Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCATGTGATGGAGTAAAATAAGAGAGTTTTTGTCACGCAATTTTCAAAGAGCGTGCACACGGCACAGTATCAAATTATTAAAATAAGTCATATATAAAGCCCCAAATTGGATAGAGCCTGATTATTAAAAGCTCCAACATCTTTCTCCCTTCCTCTAACAAAATAATTTTCTCCTACCTAGTAATTACAATGGGCGTCGGAATGTCATCAACCGACGGCGGAAATCACGGCGGAGAAACGCCGGAATATCGTCGTAAACTAGAAGATATACCGGAAAGTTGTATAGCTATGGTATTAGGCCACCTTGACCCGCCGGAGATTTGCCGTTTGGCTCGGCTTAATCGGGCCTTTCGCGGTGCTTCCTCCGCTGATTTCATATGGGAGACAAAACTTCCTACGAATTATTCGTTCATTGTTAATAAGATTTCTGAATTGAATCATAAGAATGATGATGATATGAAGAATTACGGTGGTAGTAAAGATATATCCACGGGTTTAAATAAAAAAGATATTTTTGCCCGCCTTTCTCGCCACAACCTTTTCGATTCCGGCAATAAGGTAACTCATATCCTCTGCGTCTCTTTTGTTACGTTGTTTAATACGGAGTACTCGACTATTAAGTCGGAAGTCGTGTAATTTTCTGCAATTTTCAATCTCATACGAAGTCGAATTATTTTCTTTTCTTTTGGTTGTACTGTAGCATGTTAGCTAACAACTATATCGAATAAACAATCTTTATTTAATATTTTTAAGAAAATGTTGCATTAAAATAAAATAGAAGATGAAATTATTAGAGTTTTGAAGTTTTCTTGACTCAAATTCTATACATAAAGAAGTAATCTTCATTCTTCAAATTGTTATAACTTATACGTAGTTGTTTTTGCTTAGAAGTTAAGCCAACCGCTATACAAATATACAATTGTATACTCTGTATATACGGTCGTGTATACTTTTCCGAACTATTTTGTTTAGAATATTAGACTATCTAATCTAATTATTCAAACATTGAGTAGTTTGATTTCATCCATCATTAACTATTAAGTCATTCATCATCAAACATCAATGATATAAAGAATACATTCACATGTATTGTAGTATTCAAAAAAAAAATTACTACGGTGGATTGGTGGGGGAAAAGTTTTTTTAAAGCATGTAAAATAAAGGTAAAAGTGCCTATTACTTTTTTATTTTTATGTACGGTTGATGTTTTGTGCAAGCATATATAGTTAGGGACGTGGGATCATCTATATATTATATACTCGGGTGGTCTTTAAGAATATGTATACTTTAAAAATTTGGAATTGTATACTTTTTAATAATGTATGATAGAGATACAAATGATATAAAATGTACACATCTTGTGGAATGAAAGAAGGTATATAAGGATGATTACGTTAATTTAACTGAAGACATGACTATAACTCTATAAGGGGAGTATCCCTTAGCTTTATAAAGGGACAAATTTTTTCGCTTTAATCAATGTAGAACGCTCACATGTGATGATTTATGGGTCTAAATCTTTAACACAAATAAACTCATTTTTTTCCAAGGTCAATTTTGGTTCATTAGTCACTCGAAAATGCATGAATTTTATTTGTTTTGACAAAAAACTGCCTTAAATCAAGCAGTTTTGAGTTGTGATGTATGGATCTAGTTTATAAAAGATTGAAAAAGTTAGAATAGTCAATCATAAAAATTGTCTTTATATCCACCTGCAAGAGGTGGCGAGCTGTTTTCAACTCTAAATCACGATGTATCGGATATTTGTTTTTTTTTTAACATTTGAAGAAAGAGGGAGTGTACATACCCTGTGGTTTATAGAATTGTAGGTTAGATGTTTCACTCTGAATTGGTGTCTTTTATTTCTTTGTTTCTTTCTTGAATTGATGTTGATTTATATGAATTTTATTTTTATTGACAAGCTTTCATGCCAATTAAGGATAAGATTAAGGTGATTCATTTGGAGATGCTAAAATGTGTGATTTATTAGAAAGCAAGGTGTACTTACTGTACTGTAATATCAATGTCACCATCGATGATTCGATATGGACAAACGTATATATGGAGAATTAATGGAGTAGAGTAGCTAATAATCATTATTAACGTTCATGTCATTATGGAATCGATTAGTCGTAGTCTATCAGACTGTCTTAAATTTACCATGAAAATGATACTTATACACTCATATTAAGGTGATTCATTTGAACAGATTGCTTATGAATAGTTTTCATTCATCAGTCCTAAAATAGCATAATCGCCTTATCTTTCATGACATGGACTGCTAGATTAGTGATTTATTTTCTTGGATTCTGTTTGGTAGGAAATATGGTTGGACAAGAAAACTGGAGGTGTATGTGTGTCAATATCATCAAAGGCACTGTCAATTACTGGTATTGATGACAGGCGATACTGGAATCACATTCCCACTGAGGAATCTAGGTGAGCTAGCTGCTTTATTTATCATCTTTGATTTCACTGTGATTGTTTGGGATTGTCAGATTTTATGACTCTGTTTTAATCCAGATTGGTCATGTAATGAAGCACCCTATCTTCTTTCATTTTGGTGCATACTCACCAACTATGTTACTCGGACTTGTATACTCATTTCAGACACGGTATGCACATGCACCCAAGTGTTAGACTCGGCTATTATATACTTCTAAGGTGTCGTATTTTGGTGTCTAATTCCATGTCGGAGTGTTGATGATTTGACACTAGGACTTGAGGTGAATTGTAGAGTTTGAGTAATTGGTAACCAATATGTTGATAATAATAATAGTTCCCATTAGCTCAAAATCAACTTGTTAGTGTATAGTGAAAGCACCAACTGATTCAAGATGTCCACTTCACCAACTGATTCATTATGTCCACTTCTCCTTGCCTCCTTGGTGGTTGGTTGGCGGCTTGATGCCATCTTTTTGTTGCTAGTCAAAATGGTTAATGATGATAATTATCAAAGTTACACTTCGTATTAAATTGCTGAATGATATAGACATCAACATCAATTTTACCCTGGTGATGCTAACGAGACTCTCAAGCTGAAAGACAGAATTAGGTTTCTTTCGCCCCCCTCAGCCCTCCCCGGCTGCTATTAGAAAGTCAATACAGCGAGCCTTTAGGATCTGGACGAGTCAGTCAATGGTTTCCTATTTTTCCTTAGAAAAGTTGCTTGTATGAATGTTGAAATGGTAATTACTTTGACCTTTTGGTAGAGGCATTGTTTGAAAACAAGGGTTTTCTGATATCATAGCTTCTTGTCTCATAATCTGACTGTCTGAATAGTCGTTTAAGAACAAAAGTCAGGAGACAGCAGCATCTGTTGTTTGATAAGTTTATTAGACTATATTCGGTGTGCTCCTCGAATAAAAAACATGAAAAAGGGGACTATGAAAAAGAAAATATTTATGTAAATACGCTTCCTAGAGAGTTTAAAGATCGAAATAGTTAATGTTGGTTTTTAAGCATTATTAGCAATCAGCCAAAATTAAGACTGTTGGTGATCTCTTGCATTGTTAGTAATATCTTCAATTATTGAAAATAGATTTGGGTTGAAGCAGATTGATTGACTGGTTGTTTAAATGTCTATTTTTCTGGTAGTAGATTCCAGACAGTTGCATATCTTCTTCAGATATGGTGGTTTGAAGTTTGTGGGGAACTGGAGTTCAAATTCCCAGCAGGAACATATAGCCTCTTCTTCAGAATCCAGCTTGGCAAGTCTTCTAAGAGGTTTGGTCGTCGTTCATGTAATGTGGAGCATATACATGGGTGGAACCTAAGACCAGTACGATTCCAGCTGACAACATCAGACGGTCAGCATGCTTCGTCAGAGTGTTATTTGGATAGTCCTGGATCATGGATCCTCTACCACGGAGGAGATTTTGTCGTCAAAGAAACTGATAAATTGACAAAGATTAAGTTTTCAGCTAGGCAAATCGATTGCACCCACATAAAAGGGGGTCTCTCTTTTGATTCTGTCATGATTTTACCCAAGAGTATAGCCAGTAAAGCTAGATAATTTTTGTAGATATATGTTAAATAGTGAGTGTGTCATAGAAAAAAAAACAGAATAGTTTTCAGGTTGGTTTGCATAAGGGCTTTTCCATGTACATATTTTTTTTTTACTAGGGGGAGCTTGGCATTGTTAGCCCATAGTTGTTCTGTTCTGAAGATCGCGCAATCTTATATATTTAGCCTTTAGCAGAAGGCAGTTCTATAAGTGATCTAGGAATTTAGAAGGCAGTACGATGTTTTTTTCAGGTTTGGTTTTTTGAAAGTTTTGTGTATTAAAATTGTTTAATTAGATGATGTTTGCTTTTGAGAATGGGTTAAGGATTTCAGAATAAAAATTAAACAATT