Spo08070 (gene)

Overview
NameSpo08070
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPre-rRNA-processing protein TSR2, putative
Locationchr5 : 13838118 .. 13840662 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAGTAACTATGGCCGAATATTTGGCCGGGGTTTTGCAACTCCAGTCATCCAAATTCTAGGGTTTTTTATCCTTTCCTCTCTCCTCTTCTACAATCGGGAGCTTCGACCTCAAACAATTGGTCATCAAATTAAGAATGGATGAGCCAAAGAAACCGCAGGTATTACCAACGGTGGCAATTCCACACTTCCAAGAAGGCATATCATTGGTGTTCTCAAAATGGTGGGCCCTTCAAATGGCTGTTCAAAACGAGTGGGGAGGCCATGATTCTCATACTAAATCTCTCAATTTCTCCTCTGATATCTTTAATTTCTTCTACAAACCTAATCGCAAAGGTATAATTCCTTCAATTTTTCGTTTTTTTTGTTGCTAAATTAGTAGAAATGTTTTCTTCTATAATTGAATATCGCGTACTAAGCTACCTATAATCGTATGATTATTTTAATTTATTTGGATATGGTTCTTGCCTAATTTGGACTTTGCCTGAAATTTTGGTTTAAAATTTAACGGTTTTCATATTGCTGTCTTTCTGGGTTATTTGGAGGGGTTGCATTTGACTGCTATTTGAATTTGATTATTATTTTTTGAATTGTTTGTATTTTGATTGTTTTATTCAGAACCCATATACATAGATGATTTAGAAGAAGAACTAAACGTAGGCTTGGATTCTTTCAATACAACTGCAGATGACGGCAGCGTCGAGGAGGTTATTGCTTCATTTAGTTTTTGTCACCTTCTCCAAGTTACATGCTGAATTTCCATGTTGAATTGAGTTGAAATGCTTAAGATTTTGTATCAGCAATAATGGGTTTATTCTAATTTAGACTCTTGTATCTGCTTTGTAATGTGTATAGGTGGCAGTGCAATTGATGGTTATGTATGAAGAGTGTTTGGAAGGGAACTATCAATCAATTCAGAAGTTAAAGCAAATGAAATCGCAGCCTGTTCTTCGTGTAGAACAGGTAATTAGCATTTTTCTATCATGTTTTTTCATTTTAATGAGGATTTAGATGACTATGCAACAACTACGTTAATTGGAGAATTTGGAGCTATGTGCAACACATTGTTATTTGTGATTTTTTACACTCTGTATCTGGATTGGGAGCTTGGCATGATGTTCTTGGCGTGAAGAATTTACATGAGCAGTGAAGGTCTTAATATGTATTCCTTAATACGGAGTACTCAATAGTGGAGAAGTTTGTTGAAGTTATGATCTTTTTTAAAAATCAAAACATAACGTGGATCAATAAACTGTCCGGGAATATGAAACTAGAGAAGAGGATTTACCCAGTTTTGATACTCTAGGCCTATCCTTAAGATCTCTACTCTGGGAAAGGTTCTGGATAGCACTCATTGTGAGCGTTTAGATTACGGAGTATGTTTAGAAGCTAGGTGACTATGTATCCAGTATATACTAAAACTAACTATGTTTCTGTTGTACGGAGTATCATCTTGAAAATAGTTGTTACCCCTGAAATGATGTTGCAAAGTTGTACATGCATTTTGAGAGGATATTTGGTTTACTGATTTAGAGGCATGGACATGAATCAAACAACAACCGGTACTTTGTATTTGGTTCAAATTGATTTTATTTCCGTATCAAGCCTAATCACATTCACCGAAATTAAACCCCCCCACCCCCACCCCCACCCCCCACCTTGGGTTTCAAAAAGACAAAAAGCCTTATCTGGAACCTGGAGATAATGGAAACCACCTCCACTGGCGGCACCACCACCACAATCACACCCATTTCACTAGTTCACCCATCATATCTACCCACCTTGTTATCAGCCTTATCACAACCACTTCACTGACACAGCAGCATTACAACCATTTCTGCTTTTTAGGAGAGAGGAAGAAGAGTTGATTTGCTTGGTTGTAAGGGCTAAGGAGGAGGAGGGGAGATAGGAGTGTGTATGTGAGGAATGCTTTTAGCTAGATATGTGGTTTTATAGAACTTGAACCTAACAGGAGTAATAAATAAGAGAATGGTTTCTTCCGGAATTTCACCAAACGCACTTGAATGTTATGATCACACAATGAATTGCCTGGACTTCTTCCCTTTTCTCCTTGATCGTTGTTCGCTATTGATGTTATACCCCTTCAATGCCTCATTACAGTGGGTAGTTGTTCTTGGTGGAGTCGAGGAGTATATGCTTTACGGTTTATCACTAGTAGTTCACTAATTCCAGCCTGAACCTGGACTTTGATCCGAAGCTTATACATATAGGGGGGGGGGGGAGACTCATTCTAGTTACGATGTCATTGATCCTTATTTTGGATTTTAGAAACTGTAATATGTTGTTTTGCTTCTGTTGAAGTGCAAGTTACTATATGACAGGATGCAAGTGACAGTGATGAGGGTGAGGATGAAAATGAGAATAGCATGGGGAATGACGAGGCATCAAATATGATGGTAGATACACCAGAGTCCTTTCTAAGTACAAACTCCACAGAAACACAGAAAAACAATAGCAGACACCAGCAGATGGAAGAAGCTGAAGATGGATGGACTGTAGTTCCCTCAAGAAAGAGCAAGGGTTGA

