Spo06331 (gene)

Overview
NameSpo06331
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionHistone H2A
Locationchr4 : 27946210 .. 27947335 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTACGGAGTAATGGACATTCAGCCCAACCTACAAAATCTTCCCTTCCCAAGACACCTCAATCTCATTGGCTGAAACCTCTTTCACACGGATCGCCAGCGTGTCTAATTGACAACCGTCAGATACAAACCTCTCCCGTTTCACCAGCCCTAGATTGCAACTTTCCCATTTCCCCTGAAAATCCAAACTCCAAATCCTCATTTCCCCCACCCTATAAATACCACCTCACTCCCCCCTTTTCCATTCACACCGCTCATTTTCTCTCTCTTTCGAACATACTTACAAATCCTTCAACAACAATGGAGACCACCAAGAAAACCACCAAAGGCGCCGGCGGCCGTGGCGGTCGTGGAAGCGGAGAGAGAAAGAAGTCTGTCACAAAATCCCTCAAAGCTGGCCTCCAGTTCCCCGTCGGAAGAATCTCCCGTTTCCTCAAAAAAGGTCGTTACGCTCAACGTCTCAGCTCCGCTTCACCAGTTTACCTCGCCGCCGTCCTAGAGTATCTCGCCGCGGAGGTATAAGCAACTTCCCTGTTTTTTTTTTTGAAAATCATTGTTTGAAAATGGTGCTAAATCTGAAATGGCGATTGTTTTTGTTGGTTTAGGTGTTGGAGCTAGCAGGGAATGCAGCACGAGACAACAAGAAGAGCAGGATCATCCCAAGGCACTTGCTGCTAGCGATTAGGAATGATGATGAGCTCGGAAAGCTTCTTCATGGTGTTACAATTGCGAATGGTGGTGTTCTTCCTAACATCCATTCCGTGTTGCTGCCTAAGAAGAAGGAATCTCAAACTCCCCCTTCTCCTTCTGGAAAGGACAAATCCAAGGCTGACAAGTCACCTAAGAAAACTCCTAAGAAGGCCTGATTGTTGTTAATCATGATTGAATTAATGAGATGTAAATTTTGGGATAATGACATGGTGCTAATTTTAGGGTTAGTTTATGGGTCTCGTTTTGGGTAATATTAATTGGAAGAAGGAATGTAGTTACTTTTTGGGTAATCAATTACGGGTTTAGTTTCTGCTCTTTTTGTTGCAAAAATGTCATGAAATTATATATTGAAATCGAAATGGTCGTTCATCTTTTGCACATTCTCTCTTTTAATTATTTATTAGAAATTCCGC

mRNA sequence

AATTATTACGGAGTAATGGACATTCAGCCCAACCTACAAAATCTTCCCTTCCCAAGACACCTCAATCTCATTGGCTGAAACCTCTTTCACACGGATCGCCAGCGTGTCTAATTGACAACCGTCAGATACAAACCTCTCCCGTTTCACCAGCCCTAGATTGCAACTTTCCCATTTCCCCTGAAAATCCAAACTCCAAATCCTCATTTCCCCCACCCTATAAATACCACCTCACTCCCCCCTTTTCCATTCACACCGCTCATTTTCTCTCTCTTTCGAACATACTTACAAATCCTTCAACAACAATGGAGACCACCAAGAAAACCACCAAAGGCGCCGGCGGCCGTGGCGGTCGTGGAAGCGGAGAGAGAAAGAAGTCTGTCACAAAATCCCTCAAAGCTGGCCTCCAGTTCCCCGTCGGAAGAATCTCCCGTTTCCTCAAAAAAGGTCGTTACGCTCAACGTCTCAGCTCCGCTTCACCAGTTTACCTCGCCGCCGTCCTAGAGTATCTCGCCGCGGAGGTGTTGGAGCTAGCAGGGAATGCAGCACGAGACAACAAGAAGAGCAGGATCATCCCAAGGCACTTGCTGCTAGCGATTAGGAATGATGATGAGCTCGGAAAGCTTCTTCATGGTGTTACAATTGCGAATGGTGGTGTTCTTCCTAACATCCATTCCGTGTTGCTGCCTAAGAAGAAGGAATCTCAAACTCCCCCTTCTCCTTCTGGAAAGGACAAATCCAAGGCTGACAAGTCACCTAAGAAAACTCCTAAGAAGGCCTGATTGTTGTTAATCATGATTGAATTAATGAGATGTAAATTTTGGGATAATGACATGGTGCTAATTTTAGGGTTAGTTTATGGGTCTCGTTTTGGGTAATATTAATTGGAAGAAGGAATGTAGTTACTTTTTGGGTAATCAATTACGGGTTTAGTTTCTGCTCTTTTTGTTGCAAAAATGTCATGAAATTATATATTGAAATCGAAATGGTCGTTCATCTTTTGCACATTCTCTCTTTTAATTATTTATTAGAAATTCCGC

