Spo08157 (gene)

Overview
NameSpo08157
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L2, chloroplastic
Locationchr5 : 10439159 .. 10439734 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCTTCCGAGCACGCACCACCCTCCTGACCACCCTACGCCGCACCTTCTCCTCCTCCTCCTCCACACCAGTCACCGAAGCCAAACCCCCCAAAATGTCAGACTATCTCCTAACAAACGACCTAGCATCCCAAATCGGTACCTCAATGCCAATCTCCATGATGCGAATCGGAACCCTAATCCACAACATCGAGCTCCGCCCCAGTGAAGGCGGAAAACTCGTCCGTTCTGCCGGCACCGTTGCCAAAATCCTCAAAGAACCCTCCGCCACGCGCCGCGTTCTCGTCCGTCTCCCTTCTGGCGTCAGCAAGATGATCGATACTCGCTGCCGGGCTACAATTGGCTCCGTCTCCAACCCTTCTCATGGCGCCAAGAAGCTGAAGAAAGCTGGTAATAGTCGGTGGCTTGGCCGAAGACCGGTGGTTCGTGGTGTTGCTATGAACCCTATTGATCATCCTCATGGTGGTGGTGAGGGTAAAAGTAAAGGGCATTTGTCTGTTTCTCCTTGGGGTAAGCCTACTAAAGGTGGGTATAAAACTGCTTGTCCTAAGAAGAAGAATCGCGTCATTTAG

mRNA sequence

ATGGCGTTCTTCCGAGCACGCACCACCCTCCTGACCACCCTACGCCGCACCTTCTCCTCCTCCTCCTCCACACCAGTCACCGAAGCCAAACCCCCCAAAATGTCAGACTATCTCCTAACAAACGACCTAGCATCCCAAATCGGTACCTCAATGCCAATCTCCATGATGCGAATCGGAACCCTAATCCACAACATCGAGCTCCGCCCCAGTGAAGGCGGAAAACTCGTCCGTTCTGCCGGCACCGTTGCCAAAATCCTCAAAGAACCCTCCGCCACGCGCCGCGTTCTCGTCCGTCTCCCTTCTGGCGTCAGCAAGATGATCGATACTCGCTGCCGGGCTACAATTGGCTCCGTCTCCAACCCTTCTCATGGCGCCAAGAAGCTGAAGAAAGCTGGTAATAGTCGGTGGCTTGGCCGAAGACCGGTGGTTCGTGGTGTTGCTATGAACCCTATTGATCATCCTCATGGTGGTGGTGAGGGTAAAAGTAAAGGGCATTTGTCTGTTTCTCCTTGGGGTAAGCCTACTAAAGGTGGGTATAAAACTGCTTGTCCTAAGAAGAAGAATCGCGTCATTTAG

Coding sequence (CDS)

ATGGCGTTCTTCCGAGCACGCACCACCCTCCTGACCACCCTACGCCGCACCTTCTCCTCCTCCTCCTCCACACCAGTCACCGAAGCCAAACCCCCCAAAATGTCAGACTATCTCCTAACAAACGACCTAGCATCCCAAATCGGTACCTCAATGCCAATCTCCATGATGCGAATCGGAACCCTAATCCACAACATCGAGCTCCGCCCCAGTGAAGGCGGAAAACTCGTCCGTTCTGCCGGCACCGTTGCCAAAATCCTCAAAGAACCCTCCGCCACGCGCCGCGTTCTCGTCCGTCTCCCTTCTGGCGTCAGCAAGATGATCGATACTCGCTGCCGGGCTACAATTGGCTCCGTCTCCAACCCTTCTCATGGCGCCAAGAAGCTGAAGAAAGCTGGTAATAGTCGGTGGCTTGGCCGAAGACCGGTGGTTCGTGGTGTTGCTATGAACCCTATTGATCATCCTCATGGTGGTGGTGAGGGTAAAAGTAAAGGGCATTTGTCTGTTTCTCCTTGGGGTAAGCCTACTAAAGGTGGGTATAAAACTGCTTGTCCTAAGAAGAAGAATCGCGTCATTTAG

Protein sequence

MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYKTACPKKKNRVI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08157.1Spo08157.1mRNA


