Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGATGAAAATTTATCCCACCTTGTCGGGTAGGCGGGTCAAATTTCGTGCCAATTTGTGTGCCAAGATCCGTTATTTCGGATCAAACTAAAGGCTTTTCAGGGTAATTTTATAACTGAAATTCCTGTTTTGAGTTGCCAAAAACTGAAAATATTAGATGCACCGTGCAATCAAGAGTATTTTTTCGGGTGCATTTAATATGCTCTAGCCAAAAACCCGTCCCAAAATATTAAAATCGGGCCTAAATATTCTGTTCCAAAATCTCATTTTTTGGGTCAGGCCAACGGGCCGGGCTTAACATGATCAGGTCTAGCTACCACTATATAAATACCCAACATGCACCTTGTAACATTTCATCTCATCCTAGGCATTTCTATACAAATCTTACATCTTTTTTCATATTTCTATTTAGTTAACAAAATGAGTTCAATTATTGGTAGCAATGAATCACAAATCCATCCAACTACTGAAGAAGAAGCCTCATGTATGGCAATGTGCTTGGCTACATGGTCAGTTCCCTCAATGGTTTTCAAAACCGTGTTAGAATTGAACGTCCTTGACATCATTTACTTCACCGGGCCCGAGGCCCAGCTCTCCGCGGAGGAGATCGTGGCCAAATTACCCGCCACGAACCCCCACGCCGCGGTGGTGTTGGACCGTATGCTCCGCCTCTTGGCTAGCTTTACTATCCTCACTTGTACTCAACAAGTTGGAGATGATGGTCAGCCTAAGAGGTTATATGGGCTTGGTCCGGTTTGCCAGTTTTTGGCTAAGAATGATGATGAGGTTTCTTACGCTGCCTTTGCTAATCTTATGCATGATAAGGTTATTATGGACACTTGGTGAGTTTAACTTGATCGTCTTTCTTTTCGTAGGCTATTAGTCCTTATTCTCTTCACCTGATTTGGTATGATTTTTCTAGTTTCTGGTCTAGTCTGGTCTGATATAGTTTGGAATAAATGTTTATGTGAATGCCTTTTGTTTTTTCTAGCCTGGTTTGATGTGGTCTGGTATAGTTTGGAATAGATGTTTATGTGAATGCCTTTTGTTTTTTCTTGCCCGGTCTATTCTGATCTGGTCTTTCTGGGTTTACTAATAAGCAATAAGCATAAGATGAGGAGAGCAAATCCTAACTGGTGAACCCATTTTGTCTGAAATAAGTTAAAAGTAAGACAATTTTATGGGAACTACCTTTTATAACACTTATTTTAGAAGAAGAAAAAATCATTACCTTTGGAAAAACTACCTATTCTTCTTTTTTTGTTAGTAGCACTGCCACTCCATGTTATTGTTTAATTTACCCCCAAACAAAGATAATTAGAGAACCCAAAGTAAGTCATTAGTATAGCCACATTGTATTTGTAAATCAAAGTTTGTAATTCGAAGAAAATTGCTTATATTTGGGGCTAATTACCTTTAATTGGTGTATAATTATTGATAGTTGGAGGTAGATCGTTACCCGTGAGCGCCTTGGACAGAATTTTGAATGGAAAATGTTAAATGGTACTAAAAAAATGCTAATACTTATAAAATCAGTGTTATAAAATGTACTTCCTCACATAATTTTCTTAATGTCCGAGGTATTATTTTCTCACTATAAGAATTTAAATTTTTAATAACAATCTAATAACGACGGGTTAAAAATTTCGTCGCAAAATCTTTTTGAGACGGGGATAACAACCAAACAAAGACGGGAACAACCGTCTCAAATGTGTTTTACGACGGGTTAACGTCGAGATTTTCCATTAATGACGGTCCCTTTCTATGACGGGTGCGCGATAAGAAATCTCATCGTTAATCAACGATTATTGGCTTTTAGCGACGAGATTTTCCATCATTAACAGTATAATTTCTTGTAGTGTACGTAATTACTTTTATGTTATCATAATGTCACATAAATGTTTTAATATCTGAGGTATTGTTTTCTAACTTATATTTGAGATATTTTAATTTGAAGGAAACATTTGAAAGAAGCAGTGCTAGTAGGTGGAAGTGCATTTAGAAATTCAAATGGTACGAGCTTTTTTGACTATCTTGGAACAGATTCAAGATTCTATAAGGTTTTCTATGAGGGGATGGATCATCACTCTACCATTGTTATGAAGAAACTTCTAGATACTTACCAAGGATTTAAGGGTATTTCGACAATTATTGATGTTGGTGGTGCGACTGGTCTCACACTTAAGATGATTCTGGATAAATATCCTTCAATTAAGGCCATCAATTTTGATCTGCCCCATATTATTAAGGATGCACCCTCTTATCCAGGTAATTATTTAAGAACTTAATATTCCCTGTTTAATCATTAATACTTTCTCCATTACACCATTTTAACTTTTACGTTTACCCATACATAATTTTGACAATCAATACCAATATTTAGAAAAATCACTACAAAAAATTGTACCATTAATGACGGGAAATTCCGTCGCTAAAAGCCAATAATCGTTGATTAATGACGAGATTTTCTGTCGCGAACCCGTCATAAAAGAGGGTCGTCGTTAATGGAAAATTTCGTCGTTAACCCGTCGTAAAAGACATTTGCGACGGTTGTTCCCGTCTTTGTTTGGTTGTTAGCCCCGTCGAAAAAAGACTTTTGCGACGGGATATTTGACCCGTTGTAATTAGATTGTCGTTAAAGATACAAACTCTTGTAGTGAATATATATTGACACAAACTGGATACAGAGTACCCCACACATTTTACATAATATTTCTTTTTACTTTACGAAGTATTAGCAAAAAAATATGGTCAAAGTAAGATAAATAAAAGTCAAAATTGTGCAACTATTTAGAAACGGAGGTAATAATATTAATTTCGATTCAAAAAAAAGTTTAAAAAAGTGAAGGGGAAGGATGAAGGGGGAGGGGGTAATTTTCTTTAAAAGCGTAAAATCGTCATTTTGCCACATATACAAGGGTGTTTTTAGTGATTGAAAACGTCGAATAGCGATACACTATGTACTTCGTATTAAAAAAGATCTACTCACGCGTATTCTTGATAATTAATTATTTCTACGTATTTTTAGGTGTGGAGCACGTTGGAGGGGACATGTACGACAGTGTTCCTAAGGGTGATGCTATATTTATGAAGGTGAGTTTTAATTTCGATTGTGATGCCAACTTGCCAATGTGGATCGAGTAAAATTAATTAAGTAGTCATATAATATTAAATGATACCAATTCTTTGTTGGTTCAGTGGTGATTGGGGATGAACATGTTAGGGAGAACCCGTGTTTGATCCCCTGCAATAATAATTGGGAGGGGATTGAAATCTATCCACCCAAAACTCGCCCCAAATCCGTATTAGCCCAAAGGGTGAACCAGGTGCTAACACCAAAAAAACAACGGTTTTTTCATGAAATGCCCCTGAGGTTTCTCGAAATTCACCAAATACCCCTGCGTGTTTCAAAATACATAATATACCCCTATTGAAACTTAACGTGCACCAAATACCCTTTGATTTAACGGCCGTTAGTACTCCGTTAGCGTTAATTTACGTT GGATGAAAATTTATCCCACCTTGTCGGGTAGGCGGGTCAAATTTCGTGCCAATTTGTGTGCCAAGATCCGTTATTTCGGATCAAACTAAAGGCTTTTCAGGGTAATTTTATAACTGAAATTCCTGTTTTGAGTTGCCAAAAACTGAAAATATTAGATGCACCGTGCAATCAAGAGTATTTTTTCGGGTGCATTTAATATGCTCTAGCCAAAAACCCGTCCCAAAATATTAAAATCGGGCCTAAATATTCTGTTCCAAAATCTCATTTTTTGGGTCAGGCCAACGGGCCGGGCTTAACATGATCAGGTCTAGCTACCACTATATAAATACCCAACATGCACCTTGTAACATTTCATCTCATCCTAGGCATTTCTATACAAATCTTACATCTTTTTTCATATTTCTATTTAGTTAACAAAATGAGTTCAATTATTGGTAGCAATGAATCACAAATCCATCCAACTACTGAAGAAGAAGCCTCATGTATGGCAATGTGCTTGGCTACATGGTCAGTTCCCTCAATGGTTTTCAAAACCGTGTTAGAATTGAACGTCCTTGACATCATTTACTTCACCGGGCCCGAGGCCCAGCTCTCCGCGGAGGAGATCGTGGCCAAATTACCCGCCACGAACCCCCACGCCGCGGTGGTGTTGGACCGTATGCTCCGCCTCTTGGCTAGCTTTACTATCCTCACTTGTACTCAACAAGTTGGAGATGATGGTCAGCCTAAGAGGTTATATGGGCTTGGTCCGGTTTGCCAGTTTTTGGCTAAGAATGATGATGAGGTTTCTTACGCTGCCTTTGCTAATCTTATGCATGATAAGGTTATTATGGACACTTGGAAACATTTGAAAGAAGCAGTGCTAGTAGGTGGAAGTGCATTTAGAAATTCAAATGGTACGAGCTTTTTTGACTATCTTGGAACAGATTCAAGATTCTATAAGGTTTTCTATGAGGGGATGGATCATCACTCTACCATTGTTATGAAGAAACTTCTAGATACTTACCAAGGATTTAAGGGTATTTCGACAATTATTGATGTTGGTGGTGCGACTGGTCTCACACTTAAGATGATTCTGGATAAATATCCTTCAATTAAGGCCATCAATTTTGATCTGCCCCATATTATTAAGGATGCACCCTCTTATCCAGGTGTGGAGCACGTTGGAGGGGACATGTACGACAGTGTTCCTAAGGGTGATGCTATATTTATGAAGGTGAGTTTTAATTTCGATTGTGATGCCAACTTGCCAATGTGGATCGAGTAAAATTAATTAAGTAGTCATATAATATTAAATGATACCAATTCTTTGTTGGTTCAGTGGTGATTGGGGATGAACATGTTAGGGAGAACCCGTGTTTGATCCCCTGCAATAATAATTGGGAGGGGATTGAAATCTATCCACCCAAAACTCGCCCCAAATCCGTATTAGCCCAAAGGGTGAACCAGGTGCTAACACCAAAAAAACAACGGTTTTTTCATGAAATGCCCCTGAGGTTTCTCGAAATTCACCAAATACCCCTGCGTGTTTCAAAATACATAATATACCCCTATTGAAACTTAACGTGCACCAAATACCCTTTGATTTAACGGCCGTTAGTACTCCGTTAGCGTTAATTTACGTT ATGCACCTTGTAACATTTCATCTCATCCTAGGCATTTCTATACAAATCTTACATCTTTTTTCATATTTCTATTTAGTTAACAAAATGAGTTCAATTATTGGTAGCAATGAATCACAAATCCATCCAACTACTGAAGAAGAAGCCTCATGTATGGCAATGTGCTTGGCTACATGGTCAGTTCCCTCAATGGTTTTCAAAACCGTGTTAGAATTGAACGTCCTTGACATCATTTACTTCACCGGGCCCGAGGCCCAGCTCTCCGCGGAGGAGATCGTGGCCAAATTACCCGCCACGAACCCCCACGCCGCGGTGGTGTTGGACCGTATGCTCCGCCTCTTGGCTAGCTTTACTATCCTCACTTGTACTCAACAAGTTGGAGATGATGGTCAGCCTAAGAGGTTATATGGGCTTGGTCCGGTTTGCCAGTTTTTGGCTAAGAATGATGATGAGGTTTCTTACGCTGCCTTTGCTAATCTTATGCATGATAAGGTTATTATGGACACTTGGAAACATTTGAAAGAAGCAGTGCTAGTAGGTGGAAGTGCATTTAGAAATTCAAATGGTACGAGCTTTTTTGACTATCTTGGAACAGATTCAAGATTCTATAAGGTTTTCTATGAGGGGATGGATCATCACTCTACCATTGTTATGAAGAAACTTCTAGATACTTACCAAGGATTTAAGGGTATTTCGACAATTATTGATGTTGGTGGTGCGACTGGTCTCACACTTAAGATGATTCTGGATAAATATCCTTCAATTAAGGCCATCAATTTTGATCTGCCCCATATTATTAAGGATGCACCCTCTTATCCAGGTGTGGAGCACGTTGGAGGGGACATGTACGACAGTGTTCCTAAGGGTGATGCTATATTTATGAAGGTGAGTTTTAATTTCGATTGTGATGCCAACTTGCCAATGTGGATCGAGTAA MHLVTFHLILGISIQILHLFSYFYLVNKMSSIIGSNESQIHPTTEEEASCMAMCLATWSVPSMVFKTVLELNVLDIIYFTGPEAQLSAEEIVAKLPATNPHAAVVLDRMLRLLASFTILTCTQQVGDDGQPKRLYGLGPVCQFLAKNDDEVSYAAFANLMHDKVIMDTWKHLKEAVLVGGSAFRNSNGTSFFDYLGTDSRFYKVFYEGMDHHSTIVMKKLLDTYQGFKGISTIIDVGGATGLTLKMILDKYPSIKAINFDLPHIIKDAPSYPGVEHVGGDMYDSVPKGDAIFMKVSFNFDCDANLPMWIE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06959.1 vs. NCBI nr
Match: gi|902171790|gb|KNA08046.1| (hypothetical protein SOVF_166240 [Spinacia oleracea]) HSP 1 Score: 543.1 bits (1398), Expect = 3.100e-151 Identity = 268/274 (97.81%), Postives = 269/274 (98.18%), Query Frame = 1
BLAST of Spo06959.1 vs. NCBI nr
Match: gi|902149706|gb|KNA05341.1| (hypothetical protein SOVF_191240 [Spinacia oleracea]) HSP 1 Score: 478.8 bits (1231), Expect = 7.200e-132 Identity = 229/271 (84.50%), Postives = 251/271 (92.62%), Query Frame = 1
BLAST of Spo06959.1 vs. NCBI nr
Match: gi|731322420|ref|XP_010671879.1| (PREDICTED: caffeic acid 3-O-methyltransferase-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 454.1 bits (1167), Expect = 1.900e-124 Identity = 222/274 (81.02%), Postives = 241/274 (87.96%), Query Frame = 1
BLAST of Spo06959.1 vs. NCBI nr
Match: gi|731321402|ref|XP_010671332.1| (PREDICTED: caffeic acid 3-O-methyltransferase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 317.4 bits (812), Expect = 2.800e-83 Identity = 159/285 (55.79%), Postives = 206/285 (72.28%), Query Frame = 1
BLAST of Spo06959.1 vs. NCBI nr
Match: gi|720077470|ref|XP_010241050.1| (PREDICTED: caffeic acid 3-O-methyltransferase 1 [Nelumbo nucifera]) HSP 1 Score: 314.7 bits (805), Expect = 1.800e-82 Identity = 158/264 (59.85%), Postives = 196/264 (74.24%), Query Frame = 1
BLAST of Spo06959.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN72_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166240 PE=3 SV=1) HSP 1 Score: 543.1 bits (1398), Expect = 2.200e-151 Identity = 268/274 (97.81%), Postives = 269/274 (98.18%), Query Frame = 1
BLAST of Spo06959.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFL0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_191240 PE=3 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 5.000e-132 Identity = 229/271 (84.50%), Postives = 251/271 (92.62%), Query Frame = 1
BLAST of Spo06959.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWQ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g055430 PE=3 SV=1) HSP 1 Score: 454.1 bits (1167), Expect = 1.300e-124 Identity = 222/274 (81.02%), Postives = 241/274 (87.96%), Query Frame = 1
