Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCCTTTTCTAATGAGAATGTTGTAAGAGGCTACCAAGTTGATGGTGAAAAAGATGCAGATGACCCTTATAATTCCAATGTGGGTGCAAAAGGAACTACTAAAGGAAGAAAGAAATTTGATAATTTTATTAGAAATGTTGATGTTGTTGAGTCTCTAAAAACTGAGCTTGATATTTATTTGGAAGAGGGCGTCTACATTTGTAATGAGACTGAGACTGAGCATTTTGACCCCTTAAATTGGTGGAGAGCAAACAACTTGAAGTATCGAATTTTATCGAGGATGGCTTGTGATATCCTTGCAATTCCAATCACATCTGTTGCTTCAGAAGCTACTTTTAGTGCCGGCGGTCGTGTTATTGATCCACATAGAGCTAATATCGGTGCTGAAACCGTTCAAATGTTGTTGTGTGGGGAAGACTGGTTAAGGAGCTTTTATGGGATTAAAAGGAAGAAGAAGGTATGTTCTATATCATAAACTAGTACTACGTAAGTAATGGTTTATTCACTTTCAATGCTTTTAATTACTTTGTAATAACTTTCTTATATAGGCAAAGAGTGATGGAGTGACGGAAGTAAACCTTGTTTGAACTTTGAAGATTGATAAATGACACCACCAGGTAAAATGTCAATTAGTTTACATACGTGTAGTAAAATTATTTTGGTTGAGTTTGTTTTAAGACTAATCTTTGATTTTTTAACCTCTTGCAGGAAGGACATAATAAGGTAGAAGATATAACTCAAGTCTGATGGAGGATAGAAGAGATGAATTAAAGATCAGAATGTTGATGTGAAAAGATTAGAACTAATTGCAATTAGTTTGTTAGATTTTGATTTTTAGAGTATTTTTATTTGAGGAGATTCTAATTAATAAAATAGTATTAAAAAGTATAAGATGTTAACTTTTTATTTGGGTTTGGTTATGTTTTTATGTTTTATAAATTATAATATCTTAAAAAAATAATATTTCATAATGTTAAG ATGGAAGCCTTTTCTAATGAGAATGTTGTAAGAGGCTACCAAGTTGATGGTGAAAAAGATGCAGATGACCCTTATAATTCCAATGTGGGTGCAAAAGGAACTACTAAAGGAAGAAAGAAATTTGATAATTTTATTAGAAATGTTGATGTTGTTGAGTCTCTAAAAACTGAGCTTGATATTTATTTGGAAGAGGGCGTCTACATTTGTAATGAGACTGAGACTGAGCATTTTGACCCCTTAAATTGGTGGAGAGCAAACAACTTGAAGTATCGAATTTTATCGAGGATGGCTTGTGATATCCTTGCAATTCCAATCACATCTGTTGCTTCAGAAGCTACTTTTAGTGCCGGCGGTCGTGTTATTGATCCACATAGAGCTAATATCGGTGCTGAAACCGTTCAAATGTTGTTGTGTGGGGAAGACTGGTTAAGGAGCTTTTATGGGATTAAAAGGAAGAAGAAGGCAAAGAGTGATGGAGTGACGGAAGTAAACCTTGTTTGAACTTTGAAGATTGATAAATGACACCACCAGGAAGGACATAATAAGGTAGAAGATATAACTCAAGTCTGATGGAGGATAGAAGAGATGAATTAAAGATCAGAATGTTGATGTGAAAAGATTAGAACTAATTGCAATTAGTTTGTTAGATTTTGATTTTTAGAGTATTTTTATTTGAGGAGATTCTAATTAATAAAATAGTATTAAAAAGTATAAGATGTTAACTTTTTATTTGGGTTTGGTTATGTTTTTATGTTTTATAAATTATAATATCTTAAAAAAATAATATTTCATAATGTTAAG ATGGAAGCCTTTTCTAATGAGAATGTTGTAAGAGGCTACCAAGTTGATGGTGAAAAAGATGCAGATGACCCTTATAATTCCAATGTGGGTGCAAAAGGAACTACTAAAGGAAGAAAGAAATTTGATAATTTTATTAGAAATGTTGATGTTGTTGAGTCTCTAAAAACTGAGCTTGATATTTATTTGGAAGAGGGCGTCTACATTTGTAATGAGACTGAGACTGAGCATTTTGACCCCTTAAATTGGTGGAGAGCAAACAACTTGAAGTATCGAATTTTATCGAGGATGGCTTGTGATATCCTTGCAATTCCAATCACATCTGTTGCTTCAGAAGCTACTTTTAGTGCCGGCGGTCGTGTTATTGATCCACATAGAGCTAATATCGGTGCTGAAACCGTTCAAATGTTGTTGTGTGGGGAAGACTGGTTAAGGAGCTTTTATGGGATTAAAAGGAAGAAGAAGGCAAAGAGTGATGGAGTGACGGAAGTAAACCTTGTTTGA MEAFSNENVVRGYQVDGEKDADDPYNSNVGAKGTTKGRKKFDNFIRNVDVVESLKTELDIYLEEGVYICNETETEHFDPLNWWRANNLKYRILSRMACDILAIPITSVASEATFSAGGRVIDPHRANIGAETVQMLLCGEDWLRSFYGIKRKKKAKSDGVTEVNLV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06687.1 vs. NCBI nr
Match: gi|763751615|gb|KJB19003.1| (hypothetical protein B456_003G080400 [Gossypium raimondii]) HSP 1 Score: 159.1 bits (401), Expect = 6.800e-36 Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = 1
BLAST of Spo06687.1 vs. NCBI nr
Match: gi|720080874|ref|XP_010242103.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Nelumbo nucifera]) HSP 1 Score: 151.4 bits (381), Expect = 1.400e-33 Identity = 71/142 (50.00%), Postives = 104/142 (73.24%), Query Frame = 1
BLAST of Spo06687.1 vs. NCBI nr
Match: gi|743775236|ref|XP_010917997.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Elaeis guineensis]) HSP 1 Score: 141.7 bits (356), Expect = 1.100e-30 Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 1
