Spo06403 (gene)

Overview
NameSpo06403
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSignal recognition particle 19 kDa protein
LocationSpoScf_03881 : 6276 .. 8125 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGCTCCTGATAAATGTTGATCAAGTGTTTAAGGTACGTTTCCTTGTTTTTTCATCTAATGTTCTTTTCGGATTGTTATGTTCTTTTTCACAACTTTATTTTTACTGTGTCATCAACATAGTTTGTTCTTTTATATCAACGTACATAGATTGTTAAAAAAGAACATATAATGGTTTGAAAAGAACAAATAACACTTAAAAAAGAACATAGTCTGATTCGTGGTAAAAGAACAAATATACTTTTTTTTAAAAATATAGATTTAGTTTTAAGTGCATCAAAAAATCGTCGTTTTGTCTTTTTAATTAGAACATAAAATCGTTTGAATAGAACAAATAACACTTAATAAAAGAACATAGATCTTATGTGTGGGATAAAAACAAAAATACATTTAAATAAAAATATAGATCTAGTTTTAAGTGCATCAAAGTATCGTCGTTTTCGTCTTTTTAATTAGAACACTAATTGGTTTGATAAGAACAAATACAACTAATAAAAGAACATAGATTTGTTGTTCTTTTCGTCCCTTTCATTCTGTTCTTTTGTTTGATAAGGAAAAAGAAAATGATGTTCTTTTTTCATGTGTTCTGTTCTTTTTTCTTATTTTATTGTGTTTTTTTTTTTGAGTTTTTGTTATTTTATTTTTCTTCTAATTTTGTTCTTTGTGTTTTGTAAAAAAGTTGTTGTTCTTTTTTATAATTATTTTGTGTTCTTTTTAATTTTTTTACAGTTTTTTAATATTTAATAATATTATCGATAATATGTATTTTTTTTTTGTTTTTCTATTGCATTTTTCACACGATGTTCTTTTTGAAAAATAGTTGTTCTTTTTATAGTTATCAGGAGAGAGAATATGTTATTTTTATTTTTGTACATTTTCTTTAGTTTTTTGACATTAGTGTTCTTTTCAGGTTTAGTTAATGTTCTTTTTGTTTACTCTAGTTCTTTCTGTTTAGTTTTTTATGTTCTTTTTCGTTTTTTTGTTTTTTGCGTTTTCTTTTAATGTTTTTGCGTTTTGGTGCAGGTGCACGTAGATCTACGTGCAGGCCCCTGCACCATCCACGCGTTGGTATTTGGTTCAAACTTAGGCAAAAATAGGGGTATATTATGTGATTCAAAAGACGCGAGTGTATTTGGTGCATTCTTGCAAACTTAGAACACTCTCACGTCTGTCAGGTCAGAGTCATTTACTTTCTCTCTCATACCATAGCGATTCAACCGGAGTTCAAACTACATTCGCAAATGTCAGTAATCCTTTAACTAATCTAATGTCATCTGTTTATTATTCGAAATTTAATTATTGATTGTCAATCGAATGAATAAATATACTCATATCTGCATCATCAAATCTATATATTTCCTGAAATTTGATCGAATCAGGGTTTAATCTATCTATTTCCTCTAATGTGGTCGAATTAGGGTTTTAATAGAAGAAAAGATGAATGGCGAATTGCCCAATGTGAAGACGTGGGTGATATTATATCCAGTATACATCAATTCGAAGAAAACAATTGCCGAAGGCCGCCGAATTTGCACTACCAAAGCTTGCGAAAATCCTACTTGCGATGAAATTGGTGATTGCTGCAAATTTCTCAATCTTCCTTACCATAAAGAGGTTTGATTTTATTTGTAATTTTGATCGCCGTCTTCAATTTTGCTTTTAATTTCGTCTGAATTTTATATTGATTCCGTTAATTTCGTTGAATTTCTCAATGTCCCCTATCTTTAAAGAGGTTTTCAATTTGTAGGCTGAGAAGGCGTATCCAAGAGACTTTATGCAGAGAGGGAGGGTGAGAGTATTGCTAAAACAAGAAGATGGGAGTTTGTGTAATCCTGAGATTTCGTCG

mRNA sequence

ATGTTGATGCTCCTGATAAATGTTGATCAAGTGTTTAAGGTCAGAGTCATTTACTTTCTCTCTCATACCATAGCGATTCAACCGGAGTTCAAACTACATTCGCAAATGGTTTTAATAGAAGAAAAGATGAATGGCGAATTGCCCAATGTGAAGACGTGGGTGATATTATATCCAGTATACATCAATTCGAAGAAAACAATTGCCGAAGGCCGCCGAATTTGCACTACCAAAGCTTGCGAAAATCCTACTTGCGATGAAATTGGTGATTGCTGCAAATTTCTCAATCTTCCTTACCATAAAGAGGCTGAGAAGGCGTATCCAAGAGACTTTATGCAGAGAGGGAGGGTGAGAGTATTGCTAAAACAAGAAGATGGGAGTTTGTGTAATCCTGAGATTTCGTCG

