Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGCGCGCGTGGTTCACGCGCCATAAATATACCAACTTTTTTTCTCTATACTTTCATTCTATCCTGCGGAGACAACTACCATTTGTCCACCAGAAATCAAATCCACAGAGTTCCTCTGCTCAAAAACCAAAGAAAATCTGACGATGGAGGTGCGACGGTGGTGTGCGACTCTACATCGATCTTGTCGCCGATCTCTCTCCGTCCTTACACTCGCCGGCGATCTCTCCTCCCCAGACACCGGAGATTATGTGAGTATATTTTTCATATTCAATGTCAAGAAGCCTCATTGTTCCTGCAATTGCTTAACCTTCTTGCGATTTCATCTCTCTCAATTCGCGCAGGTATTGATTGAACTTCAGTTACTAATTTGTTCGATTTTTTGGATTGAAGTTCTTATTTTTTTATCGAAATTTGGTCGATTATTTAGGGTTTTGTTTTGGTCGAATTCATGCTTGATTGAACATATTGGAATTAATTTATGATTTTCATTTTGTGAATTTGTTACATTGTTTGCGATTTTGATATCTAAATTTGGGGTTTCAGATTTTGATTTTTTAAGGATTTCAGTTTTTAGGGTTTTAATCTATTTTTTCTTGTTTTTTTACATGTGTTTGTTTTTATTTCAGAAGATTTATGGTAAATTTTGAATGATATAAAAATATGAAGTAGTTAAGTTGTTATTTCAGTTTTACAAGGTTGAGATGAGAAGAATGGAGTTTGCTCCTATTTTATGATTGTTTACTTTCATAGGTTGTATTGTTTACTTTTCTAAGATTTTTAGAAGTTTGGAGTTTCTCTTGCAATCCTCTCGTCTATGAGAATTGAGAAGTAAAATCTCAGGCCTTTAGTTCTTGTTTCTCTTTCTCATATTAGGCTCTTAATATCTAGTCTCAAGTAACCTGAAATACTCCGAGAAACTGCCTATTACTGAATTCAGTAGTCTCACAAGGAATCAATCCGCAATGATAGGTGCCCTTACTTGTGTTCTTGTTATGGTTTAATAGCTATAACAAACCTGATACGGTTGGTAATTTAACCTATATTGATGTTATAGTTTTAGGGTGATGACAAATCTGTACTAAAATTTAGGTAAATATGCCTCATTGCCAAACCTGAAAAGACCCGCTCTGTATTTGATTGCATTTCGGAATTTTAAGCTGAAACACAATTGTGGATATCAGAATTCGGAAGCAAAAGTGTTCTGCATTGATATAAGCCTAAATTATATCTATAGTTTGATAATTTACTTGTGGGAACATGAGGATCTGTTGATAGAATTTTATAGTCAAATGTAAGTAGTTTTGACAGGGTGGTGTTTGAGGTTAGGGAAGAAAGAACTCGGTCATAACATTGACATGGATGGGAAGTTAGCTCCTGATGTGATAGTTGGAGGTTTAGGAGCCTTATCAAATCAACTTCCGCTTGATCTCCACGCGACATACACTTATGAGGTTATCATTACTGTTCCTAAGGAATGATATAAGCATCTTATGCATTAGAAATTGTATAGTCAACCACTTAATCCTGTTTTTACAACCCCTTGCTTGGTTGCATTTAGTAAGAGATGTATGTCATTGGCACATTGAGTTCCTTCTTGTTACCACTGATGTTATTGACTATTGTTATCCATAATCAGCCATACGGTTGCTTCTGCTTGTATTAATGTCTGAACATTCTCTTTCCATCTGATATATTCTGCACATTATTGCCAAGATGCAACTTTTACTCCACATGGCCGTATTATAATATCATACTTTTCATTAAATTAATTTACTCTTTAGTCTTCACTTAAATGGTTTTAAAATAATCGGACTGCAGGCACTTCGGAATTGTACCCTTTGCATGTTCTCAAAAAATCAGCCAGGACACCTTAAATAATACTACATATAGTTTACTTTTGCAGAAATTTAGTTTACTTTTATAGAGATTTAGTATACTTTAAGATAACTAGGCATTGGAAGAAATCAAGGCGGTGTTTTTGCTTTGCTTTGCTTTTATTTAGTTTATTTAAAAACACTAGCCTACTAGCTCAATTGGTAGAGACTAGAGCATTGTGCAAATGCACAAAAGACGTGGGGATCGAATCCTACGTAGGTTCGACTTTACTTTTTGTATTACTTTATTTACTTTTAATTGGAAAACCTTTAATTTTGGGTTTTTATTATTTACTTTTTAGATTTCACCCATCTCCTTCCCAATTACTTTCGTTTGTCTTAAATCCACTAAAATAAGATCACCTACTTTTCTTCAAAAGAAACGACTCAAATAGAAGCAGCAGCAAAATCACTTTTTTTTCTTTTTTCTTTTAGTACTTAGGGGTCGTGAGGAAGTGTAAGCAACATGAAGGCGAAGGCTAACCTGCTTTGGACCTTGTAGTACAATTCCTATTGAAGAGGTTCTTGAGTGGCTAATGCAGAAATGTGAGCTACTGTCGTTATTTTGTTGCCTGATTTTTGAGAACATGTAGGGTAGGCAAAAGCTCGGATTGTAGTAATGCCTGCAGTCTTGTTTTCAGACTGTTTAGGTGTTGTTTTTCAGGTGCTCTTACATTGTTCTGGTGCTAGACATATTTGACTCGGAGCTTCTATGCTTATTTATTGCGCTCATTTATCACTTCGCTGTTCACATATACTACTTTTGATATTTTCAAATTCACTTTTGAGCATTATTAATTTACTGTTGAGACACTTTGATTTACTTTCAAAATATTTATTTCTTTTATTTATTCTATATGAGCACACTAGCCTACTAGCTCAATTGGTAGAGCATTGTGAAAATGCACAAAGATGTGAGTTCAAATCTTACGTAGGTTCGTCTTTAATTTTTGCATTATTTTATTTACTTTTAAGTGGAAAACCTTTACTTTGACTCAGCAGTAACCAACCCAACATCAGTTCAGCAAGTTATGGGCCCAATTGGAGACTCTTCAGACGCAATATGACAACACAGTTCCTGCATCCTTCTAAGGCCAAGGAATTCTCCCATGCTCGGACTTGGGCTCTTGAAATCCTACTTAATCATCTAAGTGCTTCCAGTGGTCAAGATCATGCTGATGCTGTCAAGGTGATTGATCATTTTCGTTTTTCCATGTTCTGTTCGCTTGTGTTAAAGTTTTCGGGGATAAGTTGGATGAATCCCAGCTTAAAGAGATTGAAGCAATGCAGCACATCCAACTCACTTCCTTCGGATACTTTGCAATACTCAATCTATGGCCTTTCTTGA