Spo05998 (gene)

Overview
NameSpo05998
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S28
Locationchr1 : 48666037 .. 48668850 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAACAATATGAGCGCGTCATTTTTGGGGGTACAGCCAGAGTTGGCTGTACCCGGGTATAGCAGTTAGCAATTGGTCAATTTATGTCCAAGTAAAGTTCACATGATGGGCTAAGCCCAGAAAAGAAATCTAATAAATCGGAGCCGTCCATCTCTAGGGTTTATCAATCAATATATATTTCCCTAACTTTTCAGTTTCAATCCTTCTCTGTTATTTTCTCAGTTGCTTTCTCTTCCTCGCTAGGGTTTTCAGTTCTCTCTTCCTCGCTCTTTCCTCCCGTCGATCGAAGGTACGTAATTCTGAAATTTCTGAAATCCCGATTTCTGCGTTTCGTTCTTCATTGAGTGATTTTAGTGAATGATTTAATTTTTGATTTTAGTGAATGATTTAATTTTTGATTTTGGTGAATGATTTTGGGATTTATTGCTAAGGTTAGGACTCACTGTTTGAAATTTCGCATCTGTGATGGATTGTTCTGTTCTTTTGATGTTTATTTCTTGTTTGTGTACCAATTTTATACTGTTAGATTCATTAAGATTGTTGTTCGTATGATGCTACCACAGTACCTGTTGGCTTTCTTTCACTGATTTATGCAATTAACACAAGCAATAGAACATTAACTGTACCTTCTAATTGACTGGGCAATAGAACCAAATAAGGGGGTAAATAAGCAAAAAACCATTTCTTCTAAATTCCAACAACAAAACAAATACTCTGCCTATTTGTATAAACTACCATTAAGAAATAAAGATGAAAGAATCAGGCTAGAACAAATTGTACAGTGAGAATATGTGAAACTATATACTTTGATATGAAAAGATATGCTGTGCATAAAATCTTGAAGCTAGTCTGTTTCAACAACCCTCACCAGACAATGTAAAATTTGTTTCATCATTGTTCAATTGATCACTTTCTTCTTCTTCTTTAATTGGTAGAACTTTAATGGTTAGACCAAACTTCTTGGGCAGATAGTTTAGCTGAGACTTGAGATTTTTATAAGCTAGAACAAGATCTTTATGTTACAGAGCCAACTCTGAAGTTCATAGTTCACCCTGCTTGGCCAAATCATTATGAGGTTCCCTAATGTAAATTACTCCAGCATTCCCATTTCTGAGATTTTCGTGAAGCTTCTCACCTTTGTTCTGTAGGTGGTTTATTCTAGACAAAACATTTGTCTCTCTATCTTTAGCATACAGATGAGCATACATATGTTGACTTTTCTTTGTCAGCTCAGTAGACAGCAGTTGACTTTCTCAACTAATTGCTCATGCAACATATTTACCTCTTCTGCTTCGAATTTAAATCCAATAAGTAGTTAAGCGAACACCCTTCTGTAATCAAAGTGGGAAAAGCCTAGGAACTGTTTATATGATCCCAATATGTTATGTTCTTATTGTGAGTAGTCTGAATTATTTTCTGGTAAATGCGAAGTCCTTCCTTTGATGCAACTACCTTTTTCTTTCTCAGCTTTAAATTGAATGCTCTTAATTTCTTATTACTAATCTGATATCTACCAAGTTTTTATATGAGTGAACAATATGAGGTTTTTGCAGTGAGTTTATGTTTCGAGAGTTTATCTATCAGTGAGAAGTTTAAATTGTTGGTTTGCACCGAAGTTAAATCCATTTAAAGCCTAGGAACTCGTATATATGATCCAAATATATGACCCAAATATGTTAAATTGAATGCTCTTAATTTCTTATACTAATATGATATCTACAAGTTTTTGTATGAGTGAACAATATGAGTTTTTTCCAGTGAGTTTATGTGTTGAGAGTTTTTCTATCAGTGACAAGTTTAAATTGTTGGTTTACACTGAAGTTGAATCCATTTAAAGCCTAGGAACTGTTTATATGAAACAAATATGTTATGTTCTTACTGAGTAGTCTGAATTATTTTCTGGTAAATGCGAAGGCCTTACTTAGTTCCTTTGATGCAGCAACTATTTAAAGCATAGGAACTGTTTATATGATCCAAATATGTTATGTTCTTACTGAGTAGTCTGAATTATTTTCTGGTAAATGCGAAGGTCTTCCTTAGTTCCTTTGATGCAGCGACTACCTTTTCCTTTATCAGCTTTAAATTGATTACTAATATGATATCTACAAGTTGTTGTATGAGTGAACAATATGTTCTTTTTTTAAATTGTTGGTTTAGACTGAAGTTAAAATCCATTTCACTTGCAGAATGGAGTCTCAGATCAAGCATGCTGTTGTGATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACTCAGGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACTCTCCTCGAGTCCGAGAGAGAAGCAAGGAGACTTAGATGAAGTAGCCCCTCCCTTATATATCTGTTTTGGCTTCCATTATCGGTTTTGCCTCGTTTTGATTTTGTTATGTCAATGATTGGTTTGTCAAGACTTGTTTTAGGAGTATGATTTTTGTGGTTTAATACTGAGAATTTTGCAAGAGAACATACTGTGTTTAGACAGTTATCCAATTACTTTGATCACTTGATGTTTGTGTGGAATGCTCGGTTTTTTTACTTTGATGTTTGTGTAATGGCTGGTTGCCTTTGTTTTATGGTTCATAGAGTATCTTCTTTTCTACTTCGTATCTTGAGCTCTCTTCCTTCTCTATTAGGCTGTCTTATTGCTCAGTATAACAGTTACCTGTCTCTTCATTATTCTACCCATGCTGCCATGCCGAGTTTTGGATTATTGATATGTTCTTTATCTGTTTCTATGTATCTGGT

