Spo06200 (gene) | SpinachBase

Overview


Name	Spo06200
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) (Precursor)
Location	Super_scaffold_232 : 2211906 .. 2212859 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACAATTTTGGGCATTCACTTAATCTTGTTAGGTATAGGCGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCACCTTTTGGAGGAGAAGGGTGGATTGCTAGTGTAGACGATTTGGAAGATATAATAGGGGGGCATGTATGGATAGGTTTCATTTGTATACTTGGTGGAATCTGGCATATTTTAACAAAACCTTTTGCATGGGCTCGCCGCGCACTTGTCTGGTCTGGCGAGGCTTATTTGTCTTATAGTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

mRNA sequence

ATGACCACAATTTTGGGCATTCACTTAATCTTGTTAGGTATAGGCGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCACCTTTTGGAGGAGAAGGGTGGATTGCTAGTGTAGACGATTTGGAAGATATAATAGGGGGGCATGTATGGATAGGTTTCATTTGTATACTTGGTGGAATCTGGCATATTTTAACAAAACCTTTTGCATGGGCTCGCCGCGCACTTGTCTGGTCTGGCGAGGCTTATTTGTCTTATAGTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Coding sequence (CDS)

ATGACCACAATTTTGGGCATTCACTTAATCTTGTTAGGTATAGGCGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCACCTTTTGGAGGAGAAGGGTGGATTGCTAGTGTAGACGATTTGGAAGATATAATAGGGGGGCATGTATGGATAGGTTTCATTTGTATACTTGGTGGAATCTGGCATATTTTAACAAAACCTTTTGCATGGGCTCGCCGCGCACTTGTCTGGTCTGGCGAGGCTTATTTGTCTTATAGTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Protein sequence

MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKSPFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06200.1	Spo06200.1	mRNA

Homology

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BLAST of Spo06200.1 vs. NCBI nr
Match: gi|372000477|gb|AEX65315.1| (photosystem II protein CP43, partial (chloroplast) [Anredera baselloides])

HSP 1 Score: 656.8 bits (1693), Expect = 2.000e-185
Identity = 314/317 (99.05%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 170 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 229

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 230 PFGGEGWIVSVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 289

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 290 GALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 349

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 350 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 409

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 410 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 469

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 470 KGIDRDFEPVLSMTPLN 486

[Close]

BLAST of Spo06200.1 vs. NCBI nr
Match: gi|910354313|ref|YP_009160798.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 654.8 bits (1688), Expect = 7.500e-185
Identity = 313/317 (98.74%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGG+YDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIG ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWIGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. NCBI nr
Match: gi|746948630|ref|YP_009115411.1| (photosystem II 44 kDa protein (chloroplast) [Acacia ligulata])

HSP 1 Score: 654.8 bits (1688), Expect = 7.500e-185
Identity = 312/317 (98.42%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPSIIFGYLLKS
Sbjct: 145 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSIIFGYLLKS 204

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+GFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 205 PFGGEGWIVSVDDLEDIIGGHVWLGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 264

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 265 GALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 324

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 325 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 384

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 385 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 444

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 445 KGIDRDFEPVLSMTPLN 461

[Close]

BLAST of Spo06200.1 vs. NCBI nr
Match: gi|628819104|gb|AHY80537.1| (photosystem II CP43 chlorophyll apoprotein (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 654.8 bits (1688), Expect = 7.500e-185
Identity = 313/317 (98.74%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGG+YDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIG ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWIGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. NCBI nr
Match: gi|570880013|ref|YP_008994286.1| (photosystem II CP43 chlorophyll apoprotein [Melianthus villosus])

HSP 1 Score: 654.1 bits (1686), Expect = 1.300e-184
Identity = 312/317 (98.42%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPS+IFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+G ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
Match: H2BBS7_9CARY (Photosystem II CP43 reaction center protein (Fragment) OS=Anredera baselloides GN=psbC PE=3 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 1.400e-185
Identity = 314/317 (99.05%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 170 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 229

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 230 PFGGEGWIVSVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 289

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 290 GALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 349

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 350 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 409

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 410 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 469

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 470 KGIDRDFEPVLSMTPLN 486

[Close]

BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
Match: A0A023ZR91_BETVU (Photosystem II CP43 reaction center protein OS=Beta vulgaris subsp. vulgaris GN=psbC PE=3 SV=1)

HSP 1 Score: 654.8 bits (1688), Expect = 5.300e-185
Identity = 313/317 (98.74%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGG+YDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIG ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWIGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K8F0_9CARY (Photosystem II CP43 reaction center protein OS=Haloxylon persicum GN=psbC PE=3 SV=1)