TCGCGCGCGTGGTTCACGCGCCATAAATATACCAACTTTTTTTCTCTATACTTTCATTCTATCCTGCGGAGACAACTACCATTTGTCCACCAGAAATCAAATCCACAGAGTTCCTCTGCTCAAAAACCAAAGAAAATCTGACGATGGAGGTGCGACGGTGGTGTGCGACTCTACATCGATCTTGTCGCCGATCTCTCTCCGTCCTTACACTCGCCGGCGATCTCTCCTCCCCAGACACCGGAGATTATAATTCGGAAGCAAAAGTGTTCTGCATTGATATAAGCCTAAATTATATCTATAGTTTGATAATTTACTTGTGGGAACATGAGGATCTGTTGATAGAATTTTATAGTCAAATCAGTAACCAACCCAACATCAGTTCAGCAAGTTATGGGCCCAATTGGAGACTCTTCAGACGCAATATGACAACACAGTTCCTGCATCCTTCTAAGGCCAAGGAATTCTCCCATGCTCGGACTTGGGCTCTTGAAATCCTACTTAATCATCTAAGTGCTTCCAGTGGTCAAGATCATGCTGATGCTGTCAAGGTGATTGATCATTTTCGTTTTTCCATGTTCTGTTCGCTTGTGTTAAAGTTTTCGGGGATAAGTTGGATGAATCCCAGCTTAAAGAGATTGAAGCAATGCAGCACATCCAACTCACTTCCTTCGGATACTTTGCAATACTCAATCTATGGCCTTTCTTGA ATGGAGGTGCGACGGTGGTGTGCGACTCTACATCGATCTTGTCGCCGATCTCTCTCCGTCCTTACACTCGCCGGCGATCTCTCCTCCCCAGACACCGGAGATTATAATTCGGAAGCAAAAGTGTTCTGCATTGATATAAGCCTAAATTATATCTATAGTTTGATAATTTACTTGTGGGAACATGAGGATCTGTTGATAGAATTTTATAGTCAAATCAGTAACCAACCCAACATCAGTTCAGCAAGTTATGGGCCCAATTGGAGACTCTTCAGACGCAATATGACAACACAGTTCCTGCATCCTTCTAAGGCCAAGGAATTCTCCCATGCTCGGACTTGGGCTCTTGAAATCCTACTTAATCATCTAAGTGCTTCCAGTGGTCAAGATCATGCTGATGCTGTCAAGGTGATTGATCATTTTCGTTTTTCCATGTTCTGTTCGCTTGTGTTAAAGTTTTCGGGGATAAGTTGGATGAATCCCAGCTTAAAGAGATTGAAGCAATGCAGCACATCCAACTCACTTCCTTCGGATACTTTGCAATACTCAATCTATGGCCTTTCTTGA MEVRRWCATLHRSCRRSLSVLTLAGDLSSPDTGDYNSEAKVFCIDISLNYIYSLIIYLWEHEDLLIEFYSQISNQPNISSASYGPNWRLFRRNMTTQFLHPSKAKEFSHARTWALEILLNHLSASSGQDHADAVKVIDHFRFSMFCSLVLKFSGISWMNPSLKRLKQCSTSNSLPSDTLQYSIYGLS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07959.1 vs. NCBI nr
Match: gi|902226910|gb|KNA20520.1| (hypothetical protein SOVF_051360 [Spinacia oleracea]) HSP 1 Score: 193.4 bits (490), Expect = 3.700e-46 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
BLAST of Spo07959.1 vs. NCBI nr
Match: gi|902217422|gb|KNA17697.1| (hypothetical protein SOVF_077600 [Spinacia oleracea]) HSP 1 Score: 147.9 bits (372), Expect = 1.800e-32 Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 1
BLAST of Spo07959.1 vs. NCBI nr
Match: gi|731338025|ref|XP_010680105.1| (PREDICTED: cytochrome P450 89A2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 129.4 bits (324), Expect = 6.500e-27 Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
BLAST of Spo07959.1 vs. NCBI nr
Match: gi|870856937|gb|KMT08513.1| (hypothetical protein BVRB_6g137960 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 111.7 bits (278), Expect = 1.400e-21 Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 1
BLAST of Spo07959.1 vs. NCBI nr
Match: gi|731339564|ref|XP_010680926.1| (PREDICTED: cytochrome P450 89A2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 111.3 bits (277), Expect = 1.800e-21 Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
