Spo06816 (gene)

Overview
NameSpo06816
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 36529718 .. 36530685 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGACATGCTAAGGTAGCTACCATCATACCCTGTTAACTTGTTACAGACTACTACCGAGTTTGGGTAATTTTAGTTTCTGTTAGTAATCTTCCTGTTACTTAGAATAGCATAATCTGTTACCTATAAATATATATATGCCATGTGGTTTTTACCACAGAGCCTTAGTCAAATTGTTGCTCAGTTAATTAGATTAGTTAGCGGGTTATTCCTTCTTATGAAATTCCCCTTGATGATGCTAAGCAGTCAAGTACTTTAGTGTCTTCCATTTCACTTTGCATACTTGGTGCTGCTTCTGTTGGTTGAAAACTTTGAAGTTCTTTATTGATCCTTTGTGCTAGGCTTGCTGTAAACTAGCAATAACAACAAATTTATTGGACTTTGAATGTTAGTGTTCCTAAAGAAACTTTATCTGTTATCTTTTCAGGTCGGCATGTTGTGTCCAGAGAAATGGGAGGTCAATACTGTTTCTGAAGACGGGAAATACAATTTTGTTTTCACGTAACTCATCAAGGGGGCGGCGGTGCCCTGTGGAGTTAACATTGCCGAACTATATAGTTGAGGCACCAATAATCCGTCCTATATTAAAAATGAACCCGTTTTGTCACCTTAATGGTTCAACGGGTAGAAGCACATGTGCATTTTGTTGAGTTGAAGCCATATGATTGTAAGAAATGCAGACATGGTAGATGGAAGTGTTTATGGATGCCTAATAATTTACCTATCCATTGTGAATATTTTAGGAATGAATATGTTTAATGTTTCATTTGATGTAAGTTTTAATGTCATCAAGCAGTGTACTTTCTCACTCTGATGTACTTTCTAGTCTTATTAATAATCCAACTTTGAGAAGTCATGACATGATGAAATGAATCGTAGTCTTTGTTTGTCAGGTGAAGTTGAGATCTCCCGGCTTGCACCAATGATTGATATATTTGTAGTAGTTAACGGTCGTATTAGCAAAAC

mRNA sequence

ATGATGGACATGCTAAGGTCGGCATGTTGTGTCCAGAGAAATGGGAGGTCAATACTGTTTCTGAAGACGGGAAATACAATTTTGTTTTCACGTAACTCATCAAGGGGGCGGCGGTGCCCTGTGGAGTTAACATTGCCGAACTATATAGTTGAGGCACCAATAATCCGTCCTATATTAAAAATGAACCCGTTTTGTCACCTTAATGGTTCAACGGGTAGAAGCACATGTGCATTTTGTTGAGTTGAAGCCATATGATTGTAAGAAATGCAGACATGGTAGATGGAAGTGTTTATGGATGCCTAATAATTTACCTATCCATTGTGAATATTTTAGGAATGAATATGTTTAATGTTTCATTTGATGTAAGTTTTAATGTCATCAAGCAGTGTACTTTCTCACTCTGATGTACTTTCTAGTCTTATTAATAATCCAACTTTGAGAAGTCATGACATGATGAAATGAATCGTAGTCTTTGTTTGTCAGGTGAAGTTGAGATCTCCCGGCTTGCACCAATGATTGATATATTTGTAGTAGTTAACGGTCGTATTAGCAAAAC

Coding sequence (CDS)

ATGATGGACATGCTAAGGTCGGCATGTTGTGTCCAGAGAAATGGGAGGTCAATACTGTTTCTGAAGACGGGAAATACAATTTTGTTTTCACGTAACTCATCAAGGGGGCGGCGGTGCCCTGTGGAGTTAACATTGCCGAACTATATAGTTGAGGCACCAATAATCCGTCCTATATTAAAAATGAACCCGTTTTGTCACCTTAATGGTTCAACGGGTAGAAGCACATGTGCATTTTGTTGA

