Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATGTGACTAAACTTGAGATGTATTTAAATGCTTCATGTCCCCCTTTTATCTCCCACCCTCACCTTCCAACTTCTTTCTTTTTGCTCTGCTCTAAACTCCCCCCCTCCCCCCCCTCTCTCTCATCTTTCTCTCTCTAAAAACCCAGAAACACAAGTACACAACAGCATCAGAAACTCAACAGACAACAAAAATGATGCACAAATTTCTCACCTCTACTCTCCTCATCGTTATCCTCCTCTGCCTCGTAGCATTTCCAACAACATCTGCTCGTCTACTAGTACACAAACCAGCAGATGACCAAAACCATCAAATTTCCAACGCGGTTCCGATACCAAAGTCACAAGATAAAGACTCCATAGATGTAAGCTTTAATTTGTTTTTTAATTTCACAGCTTTGAATCATATATTTCTATCTCTGAAAAAAACTGATGCATGTTGCTTTATTTGAATGAATTTCAGGAATTGATGGGATTGGAGATATGTGGGAATGGAGATGAAGAGTGCTTGAAGAGAAGACTGGTTTCAGAAGTTCACTTGGACTACATTTACACACAGCATCAAAACCCTTAAAATTAATAATAATAATACTTGTGATTTTATGGCTTTTAATTAACATATATAAATACTTTGATTAGAATAGAGATTAGTTTTGTGGAAATATTTAACCCCTGTTATACAAGGATGGTTATTTCAGAATTTTTAGAAAGAAGAGTTTTGGCATATTTTTCCTTGTGTTAATTCCCTTTGTCCGGAACTAATTAATGTATAATAATCTATTAATTAATGTATTTATCTGGAGTACGGAGTATAAGTATTACTCCCTCCGTCCCTTAATACTCGCACCTTTAATTACATATTATAAAAACTTGTAAAGATATTAATATTTTGAAAATATATATTAAGATGAAGCCAACAATATATTATATACTAACATTTATTTTCATATACTAGAAATAAATTAGGGTCAAAGTGAATTATGTGAATAGTGTAAAAAGTCAAAACGGTGCGAGTATTAAGGGACAGAGGGAGTATATCCATAGCCCCAAGGTAGGCAACAGGCTCTGAGCAGCCGCAGCGCACCCCTATACGCCGGCTATAGTGTTTTGGTTTTATTTTAGAATGAATATCTGGATCTGCTAATGTCTACATCCTTTGTTTTTCCCTTAATCAATACTCCCTATTTCACAATTAACACACATGAAAAAAATTAAAAAGTAGGAGCGTTGTTAAGCAAGCATTAATCCTCATGCATATTAGATAAACCCGGGCCCAAGAGGAGAAGGAAAAGACAAAAAAGAGGATGAATTTAACCTCAAGGATGACGGAGTATTTTGTTACTCCCTCCGTCCCTTAATACTCGCACCGCTTTCCTTTTCGGATCGTCCTTTAATACTTGCACCGCTTCTATAAATGGAAATTTATACCAATATTATATTATTTCTCACACTTACTTACTAACCCCACCTACATCCCTATTCCCTACAAAAAATCATTTAAAGATTCACACACTCACTCACCACTCTCCACCTCTTACACATTTTCCACTAACTATATTAAAAATACTCCACTATCAACTAACACCC CATGTGACTAAACTTGAGATGTATTTAAATGCTTCATGTCCCCCTTTTATCTCCCACCCTCACCTTCCAACTTCTTTCTTTTTGCTCTGCTCTAAACTCCCCCCCTCCCCCCCCTCTCTCTCATCTTTCTCTCTCTAAAAACCCAGAAACACAAGTACACAACAGCATCAGAAACTCAACAGACAACAAAAATGATGCACAAATTTCTCACCTCTACTCTCCTCATCGTTATCCTCCTCTGCCTCGTAGCATTTCCAACAACATCTGCTCGTCTACTAGTACACAAACCAGCAGATGACCAAAACCATCAAATTTCCAACGCGGTTCCGATACCAAAGTCACAAGATAAAGACTCCATAGATGAATTGATGGGATTGGAGATATGTGGGAATGGAGATGAAGAGTGCTTGAAGAGAAGACTGGTTTCAGAAGTTCACTTGGACTACATTTACACACAGCATCAAAACCCTTAAAATTAATAATAATAATACTTGTGATTTTATGGCTTTTAATTAACATATATAAATACTTTGATTAGAATAGAGATTAGTTTTGTGGAAATATTTAACCCCTGTTATACAAGGATGGTTATTTCAGAATTTTTAGAAAGAAGAGTTTTGGCATATTTTTCCTTGTGTTAATTCCCTTTGTCCGGAACTAATTAATGTATAATAATCTATTAATTAATGTATTTATCTGGAGTACGGAGTATAAGTATTACTCCCTCCGTCCCTTAATACTCGCACCTTTAATTACATATTATAAAAACTTGTAAAGATATTAATATTTTGAAAATATATATTAAGATGAAGCCAACAATATATTATATACTAACATTTATTTTCATATACTAGAAATAAATTAGGGTCAAAGTGAATTATGTGAATAGTGTAAAAAGTCAAAACGGTGCGAGTATTAAGGGACAGAGGGAGTATATCCATAGCCCCAAGGTAGGCAACAGGCTCTGAGCAGCCGCAGCGCACCCCTATACGCCGGCTATAGTGTTTTGGTTTTATTTTAGAATGAATATCTGGATCTGCTAATGTCTACATCCTTTGTTTTTCCCTTAATCAATACTCCCTATTTCACAATTAACACACATGAAAAAAATTAAAAAGTAGGAGCGTTGTTAAGCAAGCATTAATCCTCATGCATATTAGATAAACCCGGGCCCAAGAGGAGAAGGAAAAGACAAAAAAGAGGATGAATTTAACCTCAAGGATGACGGAGTATTTTGTTACTCCCTCCGTCCCTTAATACTCGCACCGCTTTCCTTTTCGGATCGTCCTTTAATACTTGCACCGCTTCTATAAATGGAAATTTATACCAATATTATATTATTTCTCACACTTACTTACTAACCCCACCTACATCCCTATTCCCTACAAAAAATCATTTAAAGATTCACACACTCACTCACCACTCTCCACCTCTTACACATTTTCCACTAACTATATTAAAAATACTCCACTATCAACTAACACCC ATGATGCACAAATTTCTCACCTCTACTCTCCTCATCGTTATCCTCCTCTGCCTCGTAGCATTTCCAACAACATCTGCTCGTCTACTAGTACACAAACCAGCAGATGACCAAAACCATCAAATTTCCAACGCGGTTCCGATACCAAAGTCACAAGATAAAGACTCCATAGATGAATTGATGGGATTGGAGATATGTGGGAATGGAGATGAAGAGTGCTTGAAGAGAAGACTGGTTTCAGAAGTTCACTTGGACTACATTTACACACAGCATCAAAACCCTTAA MMHKFLTSTLLIVILLCLVAFPTTSARLLVHKPADDQNHQISNAVPIPKSQDKDSIDELMGLEICGNGDEECLKRRLVSEVHLDYIYTQHQNP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07070.1 vs. NCBI nr