Coding sequence (CDS)

ATGGAGACCACCAAGAAAACCACCAAAGGCGCCGGCGGCCGTGGCGGTCGTGGAAGCGGAGAGAGAAAGAAGTCTGTCACAAAATCCCTCAAAGCTGGCCTCCAGTTCCCCGTCGGAAGAATCTCCCGTTTCCTCAAAAAAGGTCGTTACGCTCAACGTCTCAGCTCCGCTTCACCAGTTTACCTCGCCGCCGTCCTAGAGTATCTCGCCGCGGAGGTGTTGGAGCTAGCAGGGAATGCAGCACGAGACAACAAGAAGAGCAGGATCATCCCAAGGCACTTGCTGCTAGCGATTAGGAATGATGATGAGCTCGGAAAGCTTCTTCATGGTGTTACAATTGCGAATGGTGGTGTTCTTCCTAACATCCATTCCGTGTTGCTGCCTAAGAAGAAGGAATCTCAAACTCCCCCTTCTCCTTCTGGAAAGGACAAATCCAAGGCTGACAAGTCACCTAAGAAAACTCCTAAGAAGGCCTGA

Protein sequence

METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLPNIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06331.1Spo06331.1mRNA


Homology
[Close]
BLAST of Spo06331.1 vs. NCBI nr
Match: gi|902233848|gb|KNA23221.1| (hypothetical protein SOVF_026790 [Spinacia oleracea])

HSP 1 Score: 293.5 bits (750), Expect = 2.200e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV
Sbjct: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA 159
           NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA
Sbjct: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA 158
[Close]
BLAST of Spo06331.1 vs. NCBI nr
Match: gi|731326456|ref|XP_010674032.1| (PREDICTED: probable histone H2A.1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 211.1 bits (536), Expect = 1.400e-51
Identity = 121/157 (77.07%), Postives = 133/157 (84.71%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME+ K T+KGA GR G   G+RKKSVT+S+KAGLQFPVGRI RFLKKGRYAQR+ S +PV
Sbjct: 1   MESGKTTSKGAAGRRG---GDRKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRH+LLAIRNDDELGKLLHGVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAIRNDDELGKLLHGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKES----QTPPSPSGKDKSKADKSPKK 154
           NI+ +LLPK+ ES     TP SP     SKA KSPKK
Sbjct: 121 NINPILLPKRTESSKKENTPVSP-----SKATKSPKK 149
[Close]
BLAST of Spo06331.1 vs. NCBI nr
Match: gi|976907230|gb|KVH94614.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 207.6 bits (527), Expect = 1.600e-50
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME T K  KGAGGR  +G G RKKSVT+S+KAGLQFPVGRI R+LKKGRYAQR+ + +PV
Sbjct: 1   MEGTGKVKKGAGGR--KGGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRND+ELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKT 155
           NI+ +LLPKK  ++ P SP     SKA KSPKKT
Sbjct: 121 NINPILLPKKTATKEPKSP-----SKATKSPKKT 147
[Close]
BLAST of Spo06331.1 vs. NCBI nr
Match: gi|698584103|ref|XP_009778270.1| (PREDICTED: histone H2A.1 [Nicotiana sylvestris])