CCATGTGATGGAGTAAAATAAGAGAGTTTTTGTCACGCAATTTTCAAAGAGCGTGCACACGGCACAGTATCAAATTATTAAAATAAGTCATATATAAAGCCCCAAATTGGATAGAGCCTGATTATTAAAAGCTCCAACATCTTTCTCCCTTCCTCTAACAAAATAATTTTCTCCTACCTAGTAATTACAATGGGCGTCGGAATGTCATCAACCGACGGCGGAAATCACGGCGGAGAAACGCCGGAATATCGTCGTAAACTAGAAGATATACCGGAAAGTTGTATAGCTATGGTATTAGGCCACCTTGACCCGCCGGAGATTTGCCGTTTGGCTCGGCTTAATCGGGCCTTTCGCGGTGCTTCCTCCGCTGATTTCATATGGGAGACAAAACTTCCTACGAATTATTCGTTCATTGTTAATAAGATTTCTGAATTGAATCATAAGAATGATGATGATATGAAGAATTACGGTGGTAGTAAAGATATATCCACGGGTTTAAATAAAAAAGATATTTTTGCCCGCCTTTCTCGCCACAACCTTTTCGATTCCGGCAATAAGGAAATATGGTTGGACAAGAAAACTGGAGGTGTATGTGTGTCAATATCATCAAAGGCACTGTCAATTACTGGTATTGATGACAGGCGATACTGGAATCACATTCCCACTGAGGAATCTAGATTCCAGACAGTTGCATATCTTCTTCAGATATGGTGGTTTGAAGTTTGTGGGGAACTGGAGTTCAAATTCCCAGCAGGAACATATAGCCTCTTCTTCAGAATCCAGCTTGGCAAGTCTTCTAAGAGGTTTGGTCGTCGTTCATGTAATGTGGAGCATATACATGGGTGGAACCTAAGACCAGTACGATTCCAGCTGACAACATCAGACGGTCAGCATGCTTCGTCAGAGTGTTATTTGGATAGTCCTGGATCATGGATCCTCTACCACGGAGGAGATTTTGTCGTCAAAGAAACTGATAAATTGACAAAGATTAAGTTTTCAGCTAGGCAAATCGATTGCACCCACATAAAAGGGGGTCTCTCTTTTGATTCTGTCATGATTTTACCCAAGAGTATAGCCAGTAAAGCTAGATAATTTTTGTAGATATATGTTAAATAGTGAGTGTGTCATAGAAAAAAAAACAGAATAGTTTTCAGGTTGGTTTGCATAAGGGCTTTTCCATGTACATATTTTTTTTTTACTAGGGGGAGCTTGGCATTGTTAGCCCATAGTTGTTCTGTTCTGAAGATCGCGCAATCTTATATATTTAGCCTTTAGCAGAAGGCAGTTCTATAAGTGATCTAGGAATTTAGAAGGCAGTACGATGTTTTTTTCAGGTTTGGTTTTTTGAAAGTTTTGTGTATTAAAATTGTTTAATTAGATGATGTTTGCTTTTGAGAATGGGTTAAGGATTTCAGAATAAAAATTAAACAATT ATGGGCGTCGGAATGTCATCAACCGACGGCGGAAATCACGGCGGAGAAACGCCGGAATATCGTCGTAAACTAGAAGATATACCGGAAAGTTGTATAGCTATGGTATTAGGCCACCTTGACCCGCCGGAGATTTGCCGTTTGGCTCGGCTTAATCGGGCCTTTCGCGGTGCTTCCTCCGCTGATTTCATATGGGAGACAAAACTTCCTACGAATTATTCGTTCATTGTTAATAAGATTTCTGAATTGAATCATAAGAATGATGATGATATGAAGAATTACGGTGGTAGTAAAGATATATCCACGGGTTTAAATAAAAAAGATATTTTTGCCCGCCTTTCTCGCCACAACCTTTTCGATTCCGGCAATAAGGAAATATGGTTGGACAAGAAAACTGGAGGTGTATGTGTGTCAATATCATCAAAGGCACTGTCAATTACTGGTATTGATGACAGGCGATACTGGAATCACATTCCCACTGAGGAATCTAGATTCCAGACAGTTGCATATCTTCTTCAGATATGGTGGTTTGAAGTTTGTGGGGAACTGGAGTTCAAATTCCCAGCAGGAACATATAGCCTCTTCTTCAGAATCCAGCTTGGCAAGTCTTCTAAGAGGTTTGGTCGTCGTTCATGTAATGTGGAGCATATACATGGGTGGAACCTAAGACCAGTACGATTCCAGCTGACAACATCAGACGGTCAGCATGCTTCGTCAGAGTGTTATTTGGATAGTCCTGGATCATGGATCCTCTACCACGGAGGAGATTTTGTCGTCAAAGAAACTGATAAATTGACAAAGATTAAGTTTTCAGCTAGGCAAATCGATTGCACCCACATAAAAGGGGGTCTCTCTTTTGATTCTGTCATGATTTTACCCAAGAGTATAGCCAGTAAAGCTAGATAA MGVGMSSTDGGNHGGETPEYRRKLEDIPESCIAMVLGHLDPPEICRLARLNRAFRGASSADFIWETKLPTNYSFIVNKISELNHKNDDDMKNYGGSKDISTGLNKKDIFARLSRHNLFDSGNKEIWLDKKTGGVCVSISSKALSITGIDDRRYWNHIPTEESRFQTVAYLLQIWWFEVCGELEFKFPAGTYSLFFRIQLGKSSKRFGRRSCNVEHIHGWNLRPVRFQLTTSDGQHASSECYLDSPGSWILYHGGDFVVKETDKLTKIKFSARQIDCTHIKGGLSFDSVMILPKSIASKAR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06680.1 vs. NCBI nr