Match: gi|902180940|gb|KNA09643.1| (hypothetical protein SOVF_151690 [Spinacia oleracea]) HSP 1 Score: 187.6 bits (475), Expect = 1.000e-44 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Spo07070.1 vs. NCBI nr
Match: gi|225436341|ref|XP_002268902.1| (PREDICTED: putative phytosulfokines 6 isoform X1 [Vitis vinifera]) HSP 1 Score: 80.9 bits (198), Expect = 1.300e-12 Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 1
BLAST of Spo07070.1 vs. NCBI nr
Match: gi|731394130|ref|XP_010651731.1| (PREDICTED: putative phytosulfokines 6 isoform X2 [Vitis vinifera]) HSP 1 Score: 76.6 bits (187), Expect = 2.500e-11 Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
BLAST of Spo07070.1 vs. NCBI nr
Match: gi|567880849|ref|XP_006432983.1| (hypothetical protein CICLE_v10003706mg, partial [Citrus clementina]) HSP 1 Score: 76.3 bits (186), Expect = 3.200e-11 Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
BLAST of Spo07070.1 vs. NCBI nr
Match: gi|568835725|ref|XP_006471911.1| (PREDICTED: putative phytosulfokines 6 isoform X1 [Citrus sinensis]) HSP 1 Score: 76.3 bits (186), Expect = 3.200e-11 Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
BLAST of Spo07070.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSJ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_151690 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 7.000e-45 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Spo07070.1 vs. UniProtKB/TrEMBL
Match: D7SN54_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01290 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 9.200e-13 Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 1
BLAST of Spo07070.1 vs. UniProtKB/TrEMBL
Match: V4SF16_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003706mg PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.300e-11 Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
BLAST of Spo07070.1 vs. UniProtKB/TrEMBL
Match: A0A061GVN1_THECC (Phytosulfokine 3, putative isoform 1 OS=Theobroma cacao GN=TCM_041507 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.100e-10 Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
BLAST of Spo07070.1 vs. UniProtKB/TrEMBL
Match: A0A067DR11_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048531mg PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.500e-10 Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1
BLAST of Spo07070.1 vs. ExPASy Swiss-Prot
Match: PSK6_ARATH (Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2 SV=2) HSP 1 Score: 66.6 bits (161), Expect = 1.600e-10 Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
BLAST of Spo07070.1 vs. ExPASy Swiss-Prot
Match: PSK2_ORYSI (Phytosulfokines 2 OS=Oryza sativa subsp. indica GN=PSK2 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 5.400e-6 Identity = 32/100 (32.00%), Postives = 50/100 (50.00%), Query Frame = 1
BLAST of Spo07070.1 vs. TAIR (Arabidopsis)
Match: AT3G44735.1 (PHYTOSULFOKINE 3 PRECURSOR) HSP 1 Score: 66.6 bits (161), Expect = 9.100e-12 Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07070.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo07070.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo07070.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo07070.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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