BLAST of Spo07959.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLZ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051360 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.600e-46 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
BLAST of Spo07959.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077600 PE=3 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.200e-32 Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 1
BLAST of Spo07959.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C692_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g131850 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.500e-27 Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
BLAST of Spo07959.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C960_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137960 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 9.800e-22 Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 1
BLAST of Spo07959.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8G2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137970 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.300e-21 Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
BLAST of Spo07959.1 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2) HSP 1 Score: 80.1 bits (196), Expect = 2.800e-14 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
BLAST of Spo07959.1 vs. ExPASy Swiss-Prot
Match: C89A9_ARATH (Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 4.700e-9 Identity = 32/95 (33.68%), Postives = 53/95 (55.79%), Query Frame = 1
BLAST of Spo07959.1 vs. TAIR (Arabidopsis)
Match: AT2G12190.1 (Cytochrome P450 superfamily protein) HSP 1 Score: 87.0 bits (214), Expect = 1.300e-17 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
BLAST of Spo07959.1 vs. TAIR (Arabidopsis)
Match: AT1G64950.1 (cytochrome P450, family 89, subfamily A, polypeptide 5) HSP 1 Score: 85.5 bits (210), Expect = 3.800e-17 Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
BLAST of Spo07959.1 vs. TAIR (Arabidopsis)
Match: AT1G64940.1 (cytochrome P450, family 87, subfamily A, polypeptide 6) HSP 1 Score: 84.7 bits (208), Expect = 6.500e-17 Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
BLAST of Spo07959.1 vs. TAIR (Arabidopsis)
Match: AT1G64900.1 (cytochrome P450, family 89, subfamily A, polypeptide 2) HSP 1 Score: 80.1 bits (196), Expect = 1.600e-15 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
BLAST of Spo07959.1 vs. TAIR (Arabidopsis)
Match: AT5G61320.1 (cytochrome P450, family 89, subfamily A, polypeptide 3) HSP 1 Score: 75.5 bits (184), Expect = 3.900e-14 Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07959.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo07959.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo07959.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo07959.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|