Coding sequence (CDS)

ATGTTGATGCTCCTGATAAATGTTGATCAAGTGTTTAAGGTCAGAGTCATTTACTTTCTCTCTCATACCATAGCGATTCAACCGGAGTTCAAACTACATTCGCAAATGGTTTTAATAGAAGAAAAGATGAATGGCGAATTGCCCAATGTGAAGACGTGGGTGATATTATATCCAGTATACATCAATTCGAAGAAAACAATTGCCGAAGGCCGCCGAATTTGCACTACCAAAGCTTGCGAAAATCCTACTTGCGATGAAATTGGTGATTGCTGCAAATTTCTCAATCTTCCTTACCATAAAGAGGCTGAGAAGGCGTATCCAAGAGACTTTATGCAGAGAGGGAGGGTGAGAGTATTGCTAAAACAAGAAGATGGGAGTTTGTGTAATCCTGAGATTTCGTCG

Protein sequence

MLMLLINVDQVFKVRVIYFLSHTIAIQPEFKLHSQMVLIEEKMNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06403.1Spo06403.1mRNA


Homology
[Close]
BLAST of Spo06403.1 vs. NCBI nr
Match: gi|902200797|gb|KNA13828.1| (hypothetical protein SOVF_113050 [Spinacia oleracea])

HSP 1 Score: 201.1 bits (510), Expect = 1.300e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 43  MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 102
           MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA
Sbjct: 1   MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 60

Query: 103 EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
           EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS
Sbjct: 61  EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 92
[Close]
BLAST of Spo06403.1 vs. NCBI nr
Match: gi|731364595|ref|XP_010694060.1| (PREDICTED: signal recognition particle 19 kDa protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 186.0 bits (471), Expect = 4.200e-44
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

		  

Query: 43  MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 102
           MNGELPNVK WV+ YP+YINSKKTIAEGRRI  +KACENPTCDEIGDCCKFLNLPYHKE 
Sbjct: 1   MNGELPNVKKWVVFYPIYINSKKTIAEGRRISASKACENPTCDEIGDCCKFLNLPYHKEV 60

Query: 103 EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
           EKAYPRDFMQRGRVRVLLK+EDGSLCNPEISS
Sbjct: 61  EKAYPRDFMQRGRVRVLLKREDGSLCNPEISS 92
[Close]
BLAST of Spo06403.1 vs. NCBI nr
Match: gi|297736744|emb|CBI25945.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 156.8 bits (395), Expect = 2.700e-35
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 

		  

Query: 32  LHSQMVLIEEKMNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCC 91
           L+ ++ ++   M+GE+PN+K W++ YPVYINSKKTIAEGRR+ T+KACENPTC EIGDCC
Sbjct: 24  LYYRLRILIGDMDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCAEIGDCC 83

Query: 92  KFLNLPYHKEAEKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
             L LP+  E +KAYPRDFMQRGRVRVLLK+EDG+L NP ISS
Sbjct: 84  SHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLYNPAISS 126
[Close]
BLAST of Spo06403.1 vs. NCBI nr
Match: gi|297736791|emb|CBI25992.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 156.4 bits (394), Expect = 3.600e-35
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 

		  

Query: 32  LHSQMVLIEEKMNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCC 91
           L+ ++ ++   M+GE+PN+K W++ YPVYINSKKTIAEGRR+ T+KACENPTC EIGDCC
Sbjct: 67  LYYRLRILIGDMDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCC 126

Query: 92  KFLNLPYHKEAEKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
             L LP+  E +KAYPRDFMQRGRVRVLLK+EDG+L NP ISS
Sbjct: 127 SHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLYNPAISS 169
[Close]
BLAST of Spo06403.1 vs. NCBI nr
Match: gi|731388465|ref|XP_010649612.1| (PREDICTED: signal recognition particle 19 kDa protein-like [Vitis vinifera])

HSP 1 Score: 156.0 bits (393), Expect = 4.600e-35
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 1 

		  