HSP 1 Score: 205.3 bits (521), Expect = 7.900e-50
Identity = 115/153 (75.16%), Postives = 129/153 (84.31%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME   KTTKGAGGR  +G G RKKSVTKS+KAGLQFPVGRI+RFLKKGRYAQR+ S +P+
Sbjct: 1   MEAATKTTKGAGGR--KGGGPRKKSVTKSVKAGLQFPVGRIARFLKKGRYAQRVGSGAPI 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRH+LLA+RND+ELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLSGVTIASGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK  +    + +     KA KSPKK
Sbjct: 121 NINPVLLPKKSAAAEEKAST----PKATKSPKK 147
[Close]
BLAST of Spo06331.1 vs. NCBI nr
Match: gi|976929127|gb|KVI11989.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 204.9 bits (520), Expect = 1.000e-49
Identity = 114/153 (74.51%), Postives = 130/153 (84.97%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           METT K  KGAGGR  +G G RKK+VT+S++AGLQFPVGRI R+LK GRYA+R+ + +PV
Sbjct: 1   METTGKAKKGAGGR--KGGGPRKKAVTRSIRAGLQFPVGRIGRYLKNGRYAKRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDDELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK  ++ P SP     SKA KSPKK
Sbjct: 121 NINPVLLPKKTAAKEPKSP-----SKATKSPKK 146
[Close]
BLAST of Spo06331.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUK9_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_026790 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.500e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV
Sbjct: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA 159
           NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA
Sbjct: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA 158
[Close]
BLAST of Spo06331.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQA6_BETVU (Histone H2A OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g075650 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.000e-51
Identity = 121/157 (77.07%), Postives = 133/157 (84.71%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME+ K T+KGA GR G   G+RKKSVT+S+KAGLQFPVGRI RFLKKGRYAQR+ S +PV
Sbjct: 1   MESGKTTSKGAAGRRG---GDRKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRH+LLAIRNDDELGKLLHGVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAIRNDDELGKLLHGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKES----QTPPSPSGKDKSKADKSPKK 154
           NI+ +LLPK+ ES     TP SP     SKA KSPKK
Sbjct: 121 NINPILLPKRTESSKKENTPVSP-----SKATKSPKK 149
[Close]
BLAST of Spo06331.1 vs. UniProtKB/TrEMBL
Match: A0A118JWK5_CYNCS (Histone H2A OS=Cynara cardunculus var. scolymus GN=Ccrd_003326 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.100e-50
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME T K  KGAGGR  +G G RKKSVT+S+KAGLQFPVGRI R+LKKGRYAQR+ + +PV
Sbjct: 1   MEGTGKVKKGAGGR--KGGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRND+ELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKT 155
           NI+ +LLPKK  ++ P SP     SKA KSPKKT
Sbjct: 121 NINPILLPKKTATKEPKSP-----SKATKSPKKT 147
[Close]
BLAST of Spo06331.1 vs. UniProtKB/TrEMBL
Match: Q8H0G7_TOBAC (Histone H2A OS=Nicotiana tabacum GN=A34 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.500e-50
Identity = 115/153 (75.16%), Postives = 129/153 (84.31%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME   KTTKGAGGR  +G G RKKSVTKS+KAGLQFPVGRI+RFLKKGRYAQR+ S +P+
Sbjct: 1   MEAATKTTKGAGGR--KGGGPRKKSVTKSVKAGLQFPVGRIARFLKKGRYAQRVGSGAPI 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRH+LLA+RND+ELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLSGVTIASGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK  +    + +     KA KSPKK
Sbjct: 121 NINPVLLPKKSAAAEEKAST----PKATKSPKK 147
[Close]
BLAST of Spo06331.1 vs. UniProtKB/TrEMBL
Match: A0A103YMR9_CYNCS (Histone H2A OS=Cynara cardunculus var. scolymus GN=Ccrd_009601 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.200e-50
Identity = 114/153 (74.51%), Postives = 130/153 (84.97%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           METT K  KGAGGR  +G G RKK+VT+S++AGLQFPVGRI R+LK GRYA+R+ + +PV
Sbjct: 1   METTGKAKKGAGGR--KGGGPRKKAVTRSIRAGLQFPVGRIGRYLKNGRYAKRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDDELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK  ++ P SP     SKA KSPKK
Sbjct: 121 NINPVLLPKKTAAKEPKSP-----SKATKSPKK 146
[Close]
BLAST of Spo06331.1 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.400e-51
Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           M+ + KT KGAGGR  +G G RKKSVT+S++AGLQFPVGR+ RFLKKGRYAQR+ + +PV
Sbjct: 1   MDASTKTKKGAGGR--KGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RI PRHLLLA+RND+ELGKLL GVTIA GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPK+KE+    +P  K  SKA KSPKK
Sbjct: 121 NINPVLLPKRKENAAASTP--KSPSKAKKSPKK 149
[Close]
BLAST of Spo06331.1 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.900e-51
Identity = 115/148 (77.70%), Postives = 126/148 (85.14%), Query Frame = 1 