Match: gi|902198556|gb|KNA13704.1| (hypothetical protein SOVF_114370 isoform A [Spinacia oleracea]) HSP 1 Score: 632.1 bits (1629), Expect = 5.000e-178 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
BLAST of Spo06680.1 vs. NCBI nr
Match: gi|902198557|gb|KNA13705.1| (hypothetical protein SOVF_114370 isoform B [Spinacia oleracea]) HSP 1 Score: 626.3 bits (1614), Expect = 2.700e-176 Identity = 300/304 (98.68%), Postives = 300/304 (98.68%), Query Frame = 1
BLAST of Spo06680.1 vs. NCBI nr
Match: gi|731361485|ref|XP_010692379.1| (PREDICTED: F-box protein PP2-A13 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 529.3 bits (1362), Expect = 4.500e-147 Identity = 256/304 (84.21%), Postives = 271/304 (89.14%), Query Frame = 1
BLAST of Spo06680.1 vs. NCBI nr
Match: gi|225453740|ref|XP_002269833.1| (PREDICTED: F-box protein PP2-A13 [Vitis vinifera]) HSP 1 Score: 408.7 bits (1049), Expect = 8.900e-111 Identity = 190/300 (63.33%), Postives = 226/300 (75.33%), Query Frame = 1
BLAST of Spo06680.1 vs. NCBI nr
Match: gi|566203039|ref|XP_002320090.2| (F-box family protein [Populus trichocarpa]) HSP 1 Score: 404.1 bits (1037), Expect = 2.200e-109 Identity = 186/298 (62.42%), Postives = 221/298 (74.16%), Query Frame = 1
BLAST of Spo06680.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R442_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114370 PE=4 SV=1) HSP 1 Score: 632.1 bits (1629), Expect = 3.500e-178 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1
BLAST of Spo06680.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2H4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114370 PE=4 SV=1) HSP 1 Score: 626.3 bits (1614), Expect = 1.900e-176 Identity = 300/304 (98.68%), Postives = 300/304 (98.68%), Query Frame = 1
BLAST of Spo06680.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFQ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g020160 PE=4 SV=1) HSP 1 Score: 529.3 bits (1362), Expect = 3.100e-147 Identity = 256/304 (84.21%), Postives = 271/304 (89.14%), Query Frame = 1
BLAST of Spo06680.1 vs. UniProtKB/TrEMBL
Match: D7U7J3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g01930 PE=4 SV=1) HSP 1 Score: 408.7 bits (1049), Expect = 6.200e-111 Identity = 190/300 (63.33%), Postives = 226/300 (75.33%), Query Frame = 1
BLAST of Spo06680.1 vs. UniProtKB/TrEMBL