BLAST of Spo06959.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050950 PE=3 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.900e-83 Identity = 159/285 (55.79%), Postives = 206/285 (72.28%), Query Frame = 1
BLAST of Spo06959.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAX5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093740 PE=3 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 2.800e-82 Identity = 159/285 (55.79%), Postives = 205/285 (71.93%), Query Frame = 1
BLAST of Spo06959.1 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 5.300e-82 Identity = 151/262 (57.63%), Postives = 199/262 (75.95%), Query Frame = 1
BLAST of Spo06959.1 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 1.200e-81 Identity = 149/253 (58.89%), Postives = 193/253 (76.28%), Query Frame = 1
BLAST of Spo06959.1 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.300e-80 Identity = 149/262 (56.87%), Postives = 196/262 (74.81%), Query Frame = 1
BLAST of Spo06959.1 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 2.900e-80 Identity = 147/262 (56.11%), Postives = 195/262 (74.43%), Query Frame = 1
BLAST of Spo06959.1 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 3.800e-80 Identity = 147/261 (56.32%), Postives = 195/261 (74.71%), Query Frame = 1
BLAST of Spo06959.1 vs. TAIR (Arabidopsis)
Match: AT5G54160.1 (O-methyltransferase 1) HSP 1 Score: 293.5 bits (750), Expect = 1.500e-79 Identity = 143/260 (55.00%), Postives = 195/260 (75.00%), Query Frame = 1
BLAST of Spo06959.1 vs. TAIR (Arabidopsis)
Match: AT1G77530.1 (O-methyltransferase family protein) HSP 1 Score: 216.1 bits (549), Expect = 3.100e-56 Identity = 108/239 (45.19%), Postives = 153/239 (64.02%), Query Frame = 1
BLAST of Spo06959.1 vs. TAIR (Arabidopsis)
Match: AT1G77520.1 (O-methyltransferase family protein) HSP 1 Score: 212.2 bits (539), Expect = 4.500e-55 Identity = 111/257 (43.19%), Postives = 152/257 (59.14%), Query Frame = 1
BLAST of Spo06959.1 vs. TAIR (Arabidopsis)
Match: AT1G21130.1 (O-methyltransferase family protein) HSP 1 Score: 210.3 bits (534), Expect = 1.700e-54 Identity = 117/257 (45.53%), Postives = 159/257 (61.87%), Query Frame = 1
BLAST of Spo06959.1 vs. TAIR (Arabidopsis)
Match: AT1G21120.1 (O-methyltransferase family protein) HSP 1 Score: 208.0 bits (528), Expect = 8.400e-54 Identity = 118/257 (45.91%), Postives = 157/257 (61.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06959.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06959.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06959.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo06959.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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