		  

Query: 6   KTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPVYLAAV 65
           KTTKGAGGR G   G RKKSVTKS+KAGLQFPVGRI R+LKKGRYAQR+ S +P+YLAAV
Sbjct: 5   KTTKGAGGRKG---GPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAV 64

Query: 66  LEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLPNIHSV 125
           LEYLAAEVLELAGNAARDNKKSRIIPRH+LLA+RND+ELGKLL GVTIA+GGVLPNI+ V
Sbjct: 65  LEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPV 124

Query: 126 LLPKKKESQTPPSPSGKDKSKADKSPKK 154
           LLPKK       SP    K+KA KSPKK
Sbjct: 125 LLPKKSAVAEEKSP----KAKAGKSPKK 145
[Close]
BLAST of Spo06331.1 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.400e-51
Identity = 113/154 (73.38%), Postives = 129/154 (83.77%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           M+ + KT KGAGGR  +G G RKKSVT+S++AGLQFPVGRI R+LKKGRYAQR+ + +PV
Sbjct: 1   MDASTKTKKGAGGR--KGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RND+ELGKLL GVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKD-KSKADKSPKK 154
           NI+ VLLPKK E     S   K  K KA KSPKK
Sbjct: 121 NINPVLLPKKTERSNTVSKEPKSPKPKAGKSPKK 152
[Close]
BLAST of Spo06331.1 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.600e-50
Identity = 113/153 (73.86%), Postives = 125/153 (81.70%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           MET  K  KG GGR G   G RKKSVT+S+KAGLQFPVGRI R+LKKGRYAQR+ + +PV
Sbjct: 1   METAGKAKKGFGGRKG---GPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHLLLA+RND+ELGKLL GVT A+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK   +    P  K  SKA KSPKK
Sbjct: 121 NINPVLLPKKTAEKAAKEP--KSPSKAGKSPKK 148
[Close]
BLAST of Spo06331.1 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.600e-50
Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME+++ TTK   G GGR  G+RKKSV+KS+KAGLQFPVGRI+R+LKKGRYA R  S +PV
Sbjct: 1   MESSQATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RI PRHL LAIRND+ELG+LLHGVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK  +    S S  +K+ A KSPKK
Sbjct: 121 NINPVLLPKKSTA----SSSQAEKASATKSPKK 149
[Close]
BLAST of Spo06331.1 vs. TAIR (Arabidopsis)
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 198.7 bits (504), Expect = 2.600e-51
Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME+++ TTK   G GGR  G+RKKSV+KS+KAGLQFPVGRI+R+LKKGRYA R  S +PV
Sbjct: 1   MESSQATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RI PRHL LAIRND+ELG+LLHGVTIA+GGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKK 154
           NI+ VLLPKK  +    S S  +K+ A KSPKK
Sbjct: 121 NINPVLLPKKSTA----SSSQAEKASATKSPKK 149
[Close]
BLAST of Spo06331.1 vs. TAIR (Arabidopsis)
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 197.6 bits (501), Expect = 5.800e-51
Identity = 117/158 (74.05%), Postives = 131/158 (82.91%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           ME+T K  K  GGR   G+  + KSV+KS+KAGLQFPVGRI+RFLKKGRYAQRL   +PV
Sbjct: 1   MESTGKVKKAFGGRKPPGA-PKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLP 120
           Y+AAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRND+ELGKLL GVTIA+GGVLP
Sbjct: 61  YMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLP 120