Match: B9IC61_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0014s07190g PE=4 SV=2) HSP 1 Score: 404.1 bits (1037), Expect = 1.500e-109 Identity = 186/298 (62.42%), Postives = 221/298 (74.16%), Query Frame = 1
BLAST of Spo06680.1 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 8.900e-103 Identity = 181/299 (60.54%), Postives = 217/299 (72.58%), Query Frame = 1
BLAST of Spo06680.1 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 6.800e-95 Identity = 160/272 (58.82%), Postives = 205/272 (75.37%), Query Frame = 1
BLAST of Spo06680.1 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 1.900e-92 Identity = 157/272 (57.72%), Postives = 198/272 (72.79%), Query Frame = 1
BLAST of Spo06680.1 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 9.300e-84 Identity = 140/269 (52.04%), Postives = 191/269 (71.00%), Query Frame = 1
BLAST of Spo06680.1 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 1.100e-81 Identity = 155/303 (51.16%), Postives = 196/303 (64.69%), Query Frame = 1
BLAST of Spo06680.1 vs. TAIR (Arabidopsis)
Match: AT3G61060.2 (phloem protein 2-A13) HSP 1 Score: 370.2 bits (949), Expect = 1.200e-102 Identity = 181/300 (60.33%), Postives = 217/300 (72.33%), Query Frame = 1
BLAST of Spo06680.1 vs. TAIR (Arabidopsis)
Match: AT1G12710.1 (phloem protein 2-A12) HSP 1 Score: 348.6 bits (893), Expect = 3.900e-96 Identity = 160/272 (58.82%), Postives = 205/272 (75.37%), Query Frame = 1
BLAST of Spo06680.1 vs. TAIR (Arabidopsis)
Match: AT1G63090.1 (phloem protein 2-A11) HSP 1 Score: 340.5 bits (872), Expect = 1.100e-93 Identity = 157/272 (57.72%), Postives = 198/272 (72.79%), Query Frame = 1
BLAST of Spo06680.1 vs. TAIR (Arabidopsis)
Match: AT5G52120.1 (phloem protein 2-A14) HSP 1 Score: 311.6 bits (797), Expect = 5.200e-85 Identity = 140/269 (52.04%), Postives = 191/269 (71.00%), Query Frame = 1
BLAST of Spo06680.1 vs. TAIR (Arabidopsis)
Match: AT3G53000.1 (phloem protein 2-A15) HSP 1 Score: 304.7 bits (779), Expect = 6.400e-83 Identity = 155/303 (51.16%), Postives = 196/303 (64.69%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06680.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06680.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06680.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo06680.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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