Spo06748 (gene)

Overview
NameSpo06748
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00619 : 240633 .. 241307 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAACTGGGGCTGGCCAGCAATCGGAATTGATCTCGGGTCTAGATTTTCAAGTGTAGGAGTTTGTCAGTATGACCGAGTTGATATTATAATGAACGATTAGGGCAACAGGAAAAACACCATCTTATGTTGCTTTTGTTGATAGTCATTGCCTTGTTGGTGATGCAGTTTTCGTAGTACTGCTATGAAACCAAAGGGGTGAAAGTTTTATTTGGAAATTTCTTTGACACAAAATTGATGCAGATTAAAGGAGAAGTAGAAGCCTTAGAACGAACCAAAGACGATGAGATGGAGTTGAGTATATTCCTTTCCTCCTTCATTTGTTATATCTGATGGATTTGCTGGTTTATCTTTGTTTTAACTTCATACAGGTCGGAGGGAGATTACAGACAAAGGGGGCAATGTTATGGTGCAAGCACCTACCCGAATGTCACATCCTCTGGAGGAGAGAGAAAACCTAAGACACATGATGAGAAAATAGTTTATGTTTAGTAGAGAATTAGTGAAATTTAGTGGCTTATTTAAGAACATATTGAGTATCATTCAAATTCAGATAGTCGTATACTTCTGTATTTTTGAGATAGATATATAATTTTTAATTGTATTAATTTGTACTCATTAGTTTTGTAGATTGAAAACTTTAGATGAAATGAAATAATGTTTTTTTGAA

mRNA sequence

ATGGAAGAAAACTGGGGCTGGCCAGCAATCGGAATTGATCTCGGGTCTAGATTTTCAAGTGTAGGAGTTTGTCAGTATGACCGATACTGCTATGAAACCAAAGGGGTGAAAGTTTTATTTGGAAATTTCTTTGACACAAAATTGATGCAGATTAAAGGAGAAGTAGAAGCCTTAGAACGAACCAAAGACGATGAGATGGAGTCGGAGGGAGATTACAGACAAAGGGGGCAATGTTATGGTGCAAGCACCTACCCGAATGTCACATCCTCTGGAGGAGAGAGAAAACCTAAGACACATGATGAGAAAATAGTTTATGTTTAGTAGAGAATTAGTGAAATTTAGTGGCTTATTTAAGAACATATTGAGTATCATTCAAATTCAGATAGTCGTATACTTCTGTATTTTTGAGATAGATATATAATTTTTAATTGTATTAATTTGTACTCATTAGTTTTGTAGATTGAAAACTTTAGATGAAATGAAATAATGTTTTTTTGAA

Coding sequence (CDS)

ATGGAAGAAAACTGGGGCTGGCCAGCAATCGGAATTGATCTCGGGTCTAGATTTTCAAGTGTAGGAGTTTGTCAGTATGACCGATACTGCTATGAAACCAAAGGGGTGAAAGTTTTATTTGGAAATTTCTTTGACACAAAATTGATGCAGATTAAAGGAGAAGTAGAAGCCTTAGAACGAACCAAAGACGATGAGATGGAGTCGGAGGGAGATTACAGACAAAGGGGGCAATGTTATGGTGCAAGCACCTACCCGAATGTCACATCCTCTGGAGGAGAGAGAAAACCTAAGACACATGATGAGAAAATAGTTTATGTTTAG