Homology
[Close]
BLAST of Spo08157.1 vs. NCBI nr
Match: gi|902203658|gb|KNA14638.1| (hypothetical protein SOVF_105680 [Spinacia oleracea])

HSP 1 Score: 374.8 bits (961), Expect = 9.100e-101
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 

		  

Query: 1   MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT 60
           MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT
Sbjct: 1   MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT 60

Query: 61  LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN 120
           LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN
Sbjct: 61  LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN 120

Query: 121 PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK 180
           PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK
Sbjct: 121 PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK 180

Query: 181 TACPKKKNRVI 192
           TACPKKKNRVI
Sbjct: 181 TACPKKKNRVI 191
[Close]
BLAST of Spo08157.1 vs. NCBI nr
Match: gi|731367640|ref|XP_010695718.1| (PREDICTED: 60S ribosomal protein L2, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 342.4 bits (877), Expect = 5.000e-91
Identity = 175/191 (91.62%), Postives = 181/191 (94.76%), Query Frame = 1 

		  

Query: 1   MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT 60
           MAF RAR TLLTTLRRTFS+SS TP+ E KPPKMSDYLLTNDLASQIGTSMPISMMRIGT
Sbjct: 1   MAFLRARATLLTTLRRTFSTSS-TPLHETKPPKMSDYLLTNDLASQIGTSMPISMMRIGT 60

Query: 61  LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN 120
           LIHNIELRP EGGKLVRSAGT AKILKEPS++RRVLVRLPSGV K+IDTRCRATIGSVSN
Sbjct: 61  LIHNIELRPKEGGKLVRSAGTSAKILKEPSSSRRVLVRLPSGVDKLIDTRCRATIGSVSN 120

Query: 121 PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK 180
           PSH AKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGH SVSPWGKPTKGGYK
Sbjct: 121 PSHRAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHQSVSPWGKPTKGGYK 180

Query: 181 TACPKKKNRVI 192
           TACPKKKNR+I
Sbjct: 181 TACPKKKNRLI 190
[Close]
BLAST of Spo08157.1 vs. NCBI nr
Match: gi|870844531|gb|KMS97477.1| (hypothetical protein BVRB_5g126760 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 301.6 bits (771), Expect = 9.800e-79
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 1 

		  

Query: 34  MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATR 93
           MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRP EGGKLVRSAGT AKILKEPS++R
Sbjct: 1   MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPKEGGKLVRSAGTSAKILKEPSSSR 60

Query: 94  RVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDH 153
           RVLVRLPSGV K+IDTRCRATIGSVSNPSH AKKLKKAGNSRWLGRRPVVRGVAMNPIDH
Sbjct: 61  RVLVRLPSGVDKLIDTRCRATIGSVSNPSHRAKKLKKAGNSRWLGRRPVVRGVAMNPIDH 120

Query: 154 PHGGGEGKSKGHLSVSPWGKPTKGGYKTACPKKKNRVI 192
           PHGGGEGKSKGH SVSPWGKPTKGGYKTACPKKKNR+I
Sbjct: 121 PHGGGEGKSKGHQSVSPWGKPTKGGYKTACPKKKNRLI 158
[Close]
BLAST of Spo08157.1 vs. NCBI nr
Match: gi|604344160|gb|EYU42959.1| (hypothetical protein MIMGU_mgv1a013825mg [Erythranthe guttata])

HSP 1 Score: 229.9 bits (585), Expect = 3.600e-57
Identity = 128/206 (62.14%), Postives = 150/206 (72.82%), Query Frame = 1 

		  

Query: 1   MAFFRARTTLLTTLR-------RTFSSSSSTPVTEAK------PPKMSDYLLTNDLASQI 60
           MA  RAR    T LR       R+ SS +  PV E+K         M +++ T D++SQI
Sbjct: 1   MALLRARFPSSTLLRSLLSAPSRSLSSGAIEPVVESKGGVQSWKTTMMNHMATQDISSQI 60