mRNA sequence

CTTAGTAACTATGGCCGAATATTTGGCCGGGGTTTTGCAACTCCAGTCATCCAAATTCTAGGGTTTTTTATCCTTTCCTCTCTCCTCTTCTACAATCGGGAGCTTCGACCTCAAACAATTGGTCATCAAATTAAGAATGGATGAGCCAAAGAAACCGCAGGTATTACCAACGGTGGCAATTCCACACTTCCAAGAAGGCATATCATTGGTGTTCTCAAAATGGTGGGCCCTTCAAATGGCTGTTCAAAACGAGTGGGGAGGCCATGATTCTCATACTAAATCTCTCAATTTCTCCTCTGATATCTTTAATTTCTTCTACAAACCTAATCGCAAAGAACCCATATACATAGATGATTTAGAAGAAGAACTAAACGTAGGCTTGGATTCTTTCAATACAACTGCAGATGACGGCAGCGTCGAGGAGGTGGCAGTGCAATTGATGGTTATGTATGAAGAGTGTTTGGAAGGGAACTATCAATCAATTCAGAAGTTAAAGCAAATGAAATCGCAGCCTGTTCTTCGTGTAGAACAGGATGCAAGTGACAGTGATGAGGGTGAGGATGAAAATGAGAATAGCATGGGGAATGACGAGGCATCAAATATGATGGTAGATACACCAGAGTCCTTTCTAAGTACAAACTCCACAGAAACACAGAAAAACAATAGCAGACACCAGCAGATGGAAGAAGCTGAAGATGGATGGACTGTAGTTCCCTCAAGAAAGAGCAAGGGTTGA

Coding sequence (CDS)

ATGGATGAGCCAAAGAAACCGCAGGTATTACCAACGGTGGCAATTCCACACTTCCAAGAAGGCATATCATTGGTGTTCTCAAAATGGTGGGCCCTTCAAATGGCTGTTCAAAACGAGTGGGGAGGCCATGATTCTCATACTAAATCTCTCAATTTCTCCTCTGATATCTTTAATTTCTTCTACAAACCTAATCGCAAAGAACCCATATACATAGATGATTTAGAAGAAGAACTAAACGTAGGCTTGGATTCTTTCAATACAACTGCAGATGACGGCAGCGTCGAGGAGGTGGCAGTGCAATTGATGGTTATGTATGAAGAGTGTTTGGAAGGGAACTATCAATCAATTCAGAAGTTAAAGCAAATGAAATCGCAGCCTGTTCTTCGTGTAGAACAGGATGCAAGTGACAGTGATGAGGGTGAGGATGAAAATGAGAATAGCATGGGGAATGACGAGGCATCAAATATGATGGTAGATACACCAGAGTCCTTTCTAAGTACAAACTCCACAGAAACACAGAAAAACAATAGCAGACACCAGCAGATGGAAGAAGCTGAAGATGGATGGACTGTAGTTCCCTCAAGAAAGAGCAAGGGTTGA

Protein sequence

MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTVVPSRKSKG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08070.1Spo08070.1mRNA


