAAGAGAACTAGAAGTTCAGATTCACTGGGTGCTCTCATTTCCATACAAGAGGAACACAGTCCAAGAAACAACAACAACATATACAGCAACAGAGATTACCAATCTATGATGTTAGAGAGTCTTGTTGATGAAGAAGGTTGCATAGAAGAAATCGGGCACATACCGGAAAAGAAACGGAGGTTAAGTGTGGATCAAGTCAAGGCTTTAGAGAGGAACTTTGAGGTTGAGAACAAGCTTGAACCAGAGAGAAAAGTGCAGCTTGCTCAAGAACTTGGTCTGAAACCTAGACAGGTTGCTGTTTGGTTTCAGAATCGTAGAGCTAGGTGGAAGACTAAGCAATTGGAGAGAGATTATGGTGTTCTTAAATCTAGTTTTGATAATCTGAAACAGAATTTTGAGTCACTTCAACATGACAAGGATGCACTCCTCAAAGAGATCAAAGAGCTGAAATCAAAGCTAGGCGAAGATAGAGTCTCAAAAGAAGAAGAAGCTTTGCTGTTTGAATCTGAGAACATCAACATGAACGACGACGACGAAGACGACATTGAACCGATCACCCCACCTGCAGAATCACTGAGTGGCGGCGGCGGTGGTGGTGGTGACGGCGGTGGTGGATCGGAAAATGCAAAGTTGTTGAAAGTCCAAAACATGTTTGCCAAATTCAAAGACGGTGGCCCTTCTGATAGCGACTCTAGCGCAATTTTGAACGATGACAATAATAATAGCAACAGTCCAAATGCTTCAAACTCTTCTAGTGAACCCATTTTCCAGAATCATCAACAACAACAGCAACAACAACAACAACAACATCATCAACAACAACAACAGCTATTGATGTCGCCTTCTTCATCCTCCTTCAGATTCAACAGTTCTTCACCATCTCCACCATCAATCAACTGTTTCGATTTCTCGAGATTAGACGAAATGCGGACAACCCAGAATCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACAGTAATAATGTGTATCACCCGCAGTTTGTGAAGATTGAAGAACACAATTTCTTCAGTGGAGAAGAAGCATGTAATTTCTTCTCAGAAGAACAAGCTCCATCACTTCACTGGTACTGCCCAGATCAGTGGACTTAATCAATTTCCCAAAACACCCCTGAAAGTGAGATGATAAGATGAAGATGATGATTAAAAAAAATTGATGAAATTCATGGCTTTGGGAAGATAAAATGAGAAGGGGATCGAGTTGATTTGTCTGTCACTGAACTCAATAAAAAAAAACATCCTGCAATTAATTGTACAGAGTTTAAGTTCCCAATACACTGAATGATTTCTGGTGTTTGGAAGCAAGAAAAATGGAGGGGACGAGACCCTGTGGGGAGGTTATGGGAGGAGAGAGAAAGATGACGTCAGTTGAGATGACATGGCAAATTAATGAATGGAATTATTAGGCAGTAATTGGGGGAGAGTAGTTTCTTTCTCTCTCTACTGTAAAAACATGAAATTAAATAATAATATTATTATTACCAATTTGCATGAACAGGATAAATAAATCCTGTTTTATGCAGATAATAATGATAGGTTTTTGTTGATCCAATCAACCTTGTCATAACAATGATTTTTTTGCTTTCTATATGAGACCAAGAATTTTAGCACTATAAAATGATGATGTGCAACCTTTCAAAAAAAAAAATGATGATGTGCA ATGAAGAGAACTAGAAGTTCAGATTCACTGGGTGCTCTCATTTCCATACAAGAGGAACACAGTCCAAGAAACAACAACAACATATACAGCAACAGAGATTACCAATCTATGATGTTAGAGAGTCTTGTTGATGAAGAAGGTTGCATAGAAGAAATCGGGCACATACCGGAAAAGAAACGGAGGTTAAGTGTGGATCAAGTCAAGGCTTTAGAGAGGAACTTTGAGGTTGAGAACAAGCTTGAACCAGAGAGAAAAGTGCAGCTTGCTCAAGAACTTGGTCTGAAACCTAGACAGGTTGCTGTTTGGTTTCAGAATCGTAGAGCTAGGTGGAAGACTAAGCAATTGGAGAGAGATTATGGTGTTCTTAAATCTAGTTTTGATAATCTGAAACAGAATTTTGAGTCACTTCAACATGACAAGGATGCACTCCTCAAAGAGATCAAAGAGCTGAAATCAAAGCTAGGCGAAGATAGAGTCTCAAAAGAAGAAGAAGCTTTGCTGTTTGAATCTGAGAACATCAACATGAACGACGACGACGAAGACGACATTGAACCGATCACCCCACCTGCAGAATCACTGAGTGGCGGCGGCGGTGGTGGTGGTGACGGCGGTGGTGGATCGGAAAATGCAAAGTTGTTGAAAGTCCAAAACATGTTTGCCAAATTCAAAGACGGTGGCCCTTCTGATAGCGACTCTAGCGCAATTTTGAACGATGACAATAATAATAGCAACAGTCCAAATGCTTCAAACTCTTCTAGTGAACCCATTTTCCAGAATCATCAACAACAACAGCAACAACAACAACAACAACATCATCAACAACAACAACAGCTATTGATGTCGCCTTCTTCATCCTCCTTCAGATTCAACAGTTCTTCACCATCTCCACCATCAATCAACTGTTTCGATTTCTCGAGATTAGACGAAATGCGGACAACCCAGAATCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACAGTAATAATGTGTATCACCCGCAGTTTGTGAAGATTGAAGAACACAATTTCTTCAGTGGAGAAGAAGCATGTAATTTCTTCTCAGAAGAACAAGCTCCATCACTTCACTGGTACTGCCCAGATCAGTGGACTTAA MKRTRSSDSLGALISIQEEHSPRNNNNIYSNRDYQSMMLESLVDEEGCIEEIGHIPEKKRRLSVDQVKALERNFEVENKLEPERKVQLAQELGLKPRQVAVWFQNRRARWKTKQLERDYGVLKSSFDNLKQNFESLQHDKDALLKEIKELKSKLGEDRVSKEEEALLFESENINMNDDDEDDIEPITPPAESLSGGGGGGGDGGGGSENAKLLKVQNMFAKFKDGGPSDSDSSAILNDDNNNSNSPNASNSSSEPIFQNHQQQQQQQQQQHHQQQQQLLMSPSSSSFRFNSSSPSPPSINCFDFSRLDEMRTTQNHNNNNNNNNNNNNNNSNNNSNNSNNVYHPQFVKIEEHNFFSGEEACNFFSEEQAPSLHWYCPDQWT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo08282.1 vs. NCBI nr
Match: gi|902239679|gb|KNA25673.1| (hypothetical protein SOVF_004370 [Spinacia oleracea]) HSP 1 Score: 703.7 bits (1815), Expect = 1.700e-199 Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1
BLAST of Spo08282.1 vs. NCBI nr
Match: gi|731339731|ref|XP_010681015.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 411.8 bits (1057), Expect = 1.300e-111 Identity = 260/389 (66.84%), Postives = 294/389 (75.58%), Query Frame = 1
BLAST of Spo08282.1 vs. NCBI nr
Match: gi|590706919|ref|XP_007047858.1| (Alanine--glyoxylate aminotransferase 2 isoform 1 [Theobroma cacao]) HSP 1 Score: 308.5 bits (789), Expect = 1.600e-80 Identity = 204/390 (52.31%), Postives = 253/390 (64.87%), Query Frame = 1
BLAST of Spo08282.1 vs. NCBI nr
Match: gi|359480491|ref|XP_003632476.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6 [Vitis vinifera]) HSP 1 Score: 306.2 bits (783), Expect = 7.900e-80 Identity = 208/396 (52.53%), Postives = 257/396 (64.90%), Query Frame = 1
BLAST of Spo08282.1 vs. NCBI nr
Match: gi|645219318|ref|XP_008235150.1| (PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Prunus mume]) HSP 1 Score: 298.9 bits (764), Expect = 1.300e-77 Identity = 202/393 (51.40%), Postives = 251/393 (63.87%), Query Frame = 1
BLAST of Spo08282.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1U2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004370 PE=4 SV=1) HSP 1 Score: 703.7 bits (1815), Expect = 1.200e-199 Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1
BLAST of Spo08282.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9D1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138670 PE=4 SV=1) HSP 1 Score: 411.8 bits (1057), Expect = 9.300e-112 Identity = 260/389 (66.84%), Postives = 294/389 (75.58%), Query Frame = 1
BLAST of Spo08282.1 vs. UniProtKB/TrEMBL
Match: A0A061DJ94_THECC (Alanine--glyoxylate aminotransferase 2 isoform 1 OS=Theobroma cacao GN=TCM_001039 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 1.100e-80 Identity = 204/390 (52.31%), Postives = 253/390 (64.87%), Query Frame = 1
BLAST of Spo08282.1 vs. UniProtKB/TrEMBL
Match: F6HRP5_VITVI (Homodomain-leucine zipper protein ATHB-6-like protein OS=Vitis vinifera GN=VIT_07s0191g00180 PE=2 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 5.500e-80 Identity = 208/396 (52.53%), Postives = 257/396 (64.90%), Query Frame = 1
BLAST of Spo08282.1 vs. UniProtKB/TrEMBL
Match: A5C9F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008512 PE=4 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 7.400e-77 Identity = 207/406 (50.99%), Postives = 256/406 (63.05%), Query Frame = 1
BLAST of Spo08282.1 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.200e-45 Identity = 121/257 (47.08%), Postives = 166/257 (64.59%), Query Frame = 1
BLAST of Spo08282.1 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 6.500e-42 Identity = 118/260 (45.38%), Postives = 158/260 (60.77%), Query Frame = 1
BLAST of Spo08282.1 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2) HSP 1 Score: 148.7 bits (374), Expect = 1.300e-34 Identity = 125/315 (39.68%), Postives = 179/315 (56.83%), Query Frame = 1
BLAST of Spo08282.1 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.800e-34 Identity = 91/182 (50.00%), Postives = 114/182 (62.64%), Query Frame = 1
BLAST of Spo08282.1 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.800e-34 Identity = 91/182 (50.00%), Postives = 114/182 (62.64%), Query Frame = 1
BLAST of Spo08282.1 vs. TAIR (Arabidopsis)
Match: AT2G22430.1 (homeobox protein 6) HSP 1 Score: 184.5 bits (467), Expect = 1.200e-46 Identity = 121/257 (47.08%), Postives = 166/257 (64.59%), Query Frame = 1
BLAST of Spo08282.1 vs. TAIR (Arabidopsis)
Match: AT5G65310.1 (homeobox protein 5) HSP 1 Score: 172.9 bits (437), Expect = 3.700e-43 Identity = 118/260 (45.38%), Postives = 158/260 (60.77%), Query Frame = 1
BLAST of Spo08282.1 vs. TAIR (Arabidopsis)
Match: AT4G40060.1 (homeobox protein 16) HSP 1 Score: 148.7 bits (374), Expect = 7.400e-36 Identity = 125/315 (39.68%), Postives = 179/315 (56.83%), Query Frame = 1
BLAST of Spo08282.1 vs. TAIR (Arabidopsis)
Match: AT3G01470.1 (homeobox 1) HSP 1 Score: 133.7 bits (335), Expect = 2.500e-31 Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 1
BLAST of Spo08282.1 vs. TAIR (Arabidopsis)
Match: AT1G69780.1 (Homeobox-leucine zipper protein family) HSP 1 Score: 124.0 bits (310), Expect = 2.000e-28 Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo08282.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo08282.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo08282.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo08282.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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