Query: 61  GTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVL-VRLPSGVSKM 120
           G+ MP+S+MRIGT+IHNIE+RP +GGKLVR+AGT AKIL EP    R   + LPSG  KM
Sbjct: 61  GSCMPLSLMRIGTMIHNIEIRPGQGGKLVRAAGTEAKILTEPHRVARYCEILLPSGEKKM 120

Query: 121 IDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSK--- 180
           ID RCRATIG+VSNP HGAKKL+KAG+SRWLGRRPVVRGVAMNPIDHPHGGGEG+SK   
Sbjct: 121 IDKRCRATIGTVSNPEHGAKKLRKAGHSRWLGRRPVVRGVAMNPIDHPHGGGEGRSKSSG 180

Query: 181 --GHLSVSPWGKPTKGGYKTACPKKK 188
             G  S++PWGKPTKGGYKTA  KKK
Sbjct: 181 SHGRGSLTPWGKPTKGGYKTARLKKK 206
[Close]
BLAST of Spo08157.1 vs. NCBI nr
Match: gi|1021053016|gb|KZN10794.1| (hypothetical protein DCAR_003450 [Daucus carota subsp. sativus])

HSP 1 Score: 228.8 bits (582), Expect = 8.000e-57
Identity = 112/159 (70.44%), Postives = 134/159 (84.28%), Query Frame = 1 

		  

Query: 34  MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATR 93
           +++ + + D++SQ G+ MPISMMRIGTLIHNIELRP EGGKLVR+AGT AKILKEPSA++
Sbjct: 76  LTNPIFSLDISSQFGSCMPISMMRIGTLIHNIELRPGEGGKLVRAAGTAAKILKEPSASK 135

Query: 94  RVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDH 153
             L+RLPSG  K+IDT CRATIG+VSNP HG K+L+KAG+SRWLGRRPVVRGVAMNP+DH
Sbjct: 136 YCLIRLPSGREKLIDTSCRATIGTVSNPEHGTKRLRKAGHSRWLGRRPVVRGVAMNPVDH 195

Query: 154 PHGGGEGKSK-----GHLSVSPWGKPTKGGYKTACPKKK 188
           PHGGGEGKSK     G +S +PWGKPTK GYKT   K++
Sbjct: 196 PHGGGEGKSKSSGGHGGVSRTPWGKPTKSGYKTGPLKRR 234
[Close]
BLAST of Spo08157.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R565_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105680 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 6.300e-101
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 

		  

Query: 1   MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT 60
           MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT
Sbjct: 1   MAFFRARTTLLTTLRRTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGT 60

Query: 61  LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN 120
           LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN
Sbjct: 61  LIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSN 120

Query: 121 PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK 180
           PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK
Sbjct: 121 PSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSKGHLSVSPWGKPTKGGYK 180

Query: 181 TACPKKKNRVI 192
           TACPKKKNRVI
Sbjct: 181 TACPKKKNRVI 191
[Close]
BLAST of Spo08157.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC06_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126760 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.800e-79
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 1 

		  

Query: 34  MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATR 93
           MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRP EGGKLVRSAGT AKILKEPS++R
Sbjct: 1   MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPKEGGKLVRSAGTSAKILKEPSSSR 60

Query: 94  RVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDH 153
           RVLVRLPSGV K+IDTRCRATIGSVSNPSH AKKLKKAGNSRWLGRRPVVRGVAMNPIDH
Sbjct: 61  RVLVRLPSGVDKLIDTRCRATIGSVSNPSHRAKKLKKAGNSRWLGRRPVVRGVAMNPIDH 120

Query: 154 PHGGGEGKSKGHLSVSPWGKPTKGGYKTACPKKKNRVI 192
           PHGGGEGKSKGH SVSPWGKPTKGGYKTACPKKKNR+I
Sbjct: 121 PHGGGEGKSKGHQSVSPWGKPTKGGYKTACPKKKNRLI 158
[Close]
BLAST of Spo08157.1 vs. UniProtKB/TrEMBL
Match: A0A022RSE3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013825mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.500e-57
Identity = 128/206 (62.14%), Postives = 150/206 (72.82%), Query Frame = 1 

		  