Query: 43  MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 102
           M+GE+PN+K W++ YPVYINSKKTIAEGRR+ T+KACENPTC EIGDCC  L LP+  E 
Sbjct: 1   MDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 103 EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
           +KAYPRDFMQRGRVRVLLK+EDG+L NP ISS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLYNPAISS 92
[Close]
BLAST of Spo06403.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2T6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113050 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.800e-49
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 43  MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 102
           MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA
Sbjct: 1   MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 60

Query: 103 EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
           EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS
Sbjct: 61  EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 92
[Close]
BLAST of Spo06403.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BF14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g070160 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.900e-44
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1 

		  

Query: 43  MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 102
           MNGELPNVK WV+ YP+YINSKKTIAEGRRI  +KACENPTCDEIGDCCKFLNLPYHKE 
Sbjct: 1   MNGELPNVKKWVVFYPIYINSKKTIAEGRRISASKACENPTCDEIGDCCKFLNLPYHKEV 60

Query: 103 EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
           EKAYPRDFMQRGRVRVLLK+EDGSLCNPEISS
Sbjct: 61  EKAYPRDFMQRGRVRVLLKREDGSLCNPEISS 92
[Close]
BLAST of Spo06403.1 vs. UniProtKB/TrEMBL
Match: D7T624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00020 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.900e-35
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 

		  

Query: 32  LHSQMVLIEEKMNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCC 91
           L+ ++ ++   M+GE+PN+K W++ YPVYINSKKTIAEGRR+ T+KACENPTC EIGDCC
Sbjct: 24  LYYRLRILIGDMDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCAEIGDCC 83

Query: 92  KFLNLPYHKEAEKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
             L LP+  E +KAYPRDFMQRGRVRVLLK+EDG+L NP ISS
Sbjct: 84  SHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLYNPAISS 126
[Close]
BLAST of Spo06403.1 vs. UniProtKB/TrEMBL
Match: D7T671_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00570 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.500e-35
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 

		  

Query: 32  LHSQMVLIEEKMNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCC 91
           L+ ++ ++   M+GE+PN+K W++ YPVYINSKKTIAEGRR+ T+KACENPTC EIGDCC
Sbjct: 67  LYYRLRILIGDMDGEVPNIKKWIVFYPVYINSKKTIAEGRRLSTSKACENPTCVEIGDCC 126

Query: 92  KFLNLPYHKEAEKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
             L LP+  E +KAYPRDFMQRGRVRVLLK+EDG+L NP ISS
Sbjct: 127 SHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLYNPAISS 169
[Close]
BLAST of Spo06403.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L2H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G304820 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.200e-34
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 1 

		  

Query: 43  MNGELPNVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEA 102
           M+GE+PN+K WV+LYP+YINSKKTIAEGRRI  +KACENPTC EIGDCC  L LP+  E 
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 103 EKAYPRDFMQRGRVRVLLKQEDGSLCNPEISS 135
           +KAYPRDFMQRGRVRVLLK+EDG+L NP I+S
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITS 92
[Close]
BLAST of Spo06403.1 vs. ExPASy Swiss-Prot
Match: SRP19_ARATH (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.100e-31
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1 

		  

Query: 49  NVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYPR 108
           N+K WV++YPVYINSKKT+AEGRRI  +K+CENP C EI DCCK L LP   E +KAYPR
Sbjct: 7   NIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEIDKAYPR 66

Query: 109 DFMQRGRVRVLLKQEDGSLCNPEISS 135
           DFMQ GRVRV LK+EDG+L NP I+S
Sbjct: 67  DFMQVGRVRVQLKREDGTLLNPAITS 92
[Close]
BLAST of Spo06403.1 vs. ExPASy Swiss-Prot
Match: SRP19_ORYSJ (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.300e-26
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1 

		  

Query: 49  NVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYPR 108
           ++K W ++YPVY+NSKKT+AEGRRI + KAC +PTC EI DCC  L +P+  E +KAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 109 DFMQRGRVRVLLKQEDGSLCNPEISS 135
           DF Q GRVRV LK++DGS  NP I +
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKT 94
[Close]
BLAST of Spo06403.1 vs. ExPASy Swiss-Prot
Match: SRP19_BOVIN (Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-16
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1 

		  

Query: 53  WVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYP----R 112
           ++ +YP Y+N+KKTIAEGRRI  +KA ENPT  EI D C  + L    E  K Y     R
Sbjct: 15  FICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNVFLEKNKMYSREWNR 74

Query: 113 DFMQRGRVRVLLKQEDGSLC 129
           D   RGRVRV LKQEDGSLC
Sbjct: 75  DLQYRGRVRVQLKQEDGSLC 94
[Close]
BLAST of Spo06403.1 vs. ExPASy Swiss-Prot
Match: SRP19_PONAB (Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-16
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1 

		  

Query: 53  WVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYP----R 112
           ++ +YP Y+N+KKTIAEGRRI  +KA ENPT  EI D C  + L    E  K Y     R
Sbjct: 15  FICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNR 74

Query: 113 DFMQRGRVRVLLKQEDGSLC 129
           D   RGRVRV LKQEDGSLC
Sbjct: 75  DVQYRGRVRVQLKQEDGSLC 94
[Close]
BLAST of Spo06403.1 vs. ExPASy Swiss-Prot
Match: SRP19_HUMAN (Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-16
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1 

		  

Query: 53  WVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYP----R 112
           ++ +YP Y+N+KKTIAEGRRI  +KA ENPT  EI D C  + L    E  K Y     R
Sbjct: 15  FICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNR 74

Query: 113 DFMQRGRVRVLLKQEDGSLC 129
           D   RGRVRV LKQEDGSLC
Sbjct: 75  DVQYRGRVRVQLKQEDGSLC 94
[Close]
BLAST of Spo06403.1 vs. TAIR (Arabidopsis)
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative)

HSP 1 Score: 134.4 bits (337), Expect = 5.100e-32
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1 

		  

Query: 49  NVKTWVILYPVYINSKKTIAEGRRICTTKACENPTCDEIGDCCKFLNLPYHKEAEKAYPR 108
           N+K WV++YPVYINSKKT+AEGRRI  +K+CENP C EI DCCK L LP   E +KAYPR
Sbjct: 7   NIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEIDKAYPR 66

Query: 109 DFMQRGRVRVLLKQEDGSLCNPEISS 135
           DFMQ GRVRV LK+EDG+L NP I+S
Sbjct: 67  DFMQVGRVRVQLKREDGTLLNPAITS 92
The following BLAST results are available for this feature:
BLAST of Spo06403.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902200797|gb|KNA13828.1|1.3e-48100.hypothetical protein SOVF_1130... [more]
gi|731364595|ref|XP_010694060.1|4.2e-4490.2PREDICTED: signal recognition ... [more]
gi|297736744|emb|CBI25945.3|2.7e-3567.9unnamed protein product [Vitis... [more]
gi|297736791|emb|CBI25992.3|3.6e-3567.9unnamed protein product [Vitis... [more]
gi|731388465|ref|XP_010649612.1|4.6e-3575.0PREDICTED: signal recognition ... [more]
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BLAST of Spo06403.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R2T6_SPIOL8.8e-49100.Uncharacterized protein OS=Spi... [more]
A0A0J8BF14_BETVU2.9e-4490.2Uncharacterized protein OS=Bet... [more]
D7T624_VITVI1.9e-3567.9Putative uncharacterized prote... [more]
D7T671_VITVI2.5e-3567.9Putative uncharacterized prote... [more]
A0A0A0L2H8_CUCSA1.2e-3475.0Uncharacterized protein OS=Cuc... [more]
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BLAST of Spo06403.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SRP19_ARATH9.1e-3169.7Signal recognition particle 19... [more]
SRP19_ORYSJ2.3e-2660.4Signal recognition particle 19... [more]
SRP19_BOVIN1.3e-1656.2Signal recognition particle 19... [more]
SRP19_PONAB1.3e-1656.2Signal recognition particle 19... [more]
SRP19_HUMAN1.3e-1656.2Signal recognition particle 19... [more]
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BLAST of Spo06403.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G48160.15.1e-3269.7signal recognition particle 19... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002778Signal recognition particle, SRP19 subunitGENE3D3.30.56.30coord: 45..133
score: 5.0
IPR002778Signal recognition particle, SRP19 subunitPANTHERPTHR17453SIGNAL RECOGNITION PARTICLE 19 KD PROTEINcoord: 3..134
score: 3.4
IPR002778Signal recognition particle, SRP19 subunitPFAMPF01922SRP19coord: 55..133
score: 1.9
IPR002778Signal recognition particle, SRP19 subunitunknownSSF69695SRP19coord: 48..132
score: 2.88

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0009790 embryo development
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0046520 sphingoid biosynthetic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0042761 very long-chain fatty acid biosynthetic process
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0018454 acetoacetyl-CoA reductase activity
molecular_function GO:0045703 ketoreductase activity
RNA-Seq Expression