Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTTTGCCGGGTCTCGCTCACCCGACAGTGAAACCGGTAGCTTGCTCAAAGAAAAGTATAGACAATTTAGACACCATTACACTACCCGAACTTTAATTTATCGTTGATGTCGGTTTGCGGTGCACAAAATTCTGCAAATCCCCATTTCTTCAAACCCCAAAAAAATCCTCAAACCCTAGAATTGTAGATGAAAAATCCCAGATTTTTTTATGAAAGTTGATTTCAATGGCATCAATAGCAGACCAAGAGCAAGAAAACAATGCTTCCGAAGTTATGCTTTTGTCTAAATTTGGGGGAAAACAGAGGAGTAAGAACAAATGGAGGAAGCTTTCGAAGCATTCATCTACTACCTCAGATTCCCTAATCAACACCTTGGATGATGGTTGCCTTATGCACATTTTCAGCTTCCTCTCTCCTCTTCCTGGTTTGTTACTTTACCCTAATATTAATTTTCTCGAATTTCCAATTTGGATTTGAAACCCTAATTGATTGCTTAATTTGGCATTTTTTATCATCATGATCTAATTTAGAGTATTTGAATCTGATTGGTGGTAGACCTAAATTGTATTTGACTGTTTAACTGAGCTAAATTGTGTCTCTTTTGTGAATTTGAGGTTATATGAGGTTGAAAGTCTGAATTTTTGTAATGGGGGGTTTTACTGGATTCTTATTCTCGATTCAGGTTTGTTAAATTGTTGTGAAATGATTAATATTTGGTATTAGAAATGAATGAATTATATATATTCTACGAATAGAAAGGTGTCGTCTTGGTTTTTAAAAGGATCGTATTCGTTTTATAATTTGTTGTCCTTTTAGGGCTATTGCTGTCTGTTGGCCATTGCTTGAGCTGAAATTGACTATAATTTGGATATATCTTTCAGTTGTTCTTGTTCTGAATTAGACTGCTTAATGAATTTTAAAGTTAGTGACTTTTGTCTTGTCTGATTGAATTGGTCTGCCTCGAGAGTTTCCTCAATTATACTTCGTATTACCTTTAAAATAATGTATGAAGAAGTTGGGGTATAGGGTTGACTGGGCAGTTAGTTCAGTTCTGGACTTAGCGAACCGAATTGGCAGTAGTCCTTGTTGGTAGGAGTTCATTTAGCTTATAGAATTGAGCGAGGCAGTTGGTTCTGGAAGATATGCTTGAATATGTTTGCAGTCTTTGCTCTTATTCTCTTTTACAGTTTGTGGTAGGAGTTCATTTAGCTTATAGTCCTTGTTGATAGTGCTATTGTTCAGATGGATATGGTTGTTTTTTGATGGAGGATGGGCTTATATATTAGTTTGTTTCTGCATTATTACTACGGTATATCAGCTGTTGTCACATATTACTTTTGAGTTTGCAGATCGTTATAACACCGCCCTCGTTTGCCACAGATGGCGATTCTTGGCATGCCACCCACACCTATGGTTGCGAGTAGACCGAACTATTAAGGATTTATCAGAACCTGGTGTGTACTCCAGTATTGATGCCGCTGTCTCTGCAGCAAAGTGAGTACAGATTAAACTGGCTGTCTTATGGTTTATCTTTAAAGAATCAATTAAACTCACAGGCTTCTTATATTTCAGGCCTGGTGATACAATCCTGATTGCTTCAGGAGGTGTCCATATTACCTCTAATATTCAGATCAAGAAGCCTCTCTGCCTGGTATATAATAATCCTCTCTTCTCAATAATATCTTTACTTGTTCCTTCTCTACTGTATCCTGGGTTATAAGATTGAACTCATGTTGTAGTTTCTACCCTCCCTTCATTGTGCCAGTCATCTCCTTGGTGTTGTATGACACTTCACCTTTGAATTCCGGAGCTTAATATGATTTACTTTTTTCTGATCTTGATTGTAAGCTTGTACGGTATTGCAAGTTTGCAACTTGTGTGCTGTGTAAATGTCCATCTTCTACGTGGTTGGAGTGTTTCTGTTTTATGCTTTCCTGACCTTTTCCCTCCCATCTTTTTGGTGCGAGGATGGGGACAAGAGAACTATGTAACCAAGTATGGCCGTGCAGATATTTATGCATATTCACACAATTTAGGGCACACCTGCGGGTAGCCGTTTCTTGTCAGTGTTATTGTAGAAGCATAATTCAGTTTCTTCAATCCATCGCCTTTGGTTCCTTCTCTTCCTGTTGGTACAGGTTGGATGCTGTATTTTTTTTTTGCGCACCCACGTTAGCTTGCTTTTGTACTGATTATGTATCATCTTTTACCCAACTATTTGAATACATTCATGAAGAAAGCATATCTAATTAGTTGCATTGCATTTTTTTTTTTGCTCTACAGCACCACACACATCTTATTTTCTTCTTGAGTATTGTTGGGTCAAAGACTTAGATGACAGGGGCAAGTCCCAAGAGCATCCGAATATTTCCCAAAATCATATGGGGTTTAAAAATTAGGTAGATTTGTACTTTTGTGTGCACAACTAGGTATAGTTGTTATTTGTGCGAAACTTAGTTTCAGAAGTAGATTATAATGATGCGATGCGTGGAAGAACTTTTGTTGTTTTTATGCTTCCATCACTCTGCAGTCATTTGTATCTTATTCAAGTATTGTTCTAGCAATTAAGCACATCTTTGAAGCATGTCCTCTGTAAAGTAATATATCGGGTTGTCTTTTCTAATTGAGTTTTTTCGTGATCATCACTATTGCCTTCTAATCTTCTTTTTTCTTTTTTTGCTCAGATAGGTGGAGGTGAACTTCCTGAAGAAACTACTCTTCTTTGTTCCAGGGGCTCTGACAGGTTCGCAAAATTTCTTTGCTGTGCTTTCTACTGCAGGGCTTTATTGAACAAGCCTTTATAAACTGATGCACCCCTGTTAATCTTGATCATTTCTAAGTAGAAAGCACAGATGTTTAAGTTATCCTGGGGTTGGAGCATTTCACGAATCTGATTGAGCTTTTGTTTCCCACTCATCTGTGCCAGACAAACCTTCATGTTAGAGAGAAACACAGATGTTTAAGTTATCCTTGAATAGAGGCTAGGTTGGTGGGTGAAGTAGGGCTTCTTGGTAGTGACCTTATATTATTTTTGGATGCAAATGACAGTATTGTGTGTCCATTGTTTGTTTATTGTTGGGCAGTGCACTGGAACTGCTTTCGACCTGCAAAGTGACAAACTTGACAGTGAAGGCAGAGCTCGGTTGCTGCTTGCTTCATAGGAGTGGGAGGTTGATTATTGACAGTTGTGTCCTCCAATGTGAAACAGATCCTCTGGATTATCTTTCATGCCCCATAGTTAGCTCAGCCACGGGGCCGAAGAAGTTGCCATCATCAACGGCCCGGGGAGATGGTGTCACTGTTTCTCGTACCCGGATTGAAGGTGGGGCCAAAGCAGTTTTGACCATTGGCACCCTTGTCCTGCAGCGTGTACGAGTAATTTATGGCCGTACGTCTGTGCTTTTCTGGTTTGAAGTCGAGCACCAATGATGGTTCGGTTAACTTCATCCTCAGCCCTTGTAACATTCAAGAAAAAACTGTACCTTTTCAATTCATTGTTTGTAAAATTTTCGTTTCCTTGTATTCTGTATGTATATTACTCTATAGTTTATTTTCATCATTCATAAGGCCACATTTGCGAAGACTTTTTAAGGTATTTTGGACTGAAGTTAAGACTTGTTGGTAGTCCAAACCCATCCACTTGTGTATTCAACTTTCGCGGCGACCTTGAGAGTTGAGACAGTGGAACACCATTGGAGTCGAGATAACACAAAAGAATTTGGGAATACACAGTATTTCATTCAGAAAAACGTGATGATGTCCATGTAACACAGTTATTAAATTGAGAGAGATAATTGACACCCTATTTCTATCGCTTCCATACACTTCTACATCAGTAATGAATATATCATGTACTTCCCTCCATTTTATTGTAAGTGTCACAAATGTTGTCCAAATTTAGTTTGTCACATTTTCATATTTGGAAAGCGAAACTCGTATTATAAGTATGTAT CTTTTTGCCGGGTCTCGCTCACCCGACAGTGAAACCGGTAGCTTGCTCAAAGAAAAGTATAGACAATTTAGACACCATTACACTACCCGAACTTTAATTTATCGTTGATGTCGGTTTGCGGTGCACAAAATTCTGCAAATCCCCATTTCTTCAAACCCCAAAAAAATCCTCAAACCCTAGAATTGTAGATGAAAAATCCCAGATTTTTTTATGAAAGTTGATTTCAATGGCATCAATAGCAGACCAAGAGCAAGAAAACAATGCTTCCGAAGTTATGCTTTTGTCTAAATTTGGGGGAAAACAGAGGAGTAAGAACAAATGGAGGAAGCTTTCGAAGCATTCATCTACTACCTCAGATTCCCTAATCAACACCTTGGATGATGGTTGCCTTATGCACATTTTCAGCTTCCTCTCTCCTCTTCCTGATCGTTATAACACCGCCCTCGTTTGCCACAGATGGCGATTCTTGGCATGCCACCCACACCTATGGTTGCGAGTAGACCGAACTATTAAGGATTTATCAGAACCTGGTGTGTACTCCAGTATTGATGCCGCTGTCTCTGCAGCAAAGCCTGGTGATACAATCCTGATTGCTTCAGGAGGTGTCCATATTACCTCTAATATTCAGATCAAGAAGCCTCTCTGCCTGATAGGTGGAGGTGAACTTCCTGAAGAAACTACTCTTCTTTGTTCCAGGGGCTCTGACAGTGCACTGGAACTGCTTTCGACCTGCAAAGTGACAAACTTGACAGTGAAGGCAGAGCTCGGTTGCTGCTTGCTTCATAGGAGTGGGAGGTTGATTATTGACAGTTGTGTCCTCCAATGTGAAACAGATCCTCTGGATTATCTTTCATGCCCCATAGTTAGCTCAGCCACGGGGCCGAAGAAGTTGCCATCATCAACGGCCCGGGGAGATGGTGTCACTGTTTCTCGTACCCGGATTGAAGGTGGGGCCAAAGCAGTTTTGACCATTGGCACCCTTGTCCTGCAGCGTGTACGAGTAATTTATGGCCGTACGTCTGTGCTTTTCTGGTTTGAAGTCGAGCACCAATGATGGTTCGGTTAACTTCATCCTCAGCCCTTGTAACATTCAAGAAAAAACTGTACCTTTTCAATTCATTGTTTGTAAAATTTTCGTTTCCTTGTATTCTGTATGTATATTACTCTATAGTTTATTTTCATCATTCATAAGGCCACATTTGCGAAGACTTTTTAAGGTATTTTGGACTGAAGTTAAGACTTGTTGGTAGTCCAAACCCATCCACTTGTGTATTCAACTTTCGCGGCGACCTTGAGAGTTGAGACAGTGGAACACCATTGGAGTCGAGATAACACAAAAGAATTTGGGAATACACAGTATTTCATTCAGAAAAACGTGATGATGTCCATGTAACACAGTTATTAAATTGAGAGAGATAATTGACACCCTATTTCTATCGCTTCCATACACTTCTACATCAGTAATGAATATATCATGTACTTCCCTCCATTTTATTGTAAGTGTCACAAATGTTGTCCAAATTTAGTTTGTCACATTTTCATATTTGGAAAGCGAAACTCGTATTATAAGTATGTAT ATGGCATCAATAGCAGACCAAGAGCAAGAAAACAATGCTTCCGAAGTTATGCTTTTGTCTAAATTTGGGGGAAAACAGAGGAGTAAGAACAAATGGAGGAAGCTTTCGAAGCATTCATCTACTACCTCAGATTCCCTAATCAACACCTTGGATGATGGTTGCCTTATGCACATTTTCAGCTTCCTCTCTCCTCTTCCTGATCGTTATAACACCGCCCTCGTTTGCCACAGATGGCGATTCTTGGCATGCCACCCACACCTATGGTTGCGAGTAGACCGAACTATTAAGGATTTATCAGAACCTGGTGTGTACTCCAGTATTGATGCCGCTGTCTCTGCAGCAAAGCCTGGTGATACAATCCTGATTGCTTCAGGAGGTGTCCATATTACCTCTAATATTCAGATCAAGAAGCCTCTCTGCCTGATAGGTGGAGGTGAACTTCCTGAAGAAACTACTCTTCTTTGTTCCAGGGGCTCTGACAGTGCACTGGAACTGCTTTCGACCTGCAAAGTGACAAACTTGACAGTGAAGGCAGAGCTCGGTTGCTGCTTGCTTCATAGGAGTGGGAGGTTGATTATTGACAGTTGTGTCCTCCAATGTGAAACAGATCCTCTGGATTATCTTTCATGCCCCATAGTTAGCTCAGCCACGGGGCCGAAGAAGTTGCCATCATCAACGGCCCGGGGAGATGGTGTCACTGTTTCTCGTACCCGGATTGAAGGTGGGGCCAAAGCAGTTTTGACCATTGGCACCCTTGTCCTGCAGCGTGTACGAGTAATTTATGGCCGTACGTCTGTGCTTTTCTGGTTTGAAGTCGAGCACCAATGA MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06745.1 vs. NCBI nr
Match: gi|902182934|gb|KNA10016.1| (hypothetical protein SOVF_148160 [Spinacia oleracea]) HSP 1 Score: 547.4 bits (1409), Expect = 1.500e-152 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo06745.1 vs. NCBI nr
Match: gi|731319781|ref|XP_010670456.1| (PREDICTED: F-box protein SKIP5 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 473.0 bits (1216), Expect = 3.500e-130 Identity = 238/278 (85.61%), Postives = 252/278 (90.65%), Query Frame = 1
BLAST of Spo06745.1 vs. NCBI nr
Match: gi|225465959|ref|XP_002269519.1| (PREDICTED: F-box protein SKIP5 isoform X1 [Vitis vinifera]) HSP 1 Score: 383.3 bits (983), Expect = 3.700e-103 Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 1
