Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAATCACTTATTCCCTTAATTTTATTTTATTTTATTTTATTTATTGAAAAGAAAGTACCTCTCTCTTTCTCTTTCTCACTCCTCTATACATACCCTTCATTTCCCTCTCTTTTTTCCTACATTTATCTCTAGCTACTCTTACCTTATCTCCTCCCAAAAAAATGGCAACAAAAAATGGAAAAATGCTAAAAGATTTCTTACAAGATGTTAGCAATAGTAATTCTTCGAGCGGATTCGAAATCACGGCCGGGAATCTTCCTAGGAGTCGCAGCCGATCACGAGTTGCCGCCGAAGCGGCATTTACTTCATTCCAGAAGCTTCTTCAAGCTGTTAAGAGCTTCCATTATTCCTCCACTCCGTCAACGTTGCAAACGAGTGTTTCTAGAAGGTTGTTAGGAAGGTTGAAGAAATCAAATAAATTATCCGATGAGGTGAGGAGTAGTAAGATTGTTGTGGTCACGGTCAAAGTCAAAGATATCTTACGGTGGAAATCGTTTCGGGACTTGGTTGTTGATGATCGTCAAATCTCCGCGGAGGAAGAGGAGAAGGAATCTCAGCCGTTGGATTTCGTGGGCCCCGCCAACGACGCTCCTTCCACTAATGATAGTAGTAGTAATAATTTCAATTTTACTGTTACCGAGGAGGAGTTACCGTGCTGTTTAGGTGATTCCGATGATGATGAGGGTAAATTATCGGACGTCGACGACGGCGACGTTGTTGTTACATCGGATTCTGAAGTGGGACCCAATGAGGTAACGACTTTTATTCACTTTTTTTTTCCTTTTATCTTTTGTTGTTGAAAGAAAAATTCATGAAATATGGTTGAAAAATGACAAATTTGGAGGTGTCCACTTTTAATTATGTGCACATGTTGTGTTTTACTTTTGATTTTTGCCAATTATGTACTTGGTAGTTGGCAGTTTTAGAATGTGGTCTTTTTTGAGTAGTGTTTGTTTTATACTCCTAAAAAGTAAAAATCGTAAATTTATACGGAGTACATCTATATAAGCCGAGTAACTGACTTACGGAGTATGTTTTTAAAAAAGAAAAAGGAAATGGCTCATTAGTATATGATAATCTAATTGATCCATATTTCTACTATTCGGGTCATCGTTCGAGACACTAACTAGTTTATTATTATAAACCCATGAATTAGAACTTTGGAAGGAAGAAGTATCTTTTCGATGACTAACATGTTAACCATTTACTTACCCGATATCATTATACGGAGTAGTTAACACTCAGAAAGTTCACTCATAAAACTAATGTGGATTACTAATATTTGTGCACATATTTCTAATTTTATGTAATTGTGGTCTAGGTGACAAAAGGCTTTTCGTATTTTATTTTTCTTTATTCCAATAGCAATGGGCCATACTCAAAGTCTCGAAGTATACTTGAAACATAACCTTATCTTACCAAAATCAAATTCAAAATTGAATTTACCTCACCAAAAATCAATTAAAATAGACAAATTTTCTATATACTTATTTAAAGCTAATTAAAAATTCGAAAATAATCCGACCAGATTATGACTTTGAACCATTTAAGTGCATGAGTCATGAGTTATCACTTGACTAGGACACGAACCCACCAAAATGATATTGGATGTAATGGAGAAGGTGACATTAGCCAAGTTGAATACTTACAAAATAAAATAAAGGGTGATGATAAAGGTCGCAAGTTGCGACAACATTTAGTTGTCGCAATCTTACGTGTCAGAGTTTAATTGGTACATATATGCGCCACGTAGGCTATAAGTCATCATAATATTCTTAATATCAATGCAAAATTTTTACTATGAAAATATGTAAATAAGATAATCGATATAAAGAAAGAAACAAATTAGAATATTAAGATTTTCCTACCTTTATTTTAAACATGTACAATAGAATATATAAGTAAAATATTTTAGATTCCAATTTAAGTCATGACACATAAGCATGCCATGTCATCATTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGTTAAATAAAAAAGGACAAAAAATGAATTTAGATTAATAAAATTGATTTGTTAGAAGGTCAAGGAGTGCAGGTGTCTGGTAGTTGACGGTATGGGGAGCCTTAGACAGTAACATGAGGAAATAGAATGGGTCATCTTTGTCTTTTTGTTTTGGATTAGCGCGTTTGGTTAGTTGACCTCATGGCCGACCTGTTTCGGATTATTCTTCTTAATTCTTATGGACACCCCTAACATGTTGCATTTGCATATCATATGTGTTGTATTCCATCCCTAATCATACAATCATTTCTAATTAATACGGAATATTTAAGGGACAAGAGTTATCACGTACTCCGTAATAAACTTTAGTATGTTTTGCGTGTGATTTTGTCATAGATAATGAATTTTGTACAAATATTTTTAATACTATACGTTTTACGAAAGGAGTATGTTGCTTATCCATAAGACCAAAACGGTTAGCATGTTTGTTGACCCAAAAGTTTAAAATGCATTTTTTCGGGTCAGGCCGGAACACGGTGGCCCGAATCGTGCCTTGTAATATCTCAATGCTTATTGCAATCTCTTTGACATTGCAGGAGAAGCATAACTTTGGAAGTGAAGAAGACATAACAGAGCAACAAAGTCCAGTTTCAGTGCTTAATTCTCCATTTAGAGATGAAGTCTCTGATGAAGAGATCCCCACATCTTTCGAACAGAAAATGGCTAATATGGAAAGTAAGCACTCCAATATTCTAACTAACTACTACCCCCTTTCATAATGATCTTTACCCCTTTTATTTTAGTTGTTTCATTAAGTTTTTAAATTTTACTTTATGAATTACTGTTATTCTTGGATATGAAATTGTATCATTTTATCCTTTACCGCCACAAAATTTATATATTTCCACTTAATTTCTCTTATTTTATTCATTTTTTTTTGACATTCCTCCGCCTTTTTACACTCTCGTACTTTATCTATATTTTATTATATCATCCTCCCTCTTTTGTATTAATATTTGTGCAAATAGAAACGGTAAATATCATTATGAAACCGATGTAATTCATGTCTTTCCCGGTCATAGTATTGTTTACATTTTAACCTAATAGTGTAATAGCGAAAACTCATTAATGGATCAATGATTACAGGAACAAAACAAAGGCTCCTCCAAAGCATCCAATGGTTCGAGAACTTGGCCGGGGTTCGAGAAGACGACGATGAATCAATAGACGAGGATGAACAAGAAGAAGATGATTACGAGCAACAAAAGGCAGCCAATGATGCAAGCGAAGCTAAGCGGAAAGCTTACTCGAGTAGAGGATTTTGTTGGTTTAAAAGGGGGAAACAAAGTTTAGAGGATAAAGAAGAGTGTGTTAGAGGCATGGAGAAGTTAGGACAATGGAACAAGTTTGAGGAAGAGAGAACAGAGTTAGGAGTGGAATTGGAGGTTGAAATGTTAAGTGATTTGTTAGATGAGGTTTTAATTGATTTTGATGGATGAGTTGTTAATCAACAAATAAAGTGTGTTACGATCTATGTTACCCAGACTAGGATATCTATATCGGACATGAGTGCGTGTTCACATGTATACGACTATATTGTGAAAAAGTGCACGATTTTGGTCTAAAATGAAGTGTCCAAGTGTCCATATTCATGTCCGAGTGTCGAAAAACCAGCACGAATATTTGAGGTAAAGTGAAAAGTTCGGGTAACATAACTTACGATCAATTAGTTTGACTATTACTTGTACATTTAAAGGGAGGAAAAAGAAGAGGATATGCCTTTTTGTGACCAATTTCTTAATTAGTTTACTAGTTAGCTAGTAGCCTAGTATGCATATAACTAGCCAACTAGGGCTTTGTATCTATATGATGATATCTAAGGTTAAAAGAGCTTTTTTTGAGTGGAAAATATACATCAATTTCATTCATAATTCTGTGTTATCATTACACTTTGTAATCTATTTTCTTCCACACGTAATTGGTTCCATTATTTTATATTCCCTTTATATTTATTTAAGAGATACACTTGGC CTTAAATCACTTATTCCCTTAATTTTATTTTATTTTATTTTATTTATTGAAAAGAAAGTACCTCTCTCTTTCTCTTTCTCACTCCTCTATACATACCCTTCATTTCCCTCTCTTTTTTCCTACATTTATCTCTAGCTACTCTTACCTTATCTCCTCCCAAAAAAATGGCAACAAAAAATGGAAAAATGCTAAAAGATTTCTTACAAGATGTTAGCAATAGTAATTCTTCGAGCGGATTCGAAATCACGGCCGGGAATCTTCCTAGGAGTCGCAGCCGATCACGAGTTGCCGCCGAAGCGGCATTTACTTCATTCCAGAAGCTTCTTCAAGCTGTTAAGAGCTTCCATTATTCCTCCACTCCGTCAACGTTGCAAACGAGTGTTTCTAGAAGGTTGTTAGGAAGGTTGAAGAAATCAAATAAATTATCCGATGAGGTGAGGAGTAGTAAGATTGTTGTGGTCACGGTCAAAGTCAAAGATATCTTACGGTGGAAATCGTTTCGGGACTTGGTTGTTGATGATCGTCAAATCTCCGCGGAGGAAGAGGAGAAGGAATCTCAGCCGTTGGATTTCGTGGGCCCCGCCAACGACGCTCCTTCCACTAATGATAGTAGTAGTAATAATTTCAATTTTACTGTTACCGAGGAGGAGTTACCGTGCTGTTTAGGTGATTCCGATGATGATGAGGGTAAATTATCGGACGTCGACGACGGCGACGTTGTTGTTACATCGGATTCTGAAGTGGGACCCAATGAGGAGAAGCATAACTTTGGAAGTGAAGAAGACATAACAGAGCAACAAAGTCCAGTTTCAGTGCTTAATTCTCCATTTAGAGATGAAGTCTCTGATGAAGAGATCCCCACATCTTTCGAACAGAAAATGGCTAATATGGAAAGAACAAAACAAAGGCTCCTCCAAAGCATCCAATGGTTCGAGAACTTGGCCGGGGTTCGAGAAGACGACGATGAATCAATAGACGAGGATGAACAAGAAGAAGATGATTACGAGCAACAAAAGGCAGCCAATGATGCAAGCGAAGCTAAGCGGAAAGCTTACTCGAGTAGAGGATTTTGTTGGTTTAAAAGGGGGAAACAAAGTTTAGAGGATAAAGAAGAGTGTGTTAGAGGCATGGAGAAGTTAGGACAATGGAACAAGTTTGAGGAAGAGAGAACAGAGTTAGGAGTGGAATTGGAGGTTGAAATGTTAAGTGATTTGTTAGATGAGGTTTTAATTGATTTTGATGGATGAGTTGTTAATCAACAAATAAAGTGTGTTACGATCTATGTTACCCAGACTAGGATATCTATATCGGACATGAGTGCGTGTTCACATGTATACGACTATATTGTGAAAAAGTGCACGATTTTGGTCTAAAATGAAGTGTCCAAGTGTCCATATTCATGTCCGAGTGTCGAAAAACCAGCACGAATATTTGAGGTAAAGTGAAAAGTTCGGGTAACATAACTTACGATCAATTAGTTTGACTATTACTTGTACATTTAAAGGGAGGAAAAAGAAGAGGATATGCCTTTTTGTGACCAATTTCTTAATTAGTTTACTAGTTAGCTAGTAGCCTAGTATGCATATAACTAGCCAACTAGGGCTTTGTATCTATATGATGATATCTAAGGTTAAAAGAGCTTTTTTTGAGTGGAAAATATACATCAATTTCATTCATAATTCTGTGTTATCATTACACTTTGTAATCTATTTTCTTCCACACGTAATTGGTTCCATTATTTTATATTCCCTTTATATTTATTTAAGAGATACACTTGGC ATGGCAACAAAAAATGGAAAAATGCTAAAAGATTTCTTACAAGATGTTAGCAATAGTAATTCTTCGAGCGGATTCGAAATCACGGCCGGGAATCTTCCTAGGAGTCGCAGCCGATCACGAGTTGCCGCCGAAGCGGCATTTACTTCATTCCAGAAGCTTCTTCAAGCTGTTAAGAGCTTCCATTATTCCTCCACTCCGTCAACGTTGCAAACGAGTGTTTCTAGAAGGTTGTTAGGAAGGTTGAAGAAATCAAATAAATTATCCGATGAGGTGAGGAGTAGTAAGATTGTTGTGGTCACGGTCAAAGTCAAAGATATCTTACGGTGGAAATCGTTTCGGGACTTGGTTGTTGATGATCGTCAAATCTCCGCGGAGGAAGAGGAGAAGGAATCTCAGCCGTTGGATTTCGTGGGCCCCGCCAACGACGCTCCTTCCACTAATGATAGTAGTAGTAATAATTTCAATTTTACTGTTACCGAGGAGGAGTTACCGTGCTGTTTAGGTGATTCCGATGATGATGAGGGTAAATTATCGGACGTCGACGACGGCGACGTTGTTGTTACATCGGATTCTGAAGTGGGACCCAATGAGGAGAAGCATAACTTTGGAAGTGAAGAAGACATAACAGAGCAACAAAGTCCAGTTTCAGTGCTTAATTCTCCATTTAGAGATGAAGTCTCTGATGAAGAGATCCCCACATCTTTCGAACAGAAAATGGCTAATATGGAAAGAACAAAACAAAGGCTCCTCCAAAGCATCCAATGGTTCGAGAACTTGGCCGGGGTTCGAGAAGACGACGATGAATCAATAGACGAGGATGAACAAGAAGAAGATGATTACGAGCAACAAAAGGCAGCCAATGATGCAAGCGAAGCTAAGCGGAAAGCTTACTCGAGTAGAGGATTTTGTTGGTTTAAAAGGGGGAAACAAAGTTTAGAGGATAAAGAAGAGTGTGTTAGAGGCATGGAGAAGTTAGGACAATGGAACAAGTTTGAGGAAGAGAGAACAGAGTTAGGAGTGGAATTGGAGGTTGAAATGTTAAGTGATTTGTTAGATGAGGTTTTAATTGATTTTGATGGATGA MATKNGKMLKDFLQDVSNSNSSSGFEITAGNLPRSRSRSRVAAEAAFTSFQKLLQAVKSFHYSSTPSTLQTSVSRRLLGRLKKSNKLSDEVRSSKIVVVTVKVKDILRWKSFRDLVVDDRQISAEEEEKESQPLDFVGPANDAPSTNDSSSNNFNFTVTEEELPCCLGDSDDDEGKLSDVDDGDVVVTSDSEVGPNEEKHNFGSEEDITEQQSPVSVLNSPFRDEVSDEEIPTSFEQKMANMERTKQRLLQSIQWFENLAGVREDDDESIDEDEQEEDDYEQQKAANDASEAKRKAYSSRGFCWFKRGKQSLEDKEECVRGMEKLGQWNKFEEERTELGVELEVEMLSDLLDEVLIDFDG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06674.1 vs. NCBI nr
Match: gi|902209930|gb|KNA16306.1| (hypothetical protein SOVF_090360 [Spinacia oleracea]) HSP 1 Score: 673.7 bits (1737), Expect = 1.800e-190 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 1
BLAST of Spo06674.1 vs. NCBI nr
Match: gi|731361421|ref|XP_010692345.1| (PREDICTED: uncharacterized protein LOC104905485 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 318.9 bits (816), Expect = 1.100e-83 Identity = 214/408 (52.45%), Postives = 266/408 (65.20%), Query Frame = 1