Query: 1   MAFFRARTTLLTTLR-------RTFSSSSSTPVTEAK------PPKMSDYLLTNDLASQI 60
           MA  RAR    T LR       R+ SS +  PV E+K         M +++ T D++SQI
Sbjct: 1   MALLRARFPSSTLLRSLLSAPSRSLSSGAIEPVVESKGGVQSWKTTMMNHMATQDISSQI 60

Query: 61  GTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVL-VRLPSGVSKM 120
           G+ MP+S+MRIGT+IHNIE+RP +GGKLVR+AGT AKIL EP    R   + LPSG  KM
Sbjct: 61  GSCMPLSLMRIGTMIHNIEIRPGQGGKLVRAAGTEAKILTEPHRVARYCEILLPSGEKKM 120

Query: 121 IDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSK--- 180
           ID RCRATIG+VSNP HGAKKL+KAG+SRWLGRRPVVRGVAMNPIDHPHGGGEG+SK   
Sbjct: 121 IDKRCRATIGTVSNPEHGAKKLRKAGHSRWLGRRPVVRGVAMNPIDHPHGGGEGRSKSSG 180

Query: 181 --GHLSVSPWGKPTKGGYKTACPKKK 188
             G  S++PWGKPTKGGYKTA  KKK
Sbjct: 181 SHGRGSLTPWGKPTKGGYKTARLKKK 206
[Close]
BLAST of Spo08157.1 vs. UniProtKB/TrEMBL
Match: A0A166I699_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003450 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.600e-57
Identity = 112/159 (70.44%), Postives = 134/159 (84.28%), Query Frame = 1 

		  

Query: 34  MSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATR 93
           +++ + + D++SQ G+ MPISMMRIGTLIHNIELRP EGGKLVR+AGT AKILKEPSA++
Sbjct: 76  LTNPIFSLDISSQFGSCMPISMMRIGTLIHNIELRPGEGGKLVRAAGTAAKILKEPSASK 135

Query: 94  RVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDH 153
             L+RLPSG  K+IDT CRATIG+VSNP HG K+L+KAG+SRWLGRRPVVRGVAMNP+DH
Sbjct: 136 YCLIRLPSGREKLIDTSCRATIGTVSNPEHGTKRLRKAGHSRWLGRRPVVRGVAMNPVDH 195

Query: 154 PHGGGEGKSK-----GHLSVSPWGKPTKGGYKTACPKKK 188
           PHGGGEGKSK     G +S +PWGKPTK GYKT   K++
Sbjct: 196 PHGGGEGKSKSSGGHGGVSRTPWGKPTKSGYKTGPLKRR 234
[Close]
BLAST of Spo08157.1 vs. UniProtKB/TrEMBL
Match: A0A022PYN0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025000mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.300e-57
Identity = 127/206 (61.65%), Postives = 149/206 (72.33%), Query Frame = 1 

		  

Query: 1   MAFFRARTTLLTTLR-------RTFSSSSSTPVTEAK------PPKMSDYLLTNDLASQI 60
           MA  RAR    T LR       R+ SS +  P  E+K         M +++ T D++SQI
Sbjct: 1   MALLRARFPSSTLLRSLLSAPSRSLSSGAIEPAVESKGGVQSWKTTMMNHMATQDISSQI 60

Query: 61  GTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVL-VRLPSGVSKM 120
           G+ MP+S+MRIGT+IHNIE+RP +GGKLVR+AGT AKIL EP    R   + LPSG  KM
Sbjct: 61  GSCMPLSLMRIGTMIHNIEIRPGQGGKLVRAAGTEAKILTEPHRVARYCEILLPSGEKKM 120

Query: 121 IDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSK--- 180
           ID RCRATIG+VSNP HGAKKL+KAG+SRWLGRRPVVRGVAMNPIDHPHGGGEG+SK   
Sbjct: 121 IDKRCRATIGTVSNPEHGAKKLRKAGHSRWLGRRPVVRGVAMNPIDHPHGGGEGRSKSSG 180

Query: 181 --GHLSVSPWGKPTKGGYKTACPKKK 188
             G  S++PWGKPTKGGYKTA  KKK
Sbjct: 181 SHGRGSLTPWGKPTKGGYKTARLKKK 206
[Close]
BLAST of Spo08157.1 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=3 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.500e-50
Identity = 98/162 (60.49%), Postives = 127/162 (78.40%), Query Frame = 1 