BLAST of Spo06745.1 vs. NCBI nr
Match: gi|802574050|ref|XP_012068632.1| (PREDICTED: F-box protein SKIP5 [Jatropha curcas]) HSP 1 Score: 379.8 bits (974), Expect = 4.100e-102 Identity = 187/253 (73.91%), Postives = 217/253 (85.77%), Query Frame = 1
BLAST of Spo06745.1 vs. NCBI nr
Match: gi|702425827|ref|XP_010067744.1| (PREDICTED: F-box protein SKIP5 [Eucalyptus grandis]) HSP 1 Score: 378.3 bits (970), Expect = 1.200e-101 Identity = 186/252 (73.81%), Postives = 213/252 (84.52%), Query Frame = 1
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148160 PE=4 SV=1) HSP 1 Score: 547.4 bits (1409), Expect = 1.000e-152 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FMM5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041360 PE=4 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 2.500e-130 Identity = 238/278 (85.61%), Postives = 252/278 (90.65%), Query Frame = 1
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: D7TXB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0139g00260 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 2.600e-103 Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 1
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A067L7M8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24514 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 2.800e-102 Identity = 187/253 (73.91%), Postives = 217/253 (85.77%), Query Frame = 1
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A059BIU3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03245 PE=4 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 8.200e-102 Identity = 186/252 (73.81%), Postives = 213/252 (84.52%), Query Frame = 1
BLAST of Spo06745.1 vs. ExPASy Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 5.300e-94 Identity = 176/276 (63.77%), Postives = 215/276 (77.90%), Query Frame = 1
BLAST of Spo06745.1 vs. TAIR (Arabidopsis)
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5) HSP 1 Score: 345.5 bits (885), Expect = 3.000e-95 Identity = 176/276 (63.77%), Postives = 215/276 (77.90%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06745.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06745.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo06745.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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