Protein sequence

MEENWGWPAIGIDLGSRFSSVGVCQYDRYCYETKGVKVLFGNFFDTKLMQIKGEVEALERTKDDEMESEGDYRQRGQCYGASTYPNVTSSGGERKPKTHDEKIVYV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06748.1Spo06748.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo06748.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06748.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06748.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06748.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 48..68
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000023 maltose metabolic process
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0051788 response to misfolded protein
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0045859 regulation of protein kinase activity
biological_process GO:0046838 phosphorylated carbohydrate dephosphorylation
biological_process GO:0006552 leucine catabolic process
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0043248 proteasome assembly
biological_process GO:2000123 positive regulation of stomatal complex development
biological_process GO:0042023 DNA endoreduplication
biological_process GO:0008283 cell proliferation
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0009750 response to fructose
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006397 mRNA processing
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0009744 response to sucrose
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0051017 actin filament bundle assembly
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006574 valine catabolic process
biological_process GO:0051301 cell division
biological_process GO:0051302 regulation of cell division
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0006816 calcium ion transport
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process GO:0005983 starch catabolic process
biological_process GO:0032259 methylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0000186 activation of MAPKK activity
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009987 cellular process
biological_process GO:0009630 gravitropism
biological_process GO:0031047 gene silencing by RNA
cellular_component GO:0005634 nucleus
cellular_component GO:0009343 biotin carboxylase complex
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005829 cytosol
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0055029 nuclear DNA-directed RNA polymerase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000785 chromatin
cellular_component GO:0016020 membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0050308 sugar-phosphatase activity
molecular_function GO:2001070 starch binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0019003 GDP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0019905 syntaxin binding
molecular_function GO:0004075 biotin carboxylase activity
molecular_function GO:0003779 actin binding
molecular_function GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008022 protein C-terminus binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0004709 MAP kinase kinase kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0004485 methylcrotonoyl-CoA carboxylase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0051213 dioxygenase activity
molecular_function GO:0008897 holo-[acyl-carrier-protein] synthase activity
molecular_function GO:0005525 GTP binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo173860.75Barchart | Table
Spo064650.74Barchart | Table
Spo054440.74Barchart | Table
Spo106610.74Barchart | Table
Spo105000.73Barchart | Table
Spo051270.72Barchart | Table
Spo110690.72Barchart | Table
Spo024070.72Barchart | Table
Spo168040.72Barchart | Table
Spo235070.71Barchart | Table
Spo018410.71Barchart | Table
Spo020650.71Barchart | Table
Spo265600.71Barchart | Table
Spo109660.70Barchart | Table
Spo049990.70Barchart | Table
Spo030020.70Barchart | Table
Spo056400.70Barchart | Table
Spo222560.69Barchart | Table
Spo133180.69Barchart | Table
Spo097640.69Barchart | Table
Spo121070.69Barchart | Table
Spo229700.69Barchart | Table
Spo270040.69Barchart | Table
Spo228940.69Barchart | Table
Spo038510.69Barchart | Table
Spo038650.69Barchart | Table
Spo049850.69Barchart | Table
Spo057650.69Barchart | Table
Spo044480.68Barchart | Table
Spo201870.68Barchart | Table
Spo268140.68Barchart | Table
Spo154240.68Barchart | Table
Spo034420.68Barchart | Table
Spo198740.68Barchart | Table
Spo018010.68Barchart | Table
Spo013970.68Barchart | Table
Spo104270.68Barchart | Table
Spo106730.68Barchart | Table
Spo148260.68Barchart | Table
Spo059280.68Barchart | Table
Spo092190.68Barchart | Table
Spo240660.68Barchart | Table
Spo092140.68Barchart | Table
Spo069050.68Barchart | Table
Spo070790.68Barchart | Table
Spo075860.68Barchart | Table
Spo127190.68Barchart | Table
Spo204970.68Barchart | Table
Spo079590.68Barchart | Table
Spo197030.67Barchart | Table
Spo010480.67Barchart | Table
Spo018400.67Barchart | Table
Spo021750.67Barchart | Table
Spo022540.67Barchart | Table
Spo023480.67Barchart | Table
Spo027490.67Barchart | Table
Spo031630.67Barchart | Table
Spo031850.67Barchart | Table
Spo041790.67Barchart | Table
Spo048850.67Barchart | Table
Spo064640.67Barchart | Table
Spo076090.67Barchart | Table
Spo112960.67Barchart | Table
Spo116730.67Barchart | Table
Spo126230.67Barchart | Table
Spo140840.67Barchart | Table
Spo149420.67Barchart | Table
Spo152750.67Barchart | Table
Spo177550.67Barchart | Table
Spo225290.67Barchart | Table
Spo236640.67Barchart | Table
Spo245660.67Barchart | Table
Spo253300.67Barchart | Table
Spo255510.67Barchart | Table
Spo267890.67Barchart | Table
Spo085280.66Barchart | Table
Spo078820.66Barchart | Table
Spo252430.66Barchart | Table
Spo010690.66Barchart | Table
Spo214650.66Barchart | Table
Spo038610.66Barchart | Table
Spo013130.66Barchart | Table
Spo026470.66Barchart | Table
Spo233550.66Barchart | Table
Spo100210.66Barchart | Table
Spo099930.66Barchart | Table
Spo240180.66Barchart | Table
Spo116230.66Barchart | Table
Spo116410.66Barchart | Table
Spo116800.66Barchart | Table
Spo119180.66Barchart | Table
Spo099400.66Barchart | Table
Spo300130.66Barchart | Table
Spo087400.66Barchart | Table
Spo162180.66Barchart | Table
Spo167590.66Barchart | Table
Spo059550.66Barchart | Table
Spo003970.66Barchart | Table
Spo002830.66Barchart | Table
Spo050930.66Barchart | Table
Spo046570.66Barchart | Table
Spo041040.66Barchart | Table
Spo206960.66Barchart | Table
Spo154200.65Barchart | Table
Spo076850.65Barchart | Table
Spo211320.65Barchart | Table
Spo164210.65Barchart | Table
Spo214310.65Barchart | Table
Spo023450.65Barchart | Table
Spo172200.65Barchart | Table
Spo172350.65Barchart | Table
Spo054870.65Barchart | Table
Spo217290.65Barchart | Table
Spo267680.65Barchart | Table
Spo247360.65Barchart | Table
Spo035250.65Barchart | Table
Spo100190.65Barchart | Table
Spo022010.65Barchart | Table