Spo07141 (gene)

Overview
NameSpo07141
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCysteinyl-tRNA synthetase
Locationchr3 : 70140810 .. 70143037 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCTTCGTCCCTTTTTTAAAAACGAAAGCATACAAAAGGAAAGGGAGGCAAAAAAATCATAGATGCACTGGTCTTCGTGCATACATCGAGTACTCCCTCCGTCCCTTTTTTTTAAACCAAAGCATACAAAAGGAAAGGGACGCAAAAAAATCATAGCCTTAATTGTAAGCAATATGACCTTTTAATAAAATATATTTTAAGGAGTACTGTATTTTCTTACAAATTGAGAACTCTCAGTCCCTCCTCGGCTCTTACGCTGGTCAGACTATACATCATCCGAGACAAGGGAGAGTTAGGGTTTTGAGTTCGGAACTGTGCAACAATGGCAGAAGAAGAAAAATCGAAAACCTCTCCCTTTATGCTTTACAACTCCATGACAAAGCAGAAGGAAGTTTTTAAATCGAAGGTGAAGGGCGAGGTTAGCATGTATGTCTGTGGTGTCACTGCTTACGATTTCAGCCACATTGGCCACGCTCGTGCTTATGTCGCTTTCGATGTCCTCTACCGGTAATTTCTCCAATTTTTCTTTAATTTTGTAGATTTTTCTGTTGATTTTGATATTTCTGCGATTTTCGTGTTTTTGGTGTTAGATTGGGGTGAATTGAGAATTTTTTTCCGTTGACTTCGTTTCCATTTTCTGTTTTATTTTTTTATTTTTTATATATTGAGAATTGGATTTATTCGAGGGTCAAATCAATTTTTTATTTACTCAGTGGGAATGCTTTTATTTTTCATTTTCAAATTTGGTGATATAAGTTGTCTCTAGTACCAAGGGTGATTACTGAGAGTCGAATTCTGCAATTTGGAGCATTGCTGGAAAATAATTCATTTGGTATAAGTAATATTTGGTAATGAGATGTTATGTGTCATCGTATTTTCATTACCACATAGGTCTTATGTGTTAATGAAGATAAATGGTGCAAGACATATGCTTGGTGTGAATTTTGTAGGAATATTTGGCATGATACCTGGTGTTAAAAGAACAACCCTGATTATTCAAACCCACCAACTTGCCTCTATAAAGAACTTGTATTTACATGTTGTTAAGAACTTGAACTACTGCTTCAAATACTATAAGGATTCAGGAAGGATTGCTTGGGGAACTGTGATATCATGGGTATATTTGCTTATAGTCACCTGCAATACATCTAGTTACTTTCATGATCTTGCTGTGCAACAATAGGATGTGCATTTAAAGTGGACGATCAAAAATGTCCTTTGATGGTGTTGATACTATAAAGTTGGGGACCCCTTTGTTTTTTACCTTTTCATAGTGCCTTTTCTCCTTTCTTCGGTAGTGCGTAGTGGGAATACGGGATCTGTATTTAGTAACTATTCTGTTGTTTGTTGAATTTCGGTTTTAAAATGATAAATATATAGAATTTTAATATGATATATATCCATATGTTCATGCAGATACTTGATGGAATTGGGCTATAAAGTCACTTATGTTCGGAATTTCACTGATGTCGATGACAAGGTTAGAAAATGTTAGGTCTTTTATCTTTGATAGCTAGAAGGAGTTCTAAAAAACAGTAGTTGAAAAATATTTGCTTCATCTTTTTCAGCATTTTAATGAACTTTTGGTTGGGACTTTCACATAGACTCATACTTGGACGAATGTGATGCTATGTTTGCTAAACTAATTTTTGCATAAGAATTTTGTAGACTGCACCAATAATTAATGCATAATTGTAAGTCTCTCTTTATTTTATTGAAATGTAAGGTGAATTGGCTGAGGCAAATATTTCTGAGTTTAAATTTTTTAAGTTCTGCTTGGGTGCATAGTTGCATACAGAAGGCTTTAATTCTCAAGGAAAACATAAGTAAGGTACAAGTACAACTGATATTTGACTCTTTACTATTCTTAGGAGAGATCCTTCTAGTGCAGCTGCAGCCTGCAGGTATGTCAAATGGGTTTAGTCGAGTTGGTATTGGGTCAAATGATTTCAGGTTTGAGTTGGGCTTATTTTTGGGTCATGTTGAGCTTCTAGTGGGTTTTTTTGTATGTGTTACTGTGCGTGTGTGTGTGTGGTGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGAAGGGGGTTAGGCTGAAAAGTCAGGTTCCAGACTGAATTTTCATGTGTTGCATAAGGCAGANGGGAAGGGGGTTAGGCTGAAAAGTCAGGTTCCAGACTGAATTTTCATGTGTTGCATAAGGCAGAAAGATAGGACGTGTTGTCTGA