Query: 121 NIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKTPKKA 159
           NI+SVLLPKK  S T P+     + KA KSP K+PKKA
Sbjct: 121 NINSVLLPKK--SATKPA-----EEKATKSPVKSPKKA 150
[Close]
BLAST of Spo06331.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 177.2 bits (448), Expect = 8.100e-45
Identity = 91/125 (72.80%), Postives = 108/125 (86.40%), Query Frame = 1 

		  

Query: 13  GRGGR-GSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPVYLAAVLEYLAA 72
           GRG   GSG  KK+ T+S KAGLQFPVGRI+RFLKKG+YA+R+ + +PVYLAAVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 73  EVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLPNIHSVLLPKKK 132
           EVLELAGNAARDNKK+RI+PRH+ LA+RND+EL KLL  VTIANGGV+PNIH++LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 133 ESQTP 137
            +  P
Sbjct: 123 GASKP 127
[Close]
BLAST of Spo06331.1 vs. TAIR (Arabidopsis)
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 176.0 bits (445), Expect = 1.800e-44
Identity = 103/178 (57.87%), Postives = 126/178 (70.79%), Query Frame = 1 

		  

Query: 1   METTKKTTKGAGGRGGRGSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPV 60
           M++  K  KGA GR   G G +KK V++S+K+GLQFPVGRI R+LKKGRY++R+ + +PV
Sbjct: 1   MDSGTKVKKGAAGRRS-GGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPV 60

Query: 61  YLAAVLEYLAAE------------------------VLELAGNAARDNKKSRIIPRHLLL 120
           YLAAVLEYLAAE                        VLELAGNAARDNKK+RIIPRH+LL
Sbjct: 61  YLAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLL 120

Query: 121 AIRNDDELGKLLHGVTIANGGVLPNIHSVLLPKKKESQTPPSPSGKDKSKADKSPKKT 155
           A+RND+ELG LL GVTIA+GGVLPNI+ +LLPKK E     + + K  SKA KSPKK+
Sbjct: 121 AVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177
[Close]
BLAST of Spo06331.1 vs. TAIR (Arabidopsis)
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 176.0 bits (445), Expect = 1.800e-44
Identity = 91/125 (72.80%), Postives = 108/125 (86.40%), Query Frame = 1 

		  