BLAST of Spo06674.1 vs. NCBI nr
Match: gi|870847831|gb|KMT00179.1| (hypothetical protein BVRB_1g019970 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 316.2 bits (809), Expect = 7.200e-83 Identity = 212/404 (52.48%), Postives = 264/404 (65.35%), Query Frame = 1
BLAST of Spo06674.1 vs. NCBI nr
Match: gi|731361419|ref|XP_010692344.1| (PREDICTED: uncharacterized protein LOC104905485 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 315.8 bits (808), Expect = 9.400e-83 Identity = 211/408 (51.72%), Postives = 267/408 (65.44%), Query Frame = 1
BLAST of Spo06674.1 vs. NCBI nr
Match: gi|697145697|ref|XP_009626985.1| (PREDICTED: uncharacterized protein LOC104117616 [Nicotiana tomentosiformis]) HSP 1 Score: 106.3 bits (264), Expect = 1.100e-19 Identity = 134/416 (32.21%), Postives = 192/416 (46.15%), Query Frame = 1
BLAST of Spo06674.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9X1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_090360 PE=4 SV=1) HSP 1 Score: 673.7 bits (1737), Expect = 1.200e-190 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 1
BLAST of Spo06674.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJD5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g019970 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 5.000e-83 Identity = 212/404 (52.48%), Postives = 264/404 (65.35%), Query Frame = 1
BLAST of Spo06674.1 vs. UniProtKB/TrEMBL
Match: A0A061E1G2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_005434 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.500e-15 Identity = 119/347 (34.29%), Postives = 175/347 (50.43%), Query Frame = 1
BLAST of Spo06674.1 vs. UniProtKB/TrEMBL
Match: K4AZC3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 3.400e-15 Identity = 123/412 (29.85%), Postives = 190/412 (46.12%), Query Frame = 1
BLAST of Spo06674.1 vs. UniProtKB/TrEMBL
Match: A0A061DUN2_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_005434 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 5.900e-15 Identity = 115/347 (33.14%), Postives = 175/347 (50.43%), Query Frame = 1
BLAST of Spo06674.1 vs. TAIR (Arabidopsis)
Match: AT4G00770.1 (unknown protein) HSP 1 Score: 72.0 bits (175), Expect = 8.400e-13 Identity = 96/330 (29.09%), Postives = 152/330 (46.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06674.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06674.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06674.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo06674.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
Co-expression
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