Homology
[Close]
BLAST of Spo08070.1 vs. NCBI nr
Match: gi|902112055|gb|KNA03795.1| (hypothetical protein SOVF_205590 [Spinacia oleracea])

HSP 1 Score: 395.2 bits (1014), Expect = 6.800e-107
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

		  

Query: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF
Sbjct: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120

Query: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180
           QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ
Sbjct: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180

Query: 181 QMEEAEDGWTVVPSRKSKG 200
           QMEEAEDGWTVVPSRKSKG
Sbjct: 181 QMEEAEDGWTVVPSRKSKG 199
[Close]
BLAST of Spo08070.1 vs. NCBI nr
Match: gi|902161410|gb|KNA06574.1| (hypothetical protein SOVF_179760 [Spinacia oleracea])

HSP 1 Score: 315.1 bits (806), Expect = 8.900e-83
Identity = 164/199 (82.41%), Postives = 167/199 (83.92%), Query Frame = 1 

		  

Query: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           M+EPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKS+NFSSDIFNFF
Sbjct: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSVNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM                  
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM------------------ 120

Query: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180
                       DASDSD GEDEN+NSMGNDEASNMMVDTPESFLSTNSTETQKNN RHQ
Sbjct: 121 ------------DASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 169

Query: 181 QMEEAEDGWTVVPSRKSKG 200
           QMEEAEDGWTVVPSRKSKG
Sbjct: 181 QMEEAEDGWTVVPSRKSKG 169
[Close]
BLAST of Spo08070.1 vs. NCBI nr
Match: gi|731324480|ref|XP_010672991.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 223.0 bits (567), Expect = 4.600e-55
Identity = 124/198 (62.63%), Postives = 153/198 (77.27%), Query Frame = 1 

		  

Query: 4   PKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKP 63
           P+ P VL   AIP FQEGISLVFS+WW LQMAV+N  GG  S  KSL+FSS +F FF++P
Sbjct: 30  PRFP-VLAAEAIPQFQEGISLVFSQWWGLQMAVENGGGGPHSREKSLDFSSRVFEFFHQP 89

Query: 64  NRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK 123
           +RKEPIYIDDLE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K
Sbjct: 90  DRKEPIYIDDLENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVK 149

Query: 124 --SQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQ 183
             S  ++R + + SD D+ EDE++ S+ ND+ASNMMVD   S  +TN+++T K NS HQQ
Sbjct: 150 PVSGTLVRKDPNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSK-NSIHQQ 209

Query: 184 MEEAEDGWTVVPSRKSKG 200
           M EAEDGWTVVPSRKSKG
Sbjct: 210 MTEAEDGWTVVPSRKSKG 225
[Close]
BLAST of Spo08070.1 vs. NCBI nr
Match: gi|870864015|gb|KMT15148.1| (hypothetical protein BVRB_3g062620 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 178.3 bits (451), Expect = 1.300e-41
Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 1 

		  

Query: 14  AIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDD 73
           AIP FQEGISLVFS+WW LQMAV+N  GG                        EPIYIDD
Sbjct: 20  AIPQFQEGISLVFSQWWGLQMAVEN--GG------------------------EPIYIDD 79

Query: 74  LEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK--SQPVLRVE 133
           LE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K  S  ++R +
Sbjct: 80  LENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVKPVSGTLVRKD 139

Query: 134 QDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTV 193
            + SD D+ EDE++ S+ ND+ASNMMVD   S  +TN+++T K NS HQQM EAEDGWTV
Sbjct: 140 PNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSK-NSIHQQMTEAEDGWTV 180

Query: 194 VPSRKSKG 200
           VPSRKSKG
Sbjct: 200 VPSRKSKG 180
[Close]
BLAST of Spo08070.1 vs. NCBI nr
Match: gi|590642915|ref|XP_007030654.1| (Pre-rRNA-processing protein TSR2, putative [Theobroma cacao])

HSP 1 Score: 176.0 bits (445), Expect = 6.400e-41
Identity = 92/184 (50.00%), Postives = 118/184 (64.13%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           FQEGI L+ S+WWAL  AV+NEWGG DS  K+    SD+ +FF    R EP+YIDDLE  
Sbjct: 14  FQEGIGLILSRWWALTAAVENEWGGRDSRGKANMLYSDVISFFTNTKRAEPLYIDDLENI 73