mRNA sequence

CTCCCTTCGTCCCTTTTTTAAAAACGAAAGCATACAAAAGGAAAGGGAGGCAAAAAAATCATAGATGCACTGGTCTTCGTGCATACATCGAGTACTCCCTCCGTCCCTTTTTTTTAAACCAAAGCATACAAAAGGAAAGGGACGCAAAAAAATCATAGCCTTAATTGTAAGCAATATGACCTTTTAATAAAATATATTTTAAGGAGTACTGTATTTTCTTACAAATTGAGAACTCTCAGTCCCTCCTCGGCTCTTACGCTGGTCAGACTATACATCATCCGAGACAAGGGAGAGTTAGGGTTTTGAGTTCGGAACTGTGCAACAATGGCAGAAGAAGAAAAATCGAAAACCTCTCCCTTTATGCTTTACAACTCCATGACAAAGCAGAAGGAAGTTTTTAAATCGAAGGTGAAGGGCGAGGTTAGCATGTATGTCTGTGGTGTCACTGCTTACGATTTCAGCCACATTGGCCACGCTCGTGCTTATGTCGCTTTCGATGTCCTCTACCGATACTTGATGGAATTGGGCTATAAAGTCACTTATGTTCGGAATTTCACTGATGTCGATGACAAGGTTAGAAAATGAGAGATCCTTCTAGTGCAGCTGCAGCCTGCAGGTATGTCAAATGGGTTTAGTCGAGTTGGTATTGGGTCAAATGATTTCAGAAAGATAGGACGTGTTGTCTGA

Coding sequence (CDS)

ATGGCAGAAGAAGAAAAATCGAAAACCTCTCCCTTTATGCTTTACAACTCCATGACAAAGCAGAAGGAAGTTTTTAAATCGAAGGTGAAGGGCGAGGTTAGCATGTATGTCTGTGGTGTCACTGCTTACGATTTCAGCCACATTGGCCACGCTCGTGCTTATGTCGCTTTCGATGTCCTCTACCGATACTTGATGGAATTGGGCTATAAAGTCACTTATGTTCGGAATTTCACTGATGTCGATGACAAGGTTAGAAAATGA

Protein sequence

MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTYVRNFTDVDDKVRK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07141.1Spo07141.1mRNA


Homology
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|902171700|gb|KNA08032.1| (hypothetical protein SOVF_166310 [Spinacia oleracea])

HSP 1 Score: 168.7 bits (426), Expect = 4.400e-39
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL
Sbjct: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKV 85
          YRYLMELGYKVTYVRNFTDVDDK+
Sbjct: 61 YRYLMELGYKVTYVRNFTDVDDKI 84
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|951027794|ref|XP_014514261.1| (PREDICTED: cysteine--tRNA ligase 2, cytoplasmic [Vigna radiata var. radiata])

HSP 1 Score: 129.0 bits (323), Expect = 3.900e-27
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEEE      F +YNSMT+QKE+FK+K  G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEE---LGGFRIYNSMTQQKEIFKTKTPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          YRYL  LGY+VTYVRNFTDVDDK+ K
Sbjct: 61 YRYLKHLGYEVTYVRNFTDVDDKIIK 83
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|720067918|ref|XP_010276942.1| (PREDICTED: cysteine--tRNA ligase, cytoplasmic [Nelumbo nucifera])

HSP 1 Score: 129.0 bits (323), Expect = 3.900e-27
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1 

		  

Query: 12 FMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKV 71
          F +YN+MTKQKEVFK K  G+V MYVCGVT+YDFSHIGHARAYVAFDVLYRYL  LGY+V
Sbjct: 5  FQIYNTMTKQKEVFKPKEPGKVGMYVCGVTSYDFSHIGHARAYVAFDVLYRYLRHLGYEV 64