HSP 1 Score: 654.8 bits (1688), Expect = 5.300e-185
Identity = 313/317 (98.74%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGG+YDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIG ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWIGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K870_9CARY (Photosystem II CP43 reaction center protein OS=Haloxylon ammodendron GN=psbC PE=3 SV=1)

HSP 1 Score: 654.8 bits (1688), Expect = 5.300e-185
Identity = 313/317 (98.74%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGG+YDTWAPGGGDVRKITNVTLSPSIIFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIG ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWIGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
Match: A0A0A8LG18_9FABA (Photosystem II CP43 reaction center protein OS=Acacia ligulata GN=psbC PE=3 SV=1)

HSP 1 Score: 654.8 bits (1688), Expect = 5.300e-185
Identity = 312/317 (98.42%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPSIIFGYLLKS
Sbjct: 145 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSIIFGYLLKS 204

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+GFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 205 PFGGEGWIVSVDDLEDIIGGHVWLGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 264

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 265 GALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 324

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 325 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 384

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 385 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 444

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 445 KGIDRDFEPVLSMTPLN 461

[Close]

BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 reaction center protein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 1.400e-186
Identity = 314/317 (99.05%), Postives = 314/317 (99.05%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFG LLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGCLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVWIG ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWIGVICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
Match: PSBC_EUCGG (Photosystem II CP43 reaction center protein OS=Eucalyptus globulus subsp. globulus GN=psbC PE=3 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 1.800e-186
Identity = 311/317 (98.11%), Postives = 315/317 (99.37%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPS+IFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+G ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
Match: PSBC_AMBTC (Photosystem II CP43 reaction center protein OS=Amborella trichopoda GN=psbC PE=3 SV=1)

HSP 1 Score: 652.1 bits (1681), Expect = 3.100e-186
Identity = 308/317 (97.16%), Postives = 314/317 (99.05%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLG+GAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPS+IFGYLLKS
Sbjct: 157 MTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+GFICILGGIWHILTKPFAWARRA VWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWLGFICILGGIWHILTKPFAWARRAFVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALS+FGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 GALSIFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
Match: PSBC_PANGI (Photosystem II CP43 reaction center protein OS=Panax ginseng GN=psbC PE=3 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 4.000e-186
Identity = 311/317 (98.11%), Postives = 314/317 (99.05%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPSIIFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSIIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+G ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 GALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
Match: PSBC_MANES (Photosystem II CP43 reaction center protein OS=Manihot esculenta GN=psbC PE=3 SV=1)

HSP 1 Score: 651.4 bits (1679), Expect = 5.200e-186
Identity = 310/317 (97.79%), Postives = 314/317 (99.05%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPS+IFGYLLKS
Sbjct: 157 MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+G ICILGGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
            ALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 GALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

[Close]

BLAST of Spo06200.1 vs. TAIR (Arabidopsis)
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 649.0 bits (1673), Expect = 1.500e-186
Identity = 309/317 (97.48%), Postives = 313/317 (98.74%), Query Frame = 1


		  
Query: 1   MTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKS 60
           MTTILGIHLILLG+GAFLLVFKALYFGGVYDTWAPGGGDVRKITN+TLSPS+IFGYLLKS
Sbjct: 157 MTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKS 216

Query: 61  PFGGEGWIASVDDLEDIIGGHVWIGFICILGGIWHILTKPFAWARRALVWSGEAYLSYSL 120
           PFGGEGWI SVDDLEDIIGGHVW+G ICI GGIWHILTKPFAWARRALVWSGEAYLSYSL
Sbjct: 217 PFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKPFAWARRALVWSGEAYLSYSL 276

Query: 121 AALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 180
           AALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG
Sbjct: 277 AALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTG 336

Query: 181 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 240
           LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM
Sbjct: 337 LGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYM 396

Query: 241 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 300
           THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE
Sbjct: 397 THAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFE 456

Query: 301 KGIDRDFEPVLSMTPLN 318
           KGIDRDFEPVLSMTPLN
Sbjct: 457 KGIDRDFEPVLSMTPLN 473

The following BLAST results are available for this feature:

BLAST of Spo06200.1 vs. NCBI nr
BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
BLAST of Spo06200.1 vs. TAIR (Arabidopsis)

BLAST of Spo06200.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|372000477\|gb\|AEX65315.1\|	2.0e-185	99.0	photosystem II protein CP43, p...	[more]
gi\|910354313\|ref\|YP_009160798.1\|	7.5e-185	98.7	photosystem II CP43 chlorophyl...	[more]
gi\|746948630\|ref\|YP_009115411.1\|	7.5e-185	98.4	photosystem II 44 kDa protein ...	[more]
gi\|628819104\|gb\|AHY80537.1\|	7.5e-185	98.7	photosystem II CP43 chlorophyl...	[more]
gi\|570880013\|ref\|YP_008994286.1\|	1.3e-184	98.4	photosystem II CP43 chlorophyl...	[more]

BLAST of Spo06200.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
H2BBS7_9CARY	1.4e-185	99.0	Photosystem II CP43 reaction c...	[more]
A0A023ZR91_BETVU	5.3e-185	98.7	Photosystem II CP43 reaction c...	[more]
A0A0K0K8F0_9CARY	5.3e-185	98.7	Photosystem II CP43 reaction c...	[more]
A0A0K0K870_9CARY	5.3e-185	98.7	Photosystem II CP43 reaction c...	[more]
A0A0A8LG18_9FABA	5.3e-185	98.4	Photosystem II CP43 reaction c...	[more]

BLAST of Spo06200.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSBC_SPIOL	1.4e-186	99.0	Photosystem II CP43 reaction c...	[more]
PSBC_EUCGG	1.8e-186	98.1	Photosystem II CP43 reaction c...	[more]
PSBC_AMBTC	3.1e-186	97.1	Photosystem II CP43 reaction c...	[more]
PSBC_PANGI	4.0e-186	98.1	Photosystem II CP43 reaction c...	[more]
PSBC_MANES	5.2e-186	97.7	Photosystem II CP43 reaction c...	[more]

BLAST of Spo06200.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
ATCG00280.1	1.5e-186	97.4	photosystem II reaction center...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..313 score: 4.2E
IPR000932	Photosystem antenna protein-like	unknown	SSF161077	Photosystem II antenna protein-like	coord: 1..316 score: 4.05E
None	No IPR available	GENE3D	1.10.10.670		coord: 148..243 score: 3.0
None	No IPR available	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 1..317 score: 1.7E
None	No IPR available	PANTHER	PTHR33180:SF4	PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN	coord: 1..317 score: 1.7E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0009853	photorespiration
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016020	membrane
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016168	chlorophyll binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24708	1.00	Barchart \| Table
Spo04278	0.99	Barchart \| Table
Spo17010	0.93	Barchart \| Table
Spo10627	0.91	Barchart \| Table
Spo06201	0.91	Barchart \| Table
Spo25555	0.89	Barchart \| Table
Spo24707	0.89	Barchart \| Table
Spo02851	0.88	Barchart \| Table
Spo11904	0.88	Barchart \| Table
Spo04277	0.88	Barchart \| Table
Spo16485	0.87	Barchart \| Table
Spo16490	0.86	Barchart \| Table
Spo24717	0.85	Barchart \| Table
Spo08440	0.84	Barchart \| Table
Spo16484	0.84	Barchart \| Table
Spo26127	0.84	Barchart \| Table
Spo09413	0.83	Barchart \| Table
Spo25004	0.83	Barchart \| Table
Spo25537	0.83	Barchart \| Table
Spo01748	0.83	Barchart \| Table
Spo05875	0.82	Barchart \| Table
Spo18044	0.82	Barchart \| Table
Spo00626	0.81	Barchart \| Table
Spo22445	0.81	Barchart \| Table
Spo25538	0.81	Barchart \| Table
Spo26126	0.80	Barchart \| Table
Spo24718	0.79	Barchart \| Table
Spo17923	0.78	Barchart \| Table
Spo19560	0.78	Barchart \| Table
Spo16486	0.78	Barchart \| Table
Spo13959	0.76	Barchart \| Table
Spo24719	0.75	Barchart \| Table
Spo22572	0.74	Barchart \| Table
Spo19561	0.73	Barchart \| Table
Spo16196	0.73	Barchart \| Table
Spo13957	0.72	Barchart \| Table
Spo17924	0.72	Barchart \| Table
Spo21946	0.71	Barchart \| Table
Spo06757	0.69	Barchart \| Table
Spo17925	0.69	Barchart \| Table
Spo05412	0.69	Barchart \| Table
Spo19078	0.69	Barchart \| Table
Spo17251	0.68	Barchart \| Table
Spo19530	0.68	Barchart \| Table
Spo01972	0.67	Barchart \| Table
Spo14816	0.66	Barchart \| Table
Spo07116	0.65	Barchart \| Table
Spo16266	0.65	Barchart \| Table