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPV--LRVEQDAS 137
           L  GL S NT  DDGS+EEVA +LM+M+EECLEGNYQS++KL+     PV  +R   +  
Sbjct: 74  LREGLHSLNTDVDDGSIEEVAEKLMIMHEECLEGNYQSVEKLRTTNPPPVAHVRPSTEED 133

Query: 138 DSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTVVPSR 197
           + D+ +D+ ++SM  D  +NMMVD P S  S N      +     Q  EA DGW VV SR
Sbjct: 134 EDDDNDDDEDDSMDADNTTNMMVDVPNSHSSLNPVSMPTDEPGPNQAAEAADGWVVVSSR 193

Query: 198 KSKG 200
           ++KG
Sbjct: 194 RNKG 197
[Close]
BLAST of Spo08070.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q941_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205590 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 4.700e-107
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

		  

Query: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF
Sbjct: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120

Query: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180
           QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ
Sbjct: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180

Query: 181 QMEEAEDGWTVVPSRKSKG 200
           QMEEAEDGWTVVPSRKSKG
Sbjct: 181 QMEEAEDGWTVVPSRKSKG 199
[Close]
BLAST of Spo08070.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_179760 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 6.200e-83
Identity = 164/199 (82.41%), Postives = 167/199 (83.92%), Query Frame = 1 

		  

Query: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           M+EPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKS+NFSSDIFNFF
Sbjct: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSVNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM                  
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM------------------ 120

Query: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180
                       DASDSD GEDEN+NSMGNDEASNMMVDTPESFLSTNSTETQKNN RHQ
Sbjct: 121 ------------DASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 169

Query: 181 QMEEAEDGWTVVPSRKSKG 200
           QMEEAEDGWTVVPSRKSKG
Sbjct: 181 QMEEAEDGWTVVPSRKSKG 169
[Close]
BLAST of Spo08070.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNP9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062620 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.200e-55
Identity = 124/198 (62.63%), Postives = 153/198 (77.27%), Query Frame = 1 

		  

Query: 4   PKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKP 63
           P+ P VL   AIP FQEGISLVFS+WW LQMAV+N  GG  S  KSL+FSS +F FF++P
Sbjct: 30  PRFP-VLAAEAIPQFQEGISLVFSQWWGLQMAVENGGGGPHSREKSLDFSSRVFEFFHQP 89

Query: 64  NRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK 123
           +RKEPIYIDDLE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K
Sbjct: 90  DRKEPIYIDDLENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVK 149

Query: 124 --SQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQ 183
             S  ++R + + SD D+ EDE++ S+ ND+ASNMMVD   S  +TN+++T K NS HQQ
Sbjct: 150 PVSGTLVRKDPNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSK-NSIHQQ 209

Query: 184 MEEAEDGWTVVPSRKSKG 200
           M EAEDGWTVVPSRKSKG
Sbjct: 210 MTEAEDGWTVVPSRKSKG 225
[Close]
BLAST of Spo08070.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062620 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.000e-42
Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 1 

		  

Query: 14  AIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDD 73
           AIP FQEGISLVFS+WW LQMAV+N  GG                        EPIYIDD
Sbjct: 20  AIPQFQEGISLVFSQWWGLQMAVEN--GG------------------------EPIYIDD 79

Query: 74  LEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK--SQPVLRVE 133
           LE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K  S  ++R +
Sbjct: 80  LENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVKPVSGTLVRKD 139

Query: 134 QDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTV 193
            + SD D+ EDE++ S+ ND+ASNMMVD   S  +TN+++T K NS HQQM EAEDGWTV
Sbjct: 140 PNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSK-NSIHQQMTEAEDGWTV 180

Query: 194 VPSRKSKG 200
           VPSRKSKG
Sbjct: 200 VPSRKSKG 180
[Close]
BLAST of Spo08070.1 vs. UniProtKB/TrEMBL
Match: A0A061F2C1_THECC (Pre-rRNA-processing protein TSR2, putative OS=Theobroma cacao GN=TCM_026420 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.500e-41
Identity = 92/184 (50.00%), Postives = 118/184 (64.13%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           FQEGI L+ S+WWAL  AV+NEWGG DS  K+    SD+ +FF    R EP+YIDDLE  
Sbjct: 14  FQEGIGLILSRWWALTAAVENEWGGRDSRGKANMLYSDVISFFTNTKRAEPLYIDDLENI 73