		  

Query: 30  KPPKMSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEP 89
           +PP     +L  DL S++G S+P++ +R+GT +H+IE  P +G KL R+AGT AKI+KEP
Sbjct: 345 RPPAYRHEIL--DLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEP 404

Query: 90  SATRRVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMN 149
           ++  + LVRLPSGV K+ID+RCRATIG VSNP+HGA+KL+KAG SRW GRRP+VRGVAMN
Sbjct: 405 AS--QCLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMN 464

Query: 150 PIDHPHGGGEGKSK-GHLSVSPWGKPTKGGYKTACPKKKNRV 191
           P+DHPHGGGEG++K G  SVSPWGKPTK G++      K R+
Sbjct: 465 PVDHPHGGGEGRTKGGRPSVSPWGKPTKAGFRAGVGVGKRRI 502
[Close]
BLAST of Spo08157.1 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.500e-50
Identity = 98/162 (60.49%), Postives = 127/162 (78.40%), Query Frame = 1 

		  

Query: 30  KPPKMSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEP 89
           +PP     +L  DL S++G S+P++ +R+GT +H+IE  P +G KL R+AGT AKI+KEP
Sbjct: 345 RPPAYRHEIL--DLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEP 404

Query: 90  SATRRVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMN 149
           ++  + LVRLPSGV K+ID+RCRATIG VSNP+HGA+KL+KAG SRW GRRP+VRGVAMN
Sbjct: 405 AS--QCLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMN 464

Query: 150 PIDHPHGGGEGKSK-GHLSVSPWGKPTKGGYKTACPKKKNRV 191
           P+DHPHGGGEG++K G  SVSPWGKPTK G++      K R+
Sbjct: 465 PVDHPHGGGEGRTKGGRPSVSPWGKPTKAGFRAGVGVGKRRI 502
[Close]
BLAST of Spo08157.1 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.500e-50
Identity = 98/162 (60.49%), Postives = 127/162 (78.40%), Query Frame = 1 

		  

Query: 30  KPPKMSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEP 89
           +PP     +L  DL S++G S+P++ +R+GT +H+IE  P +G KL R+AGT AKI+KEP
Sbjct: 345 RPPAYRHEIL--DLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEP 404

Query: 90  SATRRVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMN 149
           ++  + LVRLPSGV K+ID+RCRATIG VSNP+HGA+KL+KAG SRW GRRP+VRGVAMN
Sbjct: 405 AS--QCLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMN 464

Query: 150 PIDHPHGGGEGKSK-GHLSVSPWGKPTKGGYKTACPKKKNRV 191
           P+DHPHGGGEG++K G  SVSPWGKPTK G++      K R+
Sbjct: 465 PVDHPHGGGEGRTKGGRPSVSPWGKPTKAGFRAGVGVGKRRI 502
[Close]
BLAST of Spo08157.1 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 189.9 bits (481), Expect = 2.600e-47
Identity = 89/143 (62.24%), Postives = 114/143 (79.72%), Query Frame = 1 

		  

Query: 47  IGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKM 106
           +G  +P++ + IGT +HNIE  P +G KL R+AGT A+I+++   T + +VRLPSGV K+
Sbjct: 359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKL 418

Query: 107 IDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSK-GH 166
           ID+RCRATIG VSN +HG +K  KAG SRWLGRRP+VRGVAMNP+DHPHGGGEG++K G 
Sbjct: 419 IDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKGGR 478

Query: 167 LSVSPWGKPTKGGYKTACPKKKN 189
            SVSPWGKPTKGG+KT   K++N
Sbjct: 479 PSVSPWGKPTKGGFKTVVRKRRN 501
[Close]
BLAST of Spo08157.1 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.700e-36
Identity = 85/157 (54.14%), Postives = 108/157 (68.79%), Query Frame = 1 

		  

Query: 33  KMSDYLLTNDLAS-QIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSA 92
           K+ D +++ +    +IG ++P+  +  GTLIHN+EL P  GG+LVR+AGT A+IL +   
Sbjct: 111 KVGDIIMSGENVDIKIGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGKEG- 170

