Spo06567 (gene)

Overview
NameSpo06567
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionProtein Ycf2
LocationSuper_scaffold_74 : 122710 .. 124076 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTCTCGGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACGTTGAGTTTGGAACCCTTTTTTCCATTTTTTTTTCAATCTATAAATTGTTAATGAATACGCGGCAGAACCACTTCATTTTTCAATTAAGTGATATTATTTCGATTTCAAGATGAAAGAACTCACTTTCTACCAAAATAGAAAATATTTTAAAAAATTGCGCCGAAACACTTATGATATTAGAACTCATGCCCTATCGAGCATGTTATCCCATTTTTAAATTGATTTATTCTGCAGCAGCAAATGCTAGTCAAGACGTTCCTTTCCCCCCCCACATGGATAAAAGTAGACCCACAGTAACAATAAAGAGTGGACTAAACTATTAGCAGGAGTAGAAACTGATGCGGTTAAGAAATTGCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATGCAGTTCCAAAAAAGCGTACTTTGATTTACAAAAAACGTAGGTCCTTCACTTTCATTACACCGATGTGGATTGCCTCGGGCCAAATAATTCTATCGGGGTAGTTGCGGAACCTGAAGCCCAATTCTTAACTGGAGGAGACACCAAAGTCCGCCGCCCTTCCATCTCTTGGATAGAGATAGATAGAGAGGTGACTCGATATCTATGTCTGTTGACAAAGCCCGAAGAGTAATTGATCAGATCCGTGGGCGTTCCTACGCCGAAACACTTATGATATTAGAACTCATGCCCTATCGAGCATGTTATCCCATTTTTAAATTGATTTATTCTGCAGCAGCAAATGCTAGTCATAATAAACAATTTAATAAAGCCAGGTAAATCCATTATATGTCAAATAAGAGATAAAAAATCGGAATGTTTCATGATCTTATTGATTTGAACAGGAAAAAAGAAGTTTATGCTTTGCTAATTGTTAAATCCTAAAGCTTGTGGTAAGAATGGGTTTCATTCTAGTGCCCTAAAATAATATTCTAAAGCTTTCGTATGTTCTCCATTACTTGTGTGAACCAAACACATCGTAAGCTAAACCTGTGTTGATTTATAACCAACCCGCAATGAATAGGGAAGGTATAGTAATGCTATGAATAACCCATGGGAATTGTTTGATTGTCTTTCTCTTTTTTTGAGGAACGTATCGAGAGAGAATTGGATTTGGCTAGACAATGTGCGGTTGGTAAATAAGGAACGGGTTTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATATGATAGCATGATATTGGGGAATCTCATTGCTATTAATTGA

mRNA sequence

ATGCACTTCTCGGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCCAGCAAATGCTAGTCATAATAAACAATTTAATAAAGCCAGGAACGTATCGAGAGAGAATTGGATTTGGCTAGACAATGTGCGGTTGGTAAATAAGGAACGGGTTTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATATGATAGCATGATATTGGGGAATCTCATTGCTATTAATTGA

Coding sequence (CDS)

ATGCACTTCTCGGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCCAGCAAATGCTAGTCATAATAAACAATTTAATAAAGCCAGGAACGTATCGAGAGAGAATTGGATTTGGCTAGACAATGTGCGGTTGGTAAATAAGGAACGGGTTTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATATGATAGCATGATATTGGGGAATCTCATTGCTATTAATTGA

Protein sequence

MHFSAANPLEREGCLRERGHRWCMAVVSSCPANASHNKQFNKARNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDSMILGNLIAIN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06567.1Spo06567.1mRNA


Homology
[Close]
BLAST of Spo06567.1 vs. NCBI nr
Match: gi|12246|emb|CAA30743.1| (unnamed protein product [Spinacia oleracea])

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYD 80
           RNVSRENWIWLDNVRLVNK+R FSKVRNVSSNIQYD
Sbjct: 244 RNVSRENWIWLDNVRLVNKDRFFSKVRNVSSNIQYD 279
[Close]
BLAST of Spo06567.1 vs. NCBI nr
Match: gi|11497598|ref|NP_055004.1| (Ycf2 [Spinacia oleracea])

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYD 80
           RNVSRENWIWLDNVRLVNK+R FSKVRNVSSNIQYD
Sbjct: 244 RNVSRENWIWLDNVRLVNKDRFFSKVRNVSSNIQYD 279
[Close]
BLAST of Spo06567.1 vs. NCBI nr
Match: gi|340842530|gb|AEK78183.1| (hypothetical chloroplast RF2 (plastid) [Gisekia africana])

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYD 80
           RNVSRENWIWLDNVRLVNK+R FSKVRNVSSNIQYD
Sbjct: 343 RNVSRENWIWLDNVRLVNKDRFFSKVRNVSSNIQYD 378
[Close]
BLAST of Spo06567.1 vs. NCBI nr
Match: gi|146261228|gb|ABQ14849.1| (Ycf2 [Itea virginica])

HSP 1 Score: 72.4 bits (176), Expect = 4.500e-10
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 1 

		  

Query: 33  NASHNKQFNKARNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           N +H   F   RNVSRENWIWLDNV LVNK+R FSKV+NVSSNIQYDS
Sbjct: 334 NNTHESDF--LRNVSRENWIWLDNVWLVNKDRFFSKVQNVSSNIQYDS 379
[Close]
BLAST of Spo06567.1 vs. NCBI nr
Match: gi|836613973|ref|YP_009143766.1| (ycf2 protein (chloroplast) [Salicornia europaea])