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPV--LRVEQDAS 137
           L  GL S NT  DDGS+EEVA +LM+M+EECLEGNYQS++KL+     PV  +R   +  
Sbjct: 74  LREGLHSLNTDVDDGSIEEVAEKLMIMHEECLEGNYQSVEKLRTTNPPPVAHVRPSTEED 133

Query: 138 DSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTVVPSR 197
           + D+ +D+ ++SM  D  +NMMVD P S  S N      +     Q  EA DGW VV SR
Sbjct: 134 EDDDNDDDEDDSMDADNTTNMMVDVPNSHSSLNPVSMPTDEPGPNQAAEAADGWVVVSSR 193

Query: 198 KSKG 200
           ++KG
Sbjct: 194 RNKG 197
[Close]
BLAST of Spo08070.1 vs. ExPASy Swiss-Prot
Match: TSR2_YEAST (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR2 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-9
Identity = 48/175 (27.43%), Postives = 85/175 (48.57%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F+ G+S+V  KW AL +AV+N WGG DS  K    +  + + F      +   I+  E  
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEKVVDAALIE--ETL 91

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKL--------KQMKSQPVLR 137
           L   +D F T  +D S   +AV+++ +Y +C   NY  ++KL        +  KS+ V+ 
Sbjct: 92  LYAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVH 151

Query: 138 VEQDASDSDEG----EDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 181
           +E D  + DE     +DE+E+   ++   +++   PE  +  +  E  +   R +
Sbjct: 152 IEGDDDEDDEDVEDYDDEDEDEEMDEVVPDLVSSKPEPIVDEDGFELVQPKGRRK 204
[Close]
BLAST of Spo08070.1 vs. ExPASy Swiss-Prot
Match: TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.200e-8
Identity = 53/184 (28.80%), Postives = 84/184 (45.65%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F E +  V   W  LQ+AV N +GG  S  K+      +  +F      +P  ++D   E
Sbjct: 12  FSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGDLQPDEVEDFISE 71

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNY----QSIQKLKQMK-SQPVLRVEQ 137
           L    + F+T  DDGS+ +VA Q+  M+++C +G      + I KL Q K S    +   
Sbjct: 72  LMN--NEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 131

Query: 138 DASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTVV 197
             +  D+ +D+ E +M          D        + + T  N+  H+  EE +DGWTVV
Sbjct: 132 AQTPQDDDDDDEEEAM----------DCEGGSAGASVSSTAVNDLHHE--EEEDDGWTVV 181
[Close]
BLAST of Spo08070.1 vs. ExPASy Swiss-Prot
Match: TSR2_XENLA (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis GN=tsr2 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.200e-8
Identity = 49/179 (27.37%), Postives = 82/179 (45.81%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F+E    V   W  LQ+AV+N +GG  S  K+      I  +F      E   ++D    
Sbjct: 12  FREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVED--SI 71

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPVLRVEQDASDS 137
           + +  D F+T  +DGS   VA QL V++ +C +G   ++Q      +Q    V     + 
Sbjct: 72  MGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKVQEV 131

Query: 138 DEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTVVPSRK 197
              +DE E+S   +EA +       S  ++ S     +++  ++ E  +DGWTVV  +K
Sbjct: 132 TPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEEPEDDGWTVVRRKK 188
[Close]
BLAST of Spo08070.1 vs. ExPASy Swiss-Prot
Match: TSR2_HUMAN (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.400e-6
Identity = 48/185 (25.95%), Postives = 91/185 (49.19%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F+ G+      W ALQ+AV+N +GG  S  K+      + ++F    R   + +D++E+ 
Sbjct: 12  FRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFM---RNADLELDEVEDF 71

Query: 78  LNVGL-DSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPVLRVEQDASD 137
           L   L + F+T  +DGS+ +V+ QL  M+     G+  +++++    +Q   +V   A  
Sbjct: 72  LGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTATALK 131

Query: 138 SDEGEDENENSMGNDEASNMMVDTPESFLSTNST--ETQKNNSRHQQMEE---AEDGWTV 197
           +    DE+E+ +  D    M V       +T+    + + ++   Q ++E    EDGWT+
Sbjct: 132 TARETDEDEDDV--DSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIVEDGWTI 191
[Close]
BLAST of Spo08070.1 vs. TAIR (Arabidopsis)
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 112.8 bits (281), Expect = 2.400e-25
Identity = 70/182 (38.46%), Postives = 108/182 (59.34%), Query Frame = 1 