Query: 72 TYVRNFTDVDDKV 85
          TYVRNFTDVDDK+
Sbjct: 65 TYVRNFTDVDDKI 77
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|1021028726|gb|KZM86511.1| (hypothetical protein DCAR_023645 [Daucus carota subsp. sativus])

HSP 1 Score: 127.9 bits (320), Expect = 8.700e-27
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE     +  ++YNS+TKQKEVFK +V G+V MYVCGVTAYD+SHIGHARAYVAFDVL
Sbjct: 1  MAEER----AELIVYNSLTKQKEVFKPRVPGKVGMYVCGVTAYDYSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY+VTYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEVTYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|571484891|ref|XP_006589683.1| (PREDICTED: cysteine--tRNA ligase 2, cytoplasmic [Glycine max])

HSP 1 Score: 127.9 bits (320), Expect = 8.700e-27
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE+      F +YNSMT+QKE+FK+KV G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEQ----GEFRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY++TYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEITYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166310 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.100e-39
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL
Sbjct: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKV 85
          YRYLMELGYKVTYVRNFTDVDDK+
Sbjct: 61 YRYLMELGYKVTYVRNFTDVDDKI 84
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: M0RY33_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 1 

		  

Query: 13 MLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVT 72
          +L+NSM+KQKEVFK++V+G+VSMYVCGVT YDFSHIGHARAYVAFDVLYRYL  LGY+V 
Sbjct: 7  VLFNSMSKQKEVFKTRVEGQVSMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKHLGYEVK 66

Query: 73 YVRNFTDVDDKVRK 87
          YVRNFTD+DDK+ K
Sbjct: 67 YVRNFTDIDDKIIK 80
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A164SR49_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023645 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE     +  ++YNS+TKQKEVFK +V G+V MYVCGVTAYD+SHIGHARAYVAFDVL
Sbjct: 1  MAEER----AELIVYNSLTKQKEVFKPRVPGKVGMYVCGVTAYDYSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY+VTYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEVTYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PD34_GLYSO (Cysteine--tRNA ligase OS=Glycine soja GN=glysoja_035752 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE+      F +YNSMT+QKE+FK+KV G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEQ----GEFRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY++TYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEITYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A0R0I6U8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G272400 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE+      F +YNSMT+QKE+FK+KV G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEQ----GEFRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY++TYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEITYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYCM_ARATH (Cysteine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYCO PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.200e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 14  LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
           L+N+M+++KE+FK KV+G+V MYVCGVTAYD SHIGHAR YV FDVL RYL  LGY+V+Y
Sbjct: 67  LHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGYEVSY 126

Query: 74  VRNFTDVDDKV 85
           VRNFTDVDDK+
Sbjct: 127 VRNFTDVDDKI 137
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYCC1_ARATH (Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana GN=At3g56300 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.000e-24
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          M+E E  K     LYN+MT+ KEV+K    G++ +YVCG+TAYD+SHIGHARA V+FD+L
Sbjct: 1  MSEMEVEKPD-LTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVR 86
          YRYL  LGY+VTYVRNFTDVDDK +
Sbjct: 61 YRYLRHLGYQVTYVRNFTDVDDKAK 84
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYCC2_ARATH (Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana GN=At5g38830 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.800e-23
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          LYN+MT+QKEV      G++ +YVCG+TAYDFSHIGHARA V+FDVLYRYL  L Y VT+
Sbjct: 10 LYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHLDYDVTF 69

Query: 74 VRNFTDVDDKV 85
          VRNFTDVDDK+
Sbjct: 70 VRNFTDVDDKI 80
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYC_DESMR (Cysteine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.200e-22
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          LYN+MT+ KE F S+V G+V+MYVCG+TAYD  HIGHAR+ V FDVL RYL  +G+ VT+
Sbjct: 3  LYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFDVTF 62

Query: 74 VRNFTDVDDKVRK 87
          VRNFTDVDDK+ K
Sbjct: 63 VRNFTDVDDKIIK 75
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYC_PSEHT (Cysteine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=cysS PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.400e-21
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          +YN++T+QKE FK  V+G++ MYVCG+T YD+ HIGHAR +V FDV+ RYL  +GY + Y
Sbjct: 4  IYNTLTRQKEQFKPMVEGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYDLKY 63