Protein sequence

MMDMLRSACCVQRNGRSILFLKTGNTILFSRNSSRGRRCPVELTLPNYIVEAPIIRPILKMNPFCHLNGSTGRSTCAFC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06816.1Spo06816.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo06816.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06816.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06816.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06816.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0044070 regulation of anion transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
biological_process GO:0008152 metabolic process
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0006909 phagocytosis
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006325 chromatin organization
biological_process GO:0006897 endocytosis
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0032259 methylation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0016310 phosphorylation
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006544 glycine metabolic process
biological_process GO:0007165 signal transduction
biological_process GO:0051301 cell division
biological_process GO:0009790 embryo development
biological_process GO:0009637 response to blue light
biological_process GO:0009909 regulation of flower development
biological_process GO:0006281 DNA repair
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0009507 chloroplast
cellular_component GO:0009524 phragmoplast
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0009881 photoreceptor activity
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0003913 DNA photolyase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004072 aspartate kinase activity
molecular_function GO:0016597 amino acid binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo237510.79Barchart | Table
Spo213510.77Barchart | Table
Spo082720.75Barchart | Table
Spo085460.75Barchart | Table
Spo019290.75Barchart | Table
Spo107750.75Barchart | Table
Spo190890.74Barchart | Table
Spo144380.74Barchart | Table
Spo236640.73Barchart | Table
Spo148560.73Barchart | Table
Spo068150.73Barchart | Table
Spo247520.73Barchart | Table
Spo262660.73Barchart | Table
Spo121620.73Barchart | Table
Spo112960.73Barchart | Table
Spo246070.72Barchart | Table
Spo217840.71Barchart | Table
Spo137060.71Barchart | Table
Spo021750.71Barchart | Table
Spo037160.71Barchart | Table
Spo049230.71Barchart | Table
Spo051270.71Barchart | Table
Spo156960.71Barchart | Table
Spo005700.71Barchart | Table
Spo104270.71Barchart | Table
Spo188930.71Barchart | Table
Spo113390.71Barchart | Table
Spo036080.70Barchart | Table
Spo021070.70Barchart | Table
Spo130310.70Barchart | Table
Spo153540.70Barchart | Table
Spo236110.70Barchart | Table
Spo101560.70Barchart | Table
Spo064650.70Barchart | Table
Spo178560.70Barchart | Table
Spo142710.69Barchart | Table
Spo117330.69Barchart | Table
Spo011840.69Barchart | Table
Spo229060.69Barchart | Table
Spo126230.69Barchart | Table
Spo161610.69Barchart | Table
Spo110950.68Barchart | Table
Spo202440.68Barchart | Table
Spo200650.68Barchart | Table
Spo238520.68Barchart | Table
Spo126630.68Barchart | Table
Spo027310.68Barchart | Table
Spo235560.68Barchart | Table
Spo227610.68Barchart | Table
Spo066810.68Barchart | Table
Spo123220.68Barchart | Table
Spo197220.67Barchart | Table
Spo015310.67Barchart | Table
Spo046860.67Barchart | Table
Spo060410.67Barchart | Table
Spo106580.67Barchart | Table
Spo119190.67Barchart | Table
Spo139520.67Barchart | Table
Spo152700.67Barchart | Table
Spo153620.67Barchart | Table
Spo154240.67Barchart | Table
Spo159110.67Barchart | Table
Spo179210.67Barchart | Table
Spo184510.67Barchart | Table
Spo235070.67Barchart | Table
Spo236100.67Barchart | Table
Spo268060.67Barchart | Table
Spo270040.67Barchart | Table
Spo166520.66Barchart | Table
Spo177790.66Barchart | Table
Spo268330.66Barchart | Table
Spo048650.66Barchart | Table
Spo237270.66Barchart | Table
Spo036620.66Barchart | Table
Spo142750.66Barchart | Table
Spo135160.66Barchart | Table
Spo028180.66Barchart | Table
Spo026060.66Barchart | Table
Spo134400.66Barchart | Table
Spo251290.66Barchart | Table
Spo160490.66Barchart | Table
Spo132020.66Barchart | Table
Spo252920.66Barchart | Table
Spo180500.66Barchart | Table
Spo019980.66Barchart | Table
Spo185750.66Barchart | Table
Spo106730.66Barchart | Table
Spo093510.66Barchart | Table
Spo198170.66Barchart | Table
Spo075860.66Barchart | Table
Spo068050.66Barchart | Table
Spo059930.66Barchart | Table
Spo119180.65Barchart | Table
Spo207040.65Barchart | Table
Spo074260.65Barchart | Table
Spo050930.65Barchart | Table
Spo150680.65Barchart | Table
Spo059550.65Barchart | Table
Spo100530.65Barchart | Table
Spo300230.65Barchart | Table
Spo052250.65Barchart | Table
Spo200110.65Barchart | Table
Spo085400.65Barchart | Table
Spo036540.65Barchart | Table