mRNA sequence

ATGAACAAACAATATGAGCGCGTCATTTTTGGGGTTGCTTTCTCTTCCTCGCTAGGGTTTTCAGTTCTCTCTTCCTCGCTCTTTCCTCCCGTCGATCGAAGAATGGAGTCTCAGATCAAGCATGCTGTTGTGATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACTCAGGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACTCTCCTCGAGTCCGAGAGAGAAGCAAGGAGACTTAGATGAAGTAGCCCCTCCCTTATATATCTGTTTTGGCTTCCATTATCGGTTTTGCCTCGTTTTGATTTTGTTATGTCAATGATTGGTTTGTCAAGACTTGTTTTAGGAGTATGATTTTTGTGGTTTAATACTGAGAATTTTGCAAGAGAACATACTGTGTTTAGACAGTTATCCAATTACTTTGATCACTTGATGTTTGTGTGGAATGCTCGGTTTTTTTACTTTGATGTTTGTGTAATGGCTGGTTGCCTTTGTTTTATGGTTCATAGAGTATCTTCTTTTCTACTTCGTATCTTGAGCTCTCTTCCTTCTCTATTAGGCTGTCTTATTGCTCAGTATAACAGTTACCTGTCTCTTCATTATTCTACCCATGCTGCCATGCCGAGTTTTGGATTATTGATATGTTCTTTATCTGTTTCTATGTATCTGGT

Coding sequence (CDS)

ATGAACAAACAATATGAGCGCGTCATTTTTGGGGTTGCTTTCTCTTCCTCGCTAGGGTTTTCAGTTCTCTCTTCCTCGCTCTTTCCTCCCGTCGATCGAAGAATGGAGTCTCAGATCAAGCATGCTGTTGTGATTAAGTGCATGGGCCGCACCGGATCAAGGGGGCAAGTGACTCAGGTCAGAGTTAAGTTTTTGGATGACCAAAACCGTTTCATCATGAGGAACGTCAAGGGACCCGTCAGAGAGGGAGACATTCTTACTCTCCTCGAGTCCGAGAGAGAAGCAAGGAGACTTAGATGA

Protein sequence

MNKQYERVIFGVAFSSSLGFSVLSSSLFPPVDRRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05998.1Spo05998.1mRNA


Homology
[Close]
BLAST of Spo05998.1 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 129.8 bits (325), Expect = 2.600e-27
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 16  SSLGFSVLSSSLFPPVDR--RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIM 75
           S  GF + +S L     +  RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIM
Sbjct: 70  SQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 129

Query: 76  RNVKGPVREGDILTLLESEREARRLR 100
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 130 RNVKGPVREGDILTLLESEREARRLR 155
[Close]
BLAST of Spo05998.1 vs. NCBI nr
Match: gi|731314092|ref|XP_010684187.1| (PREDICTED: 40S ribosomal protein S28 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 129.8 bits (325), Expect = 2.600e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05998.1 vs. NCBI nr
Match: gi|567874751|ref|XP_006429965.1| (hypothetical protein CICLE_v10013157mg [Citrus clementina])

HSP 1 Score: 128.3 bits (321), Expect = 7.700e-27
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 1 