Query: 74 VRNFTDVDDKVRK 87
          VRN TDVDDK+ K
Sbjct: 64 VRNITDVDDKIIK 76
[Close]
BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Match: AT2G31170.1 (Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.500e-26
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 14  LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
           L+N+M+++KE+FK KV+G+V MYVCGVTAYD SHIGHAR YV FDVL RYL  LGY+V+Y
Sbjct: 67  LHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGYEVSY 126

Query: 74  VRNFTDVDDKV 85
           VRNFTDVDDK+
Sbjct: 127 VRNFTDVDDKI 137
[Close]
BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Match: AT3G56300.1 (Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 110.5 bits (275), Expect = 5.100e-25
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          M+E E  K     LYN+MT+ KEV+K    G++ +YVCG+TAYD+SHIGHARA V+FD+L
Sbjct: 1  MSEMEVEKPD-LTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVR 86
          YRYL  LGY+VTYVRNFTDVDDK +
Sbjct: 61 YRYLRHLGYQVTYVRNFTDVDDKAK 84
[Close]
BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Match: AT5G38830.1 (Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 107.8 bits (268), Expect = 3.300e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          LYN+MT+QKEV      G++ +YVCG+TAYDFSHIGHARA V+FDVLYRYL  L Y VT+
Sbjct: 10 LYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHLDYDVTF 69

Query: 74 VRNFTDVDDKV 85
          VRNFTDVDDK+
Sbjct: 70 VRNFTDVDDKI 80
The following BLAST results are available for this feature:
BLAST of Spo07141.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902171700|gb|KNA08032.1|4.4e-3998.8hypothetical protein SOVF_1663... [more]
gi|951027794|ref|XP_014514261.1|3.9e-2773.2PREDICTED: cysteine--tRNA liga... [more]
gi|720067918|ref|XP_010276942.1|3.9e-2782.1PREDICTED: cysteine--tRNA liga... [more]
gi|1021028726|gb|KZM86511.1|8.7e-2773.2hypothetical protein DCAR_0236... [more]
gi|571484891|ref|XP_006589683.1|8.7e-2770.9PREDICTED: cysteine--tRNA liga... [more]
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BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QLB6_SPIOL3.1e-3998.8Uncharacterized protein OS=Spi... [more]
M0RY33_MUSAM6.1e-2779.7Uncharacterized protein OS=Mus... [more]
A0A164SR49_DAUCA6.1e-2773.2Uncharacterized protein OS=Dau... [more]
A0A0B2PD34_GLYSO6.1e-2770.9Cysteine--tRNA ligase OS=Glyci... [more]
A0A0R0I6U8_SOYBN6.1e-2770.9Uncharacterized protein OS=Gly... [more]
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BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SYCM_ARATH6.2e-2573.2Cysteine--tRNA ligase, chlorop... [more]
SYCC1_ARATH9.0e-2463.5Cysteine--tRNA ligase 1, cytop... [more]
SYCC2_ARATH5.8e-2370.4Cysteine--tRNA ligase 2, cytop... [more]
SYC_DESMR2.2e-2267.1Cysteine--tRNA ligase OS=Desul... [more]
SYC_PSEHT1.4e-2160.2Cysteine--tRNA ligase OS=Pseud... [more]
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BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G31170.13.5e-2673.2Cysteinyl-tRNA synthetase, cla... [more]
AT3G56300.15.1e-2563.5Cysteinyl-tRNA synthetase, cla... [more]
AT5G38830.13.3e-2470.4Cysteinyl-tRNA synthetase, cla... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 30..85
score: 2.3
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePRINTSPR00983TRNASYNTHCYScoord: 35..46
score: 1.6E-5coord: 71..80
score: 1.
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePANTHERPTHR10890CYSTEINYL-TRNA SYNTHETASEcoord: 12..84
score: 1.6
NoneNo IPR availablePANTHERPTHR10890:SF10CYSTEINE-TRNA LIGASEcoord: 12..84
score: 1.6
NoneNo IPR availableunknownSSF52374Nucleotidylyl transferasecoord: 14..84
score: 2.22

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0009845 seed germination
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006468 protein phosphorylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0050826 response to freezing
biological_process GO:0001510 RNA methylation
biological_process GO:0006364 rRNA processing
biological_process GO:0010162 seed dormancy process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006423 cysteinyl-tRNA aminoacylation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0010106 cellular response to iron ion starvation
biological_process GO:0006826 iron ion transport
biological_process GO:0015706 nitrate transport
biological_process GO:0009408 response to heat
biological_process GO:0010167 response to nitrate
biological_process GO:0006979 response to oxidative stress
biological_process GO:0019915 lipid storage
biological_process GO:0006094 gluconeogenesis
biological_process GO:0048825 cotyledon development
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006260 DNA replication
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0006269 DNA replication, synthesis of RNA primer
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006457 protein folding
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0051301 cell division
biological_process GO:0009308 amine metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0008152 metabolic process
biological_process GO:0006306 DNA methylation
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0008283 cell proliferation
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0015976 carbon utilization
biological_process GO:0006270 DNA replication initiation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0051252 regulation of RNA metabolic process
cellular_component GO:0009360 DNA polymerase III complex
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005886 plasma membrane
cellular_component GO:0046809 replication compartment
cellular_component GO:0042555 MCM complex
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
cellular_component GO:0016459 myosin complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005777 peroxisome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030117 membrane coat
cellular_component GO:0032040 small-subunit processome
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005657 replication fork
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005730 nucleolus
molecular_function GO:0003896 DNA primase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0003688 DNA replication origin binding
molecular_function GO:0016174 NAD(P)H oxidase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004817 cysteine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity
molecular_function GO:0016905 myosin heavy chain kinase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0017056 structural constituent of nuclear pore
molecular_function GO:0003924 GTPase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0008859 exoribonuclease II activity
molecular_function GO:0017069 snRNA binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0003887 DNA-directed DNA polymerase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo059080.82Barchart | Table
Spo042190.76Barchart | Table
Spo209250.75Barchart | Table
Spo098330.74Barchart | Table
Spo063430.73Barchart | Table
Spo182440.73Barchart | Table
Spo042420.73Barchart | Table
Spo056010.73Barchart | Table
Spo057210.72Barchart | Table
Spo148710.72Barchart | Table
Spo243270.72Barchart | Table
Spo207780.71Barchart | Table
Spo058460.70Barchart | Table
Spo092340.70Barchart | Table
Spo070940.70Barchart | Table
Spo089520.70Barchart | Table
Spo058490.70Barchart | Table
Spo151320.70Barchart | Table
Spo199150.70Barchart | Table
Spo233450.69Barchart | Table
Spo138080.69Barchart | Table
Spo055890.69Barchart | Table
Spo185250.69Barchart | Table
Spo184490.69Barchart | Table
Spo098190.69Barchart | Table
Spo113140.69Barchart | Table
Spo116030.69Barchart | Table
Spo028380.68Barchart | Table
Spo025250.68Barchart | Table
Spo215950.68Barchart | Table
Spo180940.68Barchart | Table
Spo138560.68Barchart | Table
Spo099970.68Barchart | Table
Spo189860.68Barchart | Table
Spo032170.68Barchart | Table
Spo120480.68Barchart | Table
Spo000480.68Barchart | Table
Spo089050.68Barchart | Table
Spo282890.67Barchart | Table
Spo021450.67Barchart | Table
Spo049450.67Barchart | Table
Spo131790.67Barchart | Table
Spo134520.67Barchart | Table
Spo144150.67Barchart | Table
Spo223940.67Barchart | Table
Spo232410.67Barchart | Table
Spo248880.67Barchart | Table
Spo061360.66Barchart | Table
Spo224370.66Barchart | Table
Spo208460.66Barchart | Table
Spo021190.66Barchart | Table
Spo007640.66Barchart | Table
Spo157510.66Barchart | Table
Spo119430.66Barchart | Table
Spo087710.66Barchart | Table
Spo188420.66Barchart | Table
Spo077690.66Barchart | Table
Spo023800.66Barchart | Table
Spo096190.65Barchart | Table
Spo068630.65Barchart | Table
Spo198430.65Barchart | Table
Spo064510.65Barchart | Table
Spo054610.65Barchart | Table
Spo209700.65Barchart | Table
Spo004160.65Barchart | Table
Spo258270.65Barchart | Table