		  

Query: 19  QEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIY-IDDLEEE 78
           +EGI L+  +W A++ AV+N WGG DS  K+    + +F+FF +   K+P+  I+ L + 
Sbjct: 16  KEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQS--KDPVKDIEKLGDL 75

Query: 79  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPVLRVEQDASDS 138
           L+ GLD  NTTA+DGSV+EVA  L+ +YE+C  GNY+ +++L+   SQ    V + ++  
Sbjct: 76  LDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTSASVVKVSNGD 135

Query: 139 DEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQQMEEAEDGWTVVPSRKS 198
           DE  D+ +    +D+ ++MMVD             QK  +       A+DGWTVV SRK+
Sbjct: 136 DEESDDED----DDQTTDMMVD----------ASNQKQEAMPVDEPVADDGWTVVSSRKN 181

Query: 199 KG 200
           KG
Sbjct: 196 KG 181
[Close]
BLAST of Spo08070.1 vs. TAIR (Arabidopsis)
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 78.2 bits (191), Expect = 6.400e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 19  QEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEEL 78
           Q  I  + S+W  LQMAV+N+WGGHDS  KS   + ++F+   + N    I ++++E  L
Sbjct: 32  QRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSN---VITVEEIENLL 91

Query: 79  NVG-LDSFNTTADDGSVEEVAVQLMVMYEECLEG 112
           +   L SFNT  +DGS+EEVA QLM+++EE L G
Sbjct: 92  HESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122
The following BLAST results are available for this feature:
BLAST of Spo08070.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902112055|gb|KNA03795.1|6.8e-107100.hypothetical protein SOVF_2055... [more]
gi|902161410|gb|KNA06574.1|8.9e-8382.4hypothetical protein SOVF_1797... [more]
gi|731324480|ref|XP_010672991.1|4.6e-5562.6PREDICTED: pre-rRNA-processing... [more]
gi|870864015|gb|KMT15148.1|1.3e-4156.9hypothetical protein BVRB_3g06... [more]
gi|590642915|ref|XP_007030654.1|6.4e-4150.0Pre-rRNA-processing protein TS... [more]
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BLAST of Spo08070.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q941_SPIOL4.7e-107100.Uncharacterized protein OS=Spi... [more]
A0A0K9QGY0_SPIOL6.2e-8382.4Uncharacterized protein OS=Spi... [more]
A0A0J8CNP9_BETVU3.2e-5562.6Uncharacterized protein OS=Bet... [more]
A0A0J8CT80_BETVU9.0e-4256.9Uncharacterized protein OS=Bet... [more]
A0A061F2C1_THECC4.5e-4150.0Pre-rRNA-processing protein TS... [more]
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BLAST of Spo08070.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TSR2_YEAST1.0e-927.4Pre-rRNA-processing protein TS... [more]
TSR2_DANRE3.2e-828.8Pre-rRNA-processing protein TS... [more]
TSR2_XENLA4.2e-827.3Pre-rRNA-processing protein TS... [more]
TSR2_HUMAN1.4e-625.9Pre-rRNA-processing protein TS... [more]
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BLAST of Spo08070.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G27990.12.4e-2538.4Pre-rRNA-processing protein TS... [more]
AT3G22510.16.4e-1544.6Pre-rRNA-processing protein TS... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 18..98
score: 3.3
NoneNo IPR availablePANTHERPTHR21250UNCHARACTERIZEDcoord: 15..199
score: 5.9
NoneNo IPR availablePANTHERPTHR21250:SF1SUBFAMILY NOT NAMEDcoord: 15..199
score: 5.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0045694 regulation of embryo sac egg cell differentiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0050826 response to freezing
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0051604 protein maturation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0000338 protein deneddylation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0016579 protein deubiquitination
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0033036 macromolecule localization
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006364 rRNA processing
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0071702 organic substance transport
biological_process GO:0016571 histone methylation
biological_process GO:0000741 karyogamy
biological_process GO:0019915 lipid storage
biological_process GO:0010074 maintenance of meristem identity
biological_process GO:0009933 meristem structural organization
biological_process GO:0006312 mitotic recombination
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0001510 RNA methylation
cellular_component GO:0009328 phenylalanine-tRNA ligase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005768 endosome
cellular_component GO:0009295 nucleoid
cellular_component GO:0016020 membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0009536 plastid
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0005829 cytosol
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0005515 protein binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression