Spo08271 (gene)

Overview
NameSpo08271
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01367 : 96126 .. 96434 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCATGGTCAAAGGCCAAAGCCTATGGAAGAGCACACACCGCTTTCTTTCGTTTCAGGAAAAAAAATCTGTATTCTTTCGAACCCCCAAAGCTTGCTGTGTCTTGCTGACTTTTCTCTTTCTCTCTCCTCCCCCTCTTCCTCTCTCTTTATCTCTCCTCCAAAGGGTGTTCAATCTTTCCCATGGCGCTTCTCAATCTCACAACCTCCTTTCGATCGCCTCTTTGAAGCACAGGCAAAGGAGGGAGATTTTGTCGCTCCAATTTTCTCGATTTCCCCACTTGAAATAAGCTCAAGCTTCACCTAA

mRNA sequence

ATGACTCATGGTCAAAGGCCAAAGCCTATGGAAGAGCACACACCGCTTTCTTTCGTTTCAGGAAAAAAAATCTGTATTCTTTCGAACCCCCAAAGCTTGCTGTGTCTTGCTGACTTTTCTCTTTCTCTCTCCTCCCCCTCTTCCTCTCTCTTTATCTCTCCTCCAAAGGGTGTTCAATCTTTCCCATGGCGCTTCTCAATCTCACAACCTCCTTTCGATCGCCTCTTTGAAGCACAGGCAAAGGAGGGAGATTTTGTCGCTCCAATTTTCTCGATTTCCCCACTTGAAATAAGCTCAAGCTTCACCTAA

Coding sequence (CDS)

ATGACTCATGGTCAAAGGCCAAAGCCTATGGAAGAGCACACACCGCTTTCTTTCGTTTCAGGAAAAAAAATCTGTATTCTTTCGAACCCCCAAAGCTTGCTGTGTCTTGCTGACTTTTCTCTTTCTCTCTCCTCCCCCTCTTCCTCTCTCTTTATCTCTCCTCCAAAGGGTGTTCAATCTTTCCCATGGCGCTTCTCAATCTCACAACCTCCTTTCGATCGCCTCTTTGAAGCACAGGCAAAGGAGGGAGATTTTGTCGCTCCAATTTTCTCGATTTCCCCACTTGAAATAAGCTCAAGCTTCACCTAA

Protein sequence

MTHGQRPKPMEEHTPLSFVSGKKICILSNPQSLLCLADFSLSLSSPSSSLFISPPKGVQSFPWRFSISQPPFDRLFEAQAKEGDFVAPIFSISPLEISSSFT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08271.1Spo08271.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo08271.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08271.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08271.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08271.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0061025 membrane fusion
biological_process GO:0009729 detection of brassinosteroid stimulus
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0007033 vacuole organization
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
biological_process GO:0048657 anther wall tapetum cell differentiation
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0009742 brassinosteroid mediated signaling pathway
biological_process GO:0009932 cell tip growth
biological_process GO:0071555 cell wall organization
biological_process GO:0042742 defense response to bacterium
biological_process GO:0048366 leaf development
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0060548 negative regulation of cell death
biological_process GO:0010584 pollen exine formation
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0010817 regulation of hormone levels
biological_process GO:1900140 regulation of seedling development
biological_process GO:0002237 response to molecule of bacterial origin
biological_process GO:0010224 response to UV-B
biological_process GO:0048767 root hair elongation
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007030 Golgi organization
biological_process GO:0000902 cell morphogenesis
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0071369 cellular response to ethylene stimulus
biological_process GO:0071281 cellular response to iron ion
biological_process GO:0071732 cellular response to nitric oxide
biological_process GO:0019509 L-methionine salvage from methylthioadenosine
biological_process GO:0016310 phosphorylation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0018108 peptidyl-tyrosine phosphorylation
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
biological_process GO:0006810 transport
biological_process GO:0016049 cell growth
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005622 intracellular
cellular_component GO:0010008 endosome membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005777 peroxisome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0005496 steroid binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0004714 transmembrane receptor protein tyrosine kinase activity
molecular_function GO:0047617 acyl-CoA hydrolase activity
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004715 non-membrane spanning protein tyrosine kinase activity
molecular_function GO:0046522 S-methyl-5-thioribose kinase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity
molecular_function GO:0004620 phospholipase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo051350.76Barchart | Table
Spo254830.74Barchart | Table
Spo212140.73Barchart | Table
Spo056270.72Barchart | Table
Spo092900.71Barchart | Table
Spo069190.71Barchart | Table
Spo088500.71Barchart | Table
Spo143420.71Barchart | Table
Spo049070.70Barchart | Table
Spo130290.70Barchart | Table
Spo050930.70Barchart | Table
Spo270810.70Barchart | Table
Spo188000.69Barchart | Table
Spo119180.69Barchart | Table
Spo113390.69Barchart | Table
Spo018580.69Barchart | Table
Spo246070.69Barchart | Table
Spo264240.69Barchart | Table
Spo280580.68Barchart | Table
Spo176100.68Barchart | Table
Spo024860.68Barchart | Table
Spo003620.68Barchart | Table
Spo220280.68Barchart | Table
Spo225290.68Barchart | Table
Spo139520.68Barchart | Table
Spo084350.68Barchart | Table
Spo135180.68Barchart | Table
Spo117470.68Barchart | Table
Spo103160.68Barchart | Table
Spo036620.68Barchart | Table
Spo020100.67Barchart | Table
Spo021070.67Barchart | Table
Spo029320.67Barchart | Table
Spo065060.67Barchart | Table
Spo085210.67Barchart | Table
Spo085720.67Barchart | Table
Spo094990.67Barchart | Table
Spo119230.67Barchart | Table
Spo142250.67Barchart | Table
Spo148810.67Barchart | Table
Spo156390.67Barchart | Table
Spo158730.67Barchart | Table
Spo166520.67Barchart | Table
Spo169110.67Barchart | Table
Spo189970.67Barchart | Table
Spo245490.67Barchart | Table
Spo250430.67Barchart | Table
Spo057280.66Barchart | Table
Spo011840.66Barchart | Table
Spo039370.66Barchart | Table
Spo001140.66Barchart | Table
Spo018400.66Barchart | Table
Spo237510.66Barchart | Table
Spo004860.66Barchart | Table
Spo116230.66Barchart | Table
Spo104440.66Barchart | Table
Spo099400.66Barchart | Table
Spo133930.66Barchart | Table
Spo096050.66Barchart | Table
Spo250780.66Barchart | Table
Spo011040.66Barchart | Table
Spo177880.66Barchart | Table
Spo048630.66Barchart | Table
Spo192450.66Barchart | Table
Spo195990.66Barchart | Table
Spo206390.66Barchart | Table
Spo211300.66Barchart | Table
Spo258760.65Barchart | Table
Spo012610.65Barchart | Table
Spo268580.65Barchart | Table
Spo052270.65Barchart | Table
Spo071840.65Barchart | Table
Spo135030.65Barchart | Table
Spo270040.65Barchart | Table
Spo236580.65Barchart | Table
Spo236640.65Barchart | Table
Spo247520.65Barchart | Table
Spo003690.65Barchart | Table