BLAST of Spo06687.1 vs. NCBI nr
Match: gi|747091477|ref|XP_011093469.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Sesamum indicum]) HSP 1 Score: 138.7 bits (348), Expect = 9.500e-30 Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 1
BLAST of Spo06687.1 vs. NCBI nr
Match: gi|747091475|ref|XP_011093468.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Sesamum indicum]) HSP 1 Score: 138.7 bits (348), Expect = 9.500e-30 Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 1
BLAST of Spo06687.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NY67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G080400 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.700e-36 Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = 1
BLAST of Spo06687.1 vs. UniProtKB/TrEMBL
Match: A0A068V3K2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042719001 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 2.100e-28 Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 1
BLAST of Spo06687.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CUC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g038210 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.100e-27 Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 1
BLAST of Spo06687.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C3S3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g143000 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 1.800e-27 Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 1
BLAST of Spo06687.1 vs. UniProtKB/TrEMBL
Match: A0A0R0KIY3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G127700 PE=4 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 2.400e-27 Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 1
BLAST of Spo06687.1 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2) HSP 1 Score: 91.7 bits (226), Expect = 8.300e-18 Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1
BLAST of Spo06687.1 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 8.300e-18 Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1
BLAST of Spo06687.1 vs. ExPASy Swiss-Prot
Match: RSLE2_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica GN=Os03g0733400 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.200e-16 Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 1
BLAST of Spo06687.1 vs. ExPASy Swiss-Prot
Match: RSLE1_ORYSJ (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica GN=Os05g0239150 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.500e-16 Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 1
BLAST of Spo06687.1 vs. ExPASy Swiss-Prot
Match: DSLE_ARATH (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana GN=HAT PE=1 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 1.000e-15 Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1
BLAST of Spo06687.1 vs. TAIR (Arabidopsis)
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain) HSP 1 Score: 84.7 bits (208), Expect = 5.700e-17 Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06687.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06687.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06687.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo06687.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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