Query: 93  TRRVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPI 152
            +   VRLPSG  ++ D  CRATIG VSN  H    L KAG SRWLGRRP VRG AMNP+
Sbjct: 171 -KWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNPV 230

Query: 153 DHPHGGGEGKSK-GHLS-VSPWGKPTKGGYKTACPKK 187
           DHPHGGGEGK+  GH S ++PWGKPT  GYKT   +K
Sbjct: 231 DHPHGGGEGKAPIGHPSPLTPWGKPTL-GYKTRKKRK 264
[Close]
BLAST of Spo08157.1 vs. TAIR (Arabidopsis)
Match: AT2G44065.1 (Ribosomal protein L2 family)

HSP 1 Score: 212.2 bits (539), Expect = 2.700e-55
Identity = 110/179 (61.45%), Postives = 134/179 (74.86%), Query Frame = 1 

		  

Query: 16  RTFSSSSSTPVTEAKPPKMSDYLLTNDLASQIGTSMPISMMRIGTLIHNIELRPSEGGKL 75
           R FS+  +    ++   +M + +L  D+ S IG+SMP+ MMRIGT+IHNIE+ P +G K+
Sbjct: 28  RNFSTGFADTQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKM 87

Query: 76  VRSAGTVAKILKEPSATRRVLVRLPSGVSKMIDTRCRATIGSVSNPSHGAKKLKKAGNSR 135
           VR+AGT AKILKEP A  + L++LPSG +K I+ +CRATIG+VSNPSHG KKL KAG SR
Sbjct: 88  VRAAGTNAKILKEP-AKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSR 147

Query: 136 WLGRRPVVRGVAMNPIDHPHGGGEGKSK-----GHLSVSPWGKPTKGGYKTACPKKKNR 190
           WLG RP VRGVAMNP DHPHGGGEGKSK     G  SVSPWGKP KGGYK+A  KKK +
Sbjct: 148 WLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPWGKPCKGGYKSASVKKKKK 205
[Close]
BLAST of Spo08157.1 vs. TAIR (Arabidopsis)
Match: ATCG00830.1 (ribosomal protein L2)

HSP 1 Score: 126.3 bits (316), Expect = 2.000e-29
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 1 

		  

Query: 46  QIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSK 105
           ++G ++P++ M +GT IHNIE+    GG+L R+AG VAK++ +    +   ++LPSG  +
Sbjct: 123 KMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEG--KSATLKLPSGEVR 182

Query: 106 MIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSK-- 165
           +I   C AT+G V N     K L +AG+  WLG+RPVVRGV MNP+DHPHGGGEG++   
Sbjct: 183 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG 242

Query: 166 GHLSVSPWGKPTKG 178
               V+PWG P  G
Sbjct: 243 RKKPVTPWGYPALG 254
[Close]
BLAST of Spo08157.1 vs. TAIR (Arabidopsis)
Match: ATCG01310.1 (ribosomal protein L2)

HSP 1 Score: 126.3 bits (316), Expect = 2.000e-29
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 1 

		  

Query: 46  QIGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSK 105
           ++G ++P++ M +GT IHNIE+    GG+L R+AG VAK++ +    +   ++LPSG  +
Sbjct: 123 KMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEG--KSATLKLPSGEVR 182

Query: 106 MIDTRCRATIGSVSNPSHGAKKLKKAGNSRWLGRRPVVRGVAMNPIDHPHGGGEGKSK-- 165
           +I   C AT+G V N     K L +AG+  WLG+RPVVRGV MNP+DHPHGGGEG++   
Sbjct: 183 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG 242

Query: 166 GHLSVSPWGKPTKG 178
               V+PWG P  G
Sbjct: 243 RKKPVTPWGYPALG 254
[Close]
BLAST of Spo08157.1 vs. TAIR (Arabidopsis)
Match: AT3G51190.1 (Ribosomal protein L2 family)

HSP 1 Score: 92.0 bits (227), Expect = 4.100e-19
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1 

		  

Query: 47  IGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKM 106
           +G  +P+  +  G +I N+EL   + G L R++G  A ++     +    V+LPSG  K+
Sbjct: 99  VGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKI 158