Query: 13  GRGGR-GSGERKKSVTKSLKAGLQFPVGRISRFLKKGRYAQRLSSASPVYLAAVLEYLAA 72
           GRG + GSG  KKS ++S KAGLQFPVGRI+RFLK G+YA+R+ + +PVYLAAVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 73  EVLELAGNAARDNKKSRIIPRHLLLAIRNDDELGKLLHGVTIANGGVLPNIHSVLLPKKK 132
           EVLELAGNAARDNKK+RI+PRH+ LA+RND+EL KLL  VTIANGGV+PNIH++LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 133 ESQTP 137
            S  P
Sbjct: 123 GSSKP 127
The following BLAST results are available for this feature:
BLAST of Spo06331.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902233848|gb|KNA23221.1|2.2e-76100.hypothetical protein SOVF_0267... [more]
gi|731326456|ref|XP_010674032.1|1.4e-5177.0PREDICTED: probable histone H2... [more]
gi|976907230|gb|KVH94614.1|1.6e-5075.3Histone core [Cynara carduncul... [more]
gi|698584103|ref|XP_009778270.1|7.9e-5075.1PREDICTED: histone H2A.1 [Nico... [more]
gi|976929127|gb|KVI11989.1|1.0e-4974.5Histone core [Cynara carduncul... [more]
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BLAST of Spo06331.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RUK9_SPIOL1.5e-76100.Histone H2A OS=Spinacia olerac... [more]
A0A0J8CQA6_BETVU1.0e-5177.0Histone H2A OS=Beta vulgaris s... [more]
A0A118JWK5_CYNCS1.1e-5075.3Histone H2A OS=Cynara carduncu... [more]
Q8H0G7_TOBAC5.5e-5075.1Histone H2A OS=Nicotiana tabac... [more]
A0A103YMR9_CYNCS7.2e-5074.5Histone H2A OS=Cynara carduncu... [more]
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BLAST of Spo06331.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H2A1_PEA1.4e-5173.8Histone H2A.1 OS=Pisum sativum... [more]
H2A1_SOLLC1.9e-5177.7Histone H2A.1 OS=Solanum lycop... [more]
H2A2_MEDTR5.4e-5173.3Probable histone H2A.2 OS=Medi... [more]
H2A_PETCR4.6e-5073.8Histone H2A OS=Petroselinum cr... [more]
H2A5_ARATH4.6e-5072.5Probable histone H2A.5 OS=Arab... [more]
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BLAST of Spo06331.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G27670.12.6e-5172.5histone H2A 7[more]
AT5G59870.15.8e-5174.0histone H2A 6[more]
AT1G51060.18.1e-4572.8histone H2A 10[more]
AT5G02560.21.8e-4457.8histone H2A 12[more]
AT4G27230.11.8e-4472.8histone H2A 2[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 82..96
score: 5.2E-49coord: 24..46
score: 5.2E-49coord: 53..68
score: 5.2E-49coord: 68..81
score: 5.2E-49coord: 110..128
score: 5.2
IPR002119Histone H2ASMARTSM00414h2a4coord: 13..133
score: 3.8
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 20..99
score: 6.8
IPR009072Histone-foldGENE3D1.10.20.10coord: 16..132
score: 1.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 27..130
score: 7.18
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 10..157
score: 4.9E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006364 rRNA processing
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006342 chromatin silencing
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0032776 DNA methylation on cytosine
biological_process GO:0006310 DNA recombination
biological_process GO:0016570 histone modification
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0006306 DNA methylation
biological_process GO:0001510 RNA methylation
biological_process GO:0006270 DNA replication initiation
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0009909 regulation of flower development
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0051301 cell division
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0030036 actin cytoskeleton organization
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006094 gluconeogenesis
biological_process GO:0010498 proteasomal protein catabolic process
cellular_component GO:0042555 MCM complex
cellular_component GO:0000785 chromatin
cellular_component GO:0009506 plasmodesma
cellular_component GO:0046809 replication compartment
cellular_component GO:0005657 replication fork
cellular_component GO:0005840 ribosome
cellular_component GO:0000786 nucleosome
cellular_component GO:0043229 intracellular organelle
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005829 cytosol
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0003688 DNA replication origin binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0042393 histone binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0003746 translation elongation factor activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo124580.80Barchart | Table
Spo115920.78Barchart | Table
Spo000820.77Barchart | Table
Spo133780.75Barchart | Table
Spo059700.74Barchart | Table
Spo123110.74Barchart | Table
Spo082140.73Barchart | Table
Spo281520.73Barchart | Table
Spo028380.73Barchart | Table
Spo232200.73Barchart | Table
Spo134120.73Barchart | Table
Spo055890.72Barchart | Table
Spo077110.71Barchart | Table
Spo232410.71Barchart | Table
Spo032410.70Barchart | Table
Spo067420.70Barchart | Table
Spo282890.70Barchart | Table
Spo052440.70Barchart | Table
Spo209970.70Barchart | Table
Spo046670.70Barchart | Table
Spo088160.69Barchart | Table
Spo050640.69Barchart | Table
Spo054610.69Barchart | Table
Spo180940.69Barchart | Table
Spo192360.68Barchart | Table
Spo157510.68Barchart | Table
Spo212060.68Barchart | Table
Spo156040.68Barchart | Table
Spo119430.68Barchart | Table
Spo023800.68Barchart | Table
Spo056600.68Barchart | Table
Spo105990.67Barchart | Table
Spo115940.67Barchart | Table
Spo120480.67Barchart | Table
Spo000710.67Barchart | Table
Spo151320.67Barchart | Table
Spo165140.67Barchart | Table
Spo010920.67Barchart | Table
Spo105980.67Barchart | Table
Spo042080.66Barchart | Table
Spo115930.66Barchart | Table
Spo123040.66Barchart | Table
Spo172990.66Barchart | Table
Spo002850.66Barchart | Table
Spo118500.66Barchart | Table
Spo253060.65Barchart | Table
Spo103270.65Barchart | Table
Spo208460.65Barchart | Table
Spo121910.65Barchart | Table
Spo057830.65Barchart | Table
Spo251760.65Barchart | Table
Spo059090.65Barchart | Table