HSP 1 Score: 72.4 bits (176), Expect = 4.500e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDSM 82
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS+
Sbjct: 244 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSI 281
[Close]
BLAST of Spo06567.1 vs. UniProtKB/TrEMBL
Match: G0YEC4_9CARY (Protein Ycf2 OS=Gisekia africana GN=ycf2 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-10
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYD 80
           RNVSRENWIWLDNVRLVNK+R FSKVRNVSSNIQYD
Sbjct: 343 RNVSRENWIWLDNVRLVNKDRFFSKVRNVSSNIQYD 378
[Close]
BLAST of Spo06567.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXF3_SALEU (Protein Ycf2 OS=Salicornia europaea GN=ycf2 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDSM 82
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS+
Sbjct: 244 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSI 281
[Close]
BLAST of Spo06567.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QY28_9CARY (Protein Ycf2 OS=Salicornia brachiata GN=ycf2 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDSM 82
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS+
Sbjct: 244 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSI 281
[Close]
BLAST of Spo06567.1 vs. UniProtKB/TrEMBL
Match: A0A159ZSF5_9CARY (Ycf2 OS=Bienertia sinuspersici GN=ycf2 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDSM 82
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS+
Sbjct: 244 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSI 281
[Close]
BLAST of Spo06567.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QY66_SALBI (Protein Ycf2 OS=Salicornia bigelovii GN=ycf2 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDSM 82
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS+
Sbjct: 244 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSI 281
[Close]
BLAST of Spo06567.1 vs. ExPASy Swiss-Prot
Match: YCF2_SPIOL (Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYD 80
           RNVSRENWIWLDNVRLVNK+R FSKVRNVSSNIQYD
Sbjct: 244 RNVSRENWIWLDNVRLVNKDRFFSKVRNVSSNIQYD 279
[Close]
BLAST of Spo06567.1 vs. ExPASy Swiss-Prot
Match: YCF2_VITVI (Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS
Sbjct: 343 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDS 379
[Close]
BLAST of Spo06567.1 vs. ExPASy Swiss-Prot
Match: YCF2_PLAOC (Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           RNVSRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS
Sbjct: 343 RNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDS 379
[Close]
BLAST of Spo06567.1 vs. ExPASy Swiss-Prot
Match: YCF2_RANMC (Protein Ycf2 OS=Ranunculus macranthus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-12
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           RNVSRENWIWLD+VRLVNK+R FSKVRNVSSN+QYDS
Sbjct: 343 RNVSRENWIWLDSVRLVNKDRFFSKVRNVSSNMQYDS 379
[Close]
BLAST of Spo06567.1 vs. ExPASy Swiss-Prot
Match: YCF2_EUCGG (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.800e-12
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           RN+SRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS
Sbjct: 343 RNISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDS 379
[Close]
BLAST of Spo06567.1 vs. TAIR (Arabidopsis)
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           R +SRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS
Sbjct: 343 RKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDS 379
[Close]
BLAST of Spo06567.1 vs. TAIR (Arabidopsis)
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

		  

Query: 44  RNVSRENWIWLDNVRLVNKERVFSKVRNVSSNIQYDS 81
           R +SRENWIWLDNV LVNK+R FSKVRNVSSNIQYDS
Sbjct: 343 RKISRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDS 379
The following BLAST results are available for this feature:
BLAST of Spo06567.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|12246|emb|CAA30743.1|2.0e-1094.4unnamed protein product [Spina... [more]
gi|11497598|ref|NP_055004.1|2.0e-1094.4Ycf2 [Spinacia oleracea][more]
gi|340842530|gb|AEK78183.1|2.0e-1094.4hypothetical chloroplast RF2 (... [more]
gi|146261228|gb|ABQ14849.1|4.5e-1075.0Ycf2 [Itea virginica][more]
gi|836613973|ref|YP_009143766.1|4.5e-1089.4ycf2 protein (chloroplast) [Sa... [more]
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BLAST of Spo06567.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G0YEC4_9CARY1.4e-1094.4Protein Ycf2 OS=Gisekia africa... [more]
A0A0G2QXF3_SALEU3.2e-1089.4Protein Ycf2 OS=Salicornia eur... [more]
A0A0G2QY28_9CARY3.2e-1089.4Protein Ycf2 OS=Salicornia bra... [more]
A0A159ZSF5_9CARY3.2e-1089.4Ycf2 OS=Bienertia sinuspersici... [more]
A0A0G2QY66_SALBI3.2e-1089.4Protein Ycf2 OS=Salicornia big... [more]
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BLAST of Spo06567.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YCF2_SPIOL1.3e-1294.4Protein Ycf2 OS=Spinacia olera... [more]
YCF2_VITVI3.7e-1291.8Protein Ycf2 OS=Vitis vinifera... [more]
YCF2_PLAOC3.7e-1291.8Protein Ycf2 OS=Platanus occid... [more]
YCF2_RANMC3.7e-1289.1Protein Ycf2 OS=Ranunculus mac... [more]
YCF2_EUCGG4.8e-1289.1Protein Ycf2 OS=Eucalyptus glo... [more]
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BLAST of Spo06567.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00860.11.4e-1286.4Chloroplast Ycf2;ATPase, AAA t... [more]
ATCG01280.11.4e-1286.4Chloroplast Ycf2;ATPase, AAA t... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 34..81
score: 7.6
NoneNo IPR availablePANTHERPTHR33078FAMILY NOT NAMEDcoord: 44..81
score: 2.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
RNA-Seq Expression