Query: 107 IDTRCRATIGSVSNPSHGAKKLKKAGNS--RWLGRR---PVVRGVAMNPIDHPHGGGEGK 166
           + + CRA IG V+      K L KAGN+  ++  +R   PVVRGVAMNP++HPHGGG  +
Sbjct: 159 LPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQ 218

Query: 167 SKGHLS 168
             GH S
Sbjct: 219 HIGHAS 224
[Close]
BLAST of Spo08157.1 vs. TAIR (Arabidopsis)
Match: AT2G18020.1 (Ribosomal protein L2 family)

HSP 1 Score: 82.4 bits (202), Expect = 3.300e-16
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 1 

		  

Query: 47  IGTSMPISMMRIGTLIHNIELRPSEGGKLVRSAGTVAKILKEPSATRRVLVRLPSGVSKM 106
           +G  +P+  +  G ++ N+E    + G L R++G  A ++     +    ++LPSG  K+
Sbjct: 98  VGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKI 157

Query: 107 IDTRCRATIGSVSNPSHGAKKLKKAGNS--RWLGRR---PVVRGVAMNPIDHPHGGGEGK 166
           + + CRA IG V+      K + KAGN+  ++  +R   P VRGVAMNP++HPHGGG  +
Sbjct: 158 VPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQ 217

Query: 167 SKGHLS 168
             GH S
Sbjct: 218 HIGHAS 223
The following BLAST results are available for this feature:
BLAST of Spo08157.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203658|gb|KNA14638.1|9.1e-101100.hypothetical protein SOVF_1056... [more]
gi|731367640|ref|XP_010695718.1|5.0e-9191.6PREDICTED: 60S ribosomal prote... [more]
gi|870844531|gb|KMS97477.1|9.8e-7994.3hypothetical protein BVRB_5g12... [more]
gi|604344160|gb|EYU42959.1|3.6e-5762.1hypothetical protein MIMGU_mgv... [more]
gi|1021053016|gb|KZN10794.1|8.0e-5770.4hypothetical protein DCAR_0034... [more]
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BLAST of Spo08157.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R565_SPIOL6.3e-101100.Uncharacterized protein OS=Spi... [more]
A0A0J8BC06_BETVU6.8e-7994.3Uncharacterized protein OS=Bet... [more]
A0A022RSE3_ERYGU2.5e-5762.1Uncharacterized protein OS=Ery... [more]
A0A166I699_DAUCA5.6e-5770.4Uncharacterized protein OS=Dau... [more]
A0A022PYN0_ERYGU7.3e-5761.6Uncharacterized protein OS=Ery... [more]
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BLAST of Spo08157.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RM02_ORYSI2.5e-5060.460S ribosomal protein L2, mito... [more]
RM02_ORYSA2.5e-5060.460S ribosomal protein L2, mito... [more]
RM02_ORYSJ2.5e-5060.460S ribosomal protein L2, mito... [more]
RM02_MARPO2.6e-4762.260S ribosomal protein L2, mito... [more]
RL2_DICT62.7e-3654.150S ribosomal protein L2 OS=Di... [more]
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BLAST of Spo08157.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G44065.12.7e-5561.4Ribosomal protein L2 family[more]
ATCG00830.12.0e-2946.2ribosomal protein L2[more]
ATCG01310.12.0e-2946.2ribosomal protein L2[more]
AT3G51190.14.1e-1939.6Ribosomal protein L2 family[more]
AT2G18020.13.3e-1635.7Ribosomal protein L2 family[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 43..181
score: 1.8
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMsTIGR01171TIGR01171coord: 43..188
score: 1.5
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 47..186
score: 8.02
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 44..118
score: 9.7
IPR014726Ribosomal protein L2, domain 3GENE3D4.10.950.10coord: 119..188
score: 1.4
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 47..172
score: 1.8
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 45..174
score: 1.4
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 141..152
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006508 proteolysis
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0051788 response to misfolded protein
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0009414 response to water deprivation
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009853 photorespiration
biological_process GO:0009737 response to abscisic acid
cellular_component GO:0005576 extracellular region
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003677 DNA binding
RNA-Seq Expression