		  

Query: 21  SVLSSSLFPPVDRRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPV 80
           S+L+SSL      RM+SQIKHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPV
Sbjct: 42  SLLASSL------RMDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPV 101

Query: 81  REGDILTLLESEREARRLR 100
           REGDILTLLESEREARRLR
Sbjct: 102 REGDILTLLESEREARRLR 114
[Close]
BLAST of Spo05998.1 vs. NCBI nr
Match: gi|703087605|ref|XP_010093316.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 127.9 bits (320), Expect = 1.000e-26
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

		  

Query: 33  RRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE 92
           +RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE
Sbjct: 20  KRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE 79

Query: 93  REARRLR 100
           REARRLR
Sbjct: 80  REARRLR 86
[Close]
BLAST of Spo05998.1 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 127.1 bits (318), Expect = 1.700e-26
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 

		  

Query: 34  RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 93
           RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER
Sbjct: 210 RMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESER 269

Query: 94  EARRLR 100
           EARRLR
Sbjct: 270 EARRLR 275
[Close]
BLAST of Spo05998.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBJ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_013530 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05998.1 vs. UniProtKB/TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 16  SSLGFSVLSSSLFPPVDR--RMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIM 75
           S  GF + +S L     +  RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIM
Sbjct: 70  SQTGFVIATSELSESAAKSTRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIM 129

Query: 76  RNVKGPVREGDILTLLESEREARRLR 100
           RNVKGPVREGDILTLLESEREARRLR
Sbjct: 130 RNVKGPVREGDILTLLESEREARRLR 155
[Close]
BLAST of Spo05998.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D562_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g013140 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.800e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05998.1 vs. UniProtKB/TrEMBL
Match: V4SW27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013157mg PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.300e-27
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 1 

		  

Query: 21  SVLSSSLFPPVDRRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPV 80
           S+L+SSL      RM+SQIKHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPV
Sbjct: 42  SLLASSL------RMDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPV 101

Query: 81  REGDILTLLESEREARRLR 100
           REGDILTLLESEREARRLR
Sbjct: 102 REGDILTLLESEREARRLR 114
[Close]
BLAST of Spo05998.1 vs. UniProtKB/TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.000e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

		  

Query: 33  RRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE 92
           +RMESQ+KHAVV+K MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE
Sbjct: 20  KRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESE 79

Query: 93  REARRLR 100
           REARRLR
Sbjct: 80  REARRLR 86
[Close]
BLAST of Spo05998.1 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.600e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           M++Q+K AVV+K MGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 65
[Close]
BLAST of Spo05998.1 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.100e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +RFIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05998.1 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.000e-23
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05998.1 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.000e-19
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1 

		  

Query: 31  VDRRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE 90
           +D      IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLE
Sbjct: 1   MDASRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLE 60

Query: 91  SEREARRLR 100
           SEREARRLR
Sbjct: 61  SEREARRLR 69
[Close]
BLAST of Spo05998.1 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.000e-19
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1 

		  

Query: 31  VDRRMESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLE 90
           +D      IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLE
Sbjct: 1   MDASRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLE 60

Query: 91  SEREARRLR 100
           SEREARRLR
Sbjct: 61  SEREARRLR 69
[Close]
BLAST of Spo05998.1 vs. TAIR (Arabidopsis)
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 111.3 bits (277), Expect = 3.400e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +RFIMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05998.1 vs. TAIR (Arabidopsis)
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.5 bits (275), Expect = 5.800e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 64
[Close]
BLAST of Spo05998.1 vs. TAIR (Arabidopsis)
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.5 bits (275), Expect = 5.800e-25
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 

		  

Query: 35  MESQIKHAVVIKCMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 94
           M+SQIKHAVV+K MGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 95  ARRLR 100
           ARRLR
Sbjct: 61  ARRLR 64
The following BLAST results are available for this feature:
BLAST of Spo05998.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|703132274|ref|XP_010105085.1|2.6e-2779.040S ribosomal protein S28 [Mor... [more]
gi|731314092|ref|XP_010684187.1|2.6e-27100.PREDICTED: 40S ribosomal prote... [more]
gi|567874751|ref|XP_006429965.1|7.7e-2786.0hypothetical protein CICLE_v10... [more]
gi|703087605|ref|XP_010093316.1|1.0e-2694.040S ribosomal protein S28 [Mor... [more]
gi|703110452|ref|XP_010099593.1|1.7e-2695.4Nicotinamide mononucleotide ad... [more]
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BLAST of Spo05998.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RBJ3_SPIOL1.8e-27100.Uncharacterized protein OS=Spi... [more]
W9SEX7_9ROSA1.8e-2779.040S ribosomal protein S28 OS=M... [more]
A0A0J8D562_BETVU1.8e-27100.Uncharacterized protein OS=Bet... [more]
V4SW27_9ROSI5.3e-2786.0Uncharacterized protein OS=Cit... [more]
W9R147_9ROSA7.0e-2794.040S ribosomal protein S28 OS=M... [more]
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BLAST of Spo05998.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS28_MAIZE1.6e-2487.640S ribosomal protein S28 OS=Z... [more]
RS282_ARATH6.1e-2487.640S ribosomal protein S28-2 OS... [more]
RS281_ARATH1.0e-2387.640S ribosomal protein S28-1 OS... [more]
RS28_DANRE2.0e-1971.040S ribosomal protein S28 OS=D... [more]
RS28_ICTPU2.0e-1971.040S ribosomal protein S28 OS=I... [more]
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BLAST of Spo05998.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G64140.13.4e-2587.6ribosomal protein S28[more]
AT3G10090.15.8e-2587.6Nucleic acid-binding, OB-fold-... [more]
AT5G03850.15.8e-2587.6Nucleic acid-binding, OB-fold-... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 35..80
score: 1.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 35..99
score: 20
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 31..99
score: 6.4
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 38..98
score: 1.3
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 35..99
score: 7.1
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 35..99
score: 1.11

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0016579 protein deubiquitination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0008033 tRNA processing
biological_process GO:0006412 translation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0016571 histone methylation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0009263 deoxyribonucleotide biosynthetic process
biological_process GO:0009202 deoxyribonucleoside triphosphate biosynthetic process
biological_process GO:0009186 deoxyribonucleoside diphosphate metabolic process
biological_process GO:0009553 embryo sac development
biological_process GO:0006397 mRNA processing
biological_process GO:0006606 protein import into nucleus
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000338 protein deneddylation
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0001510 RNA methylation
biological_process GO:0006396 RNA processing
biological_process GO:0006414 translational elongation
biological_process GO:0006364 rRNA processing
biological_process GO:0006457 protein folding
biological_process GO:0006144 purine nucleobase metabolic process
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0016020 membrane
cellular_component GO:0016592 mediator complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0009506 plasmodesma
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005886 plasma membrane
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo043110.82Barchart | Table
Spo192070.77Barchart | Table
Spo010860.76Barchart | Table
Spo023800.76Barchart | Table
Spo186470.74Barchart | Table
Spo138560.74Barchart | Table
Spo129940.74Barchart | Table
Spo180940.73Barchart | Table
Spo272230.73Barchart | Table
Spo095840.73Barchart | Table
Spo155830.72Barchart | Table
Spo119430.72Barchart | Table
Spo203760.72Barchart | Table
Spo256350.72Barchart | Table
Spo247030.71Barchart | Table
Spo044700.71Barchart | Table
Spo088160.71Barchart | Table
Spo259540.70Barchart | Table
Spo022180.70Barchart | Table
Spo065010.70Barchart | Table
Spo151320.70Barchart | Table
Spo114380.70Barchart | Table
Spo130430.70Barchart | Table
Spo046670.70Barchart | Table
Spo227400.70Barchart | Table
Spo058490.70Barchart | Table
Spo225200.69Barchart | Table
Spo134120.69Barchart | Table
Spo044540.69Barchart | Table
Spo231930.69Barchart | Table
Spo057830.69Barchart | Table
Spo125160.69Barchart | Table
Spo223100.69Barchart | Table
Spo070540.69Barchart | Table
Spo197560.69Barchart | Table
Spo074420.69Barchart | Table
Spo170170.69Barchart | Table
Spo201410.68Barchart | Table
Spo010010.68Barchart | Table
Spo010920.68Barchart | Table
Spo084510.68Barchart | Table
Spo157510.68Barchart | Table
Spo176380.68Barchart | Table
Spo184490.68Barchart | Table
Spo201610.68Barchart | Table
Spo224100.68Barchart | Table
Spo232200.68Barchart | Table
Spo110260.67Barchart | Table
Spo251760.67Barchart | Table
Spo095630.67Barchart | Table
Spo093530.67Barchart | Table
Spo196560.67Barchart | Table
Spo019990.67Barchart | Table
Spo061360.67Barchart | Table
Spo007800.67Barchart | Table
Spo228090.67Barchart | Table
Spo052100.67Barchart | Table
Spo234650.67Barchart | Table
Spo123040.67Barchart | Table
Spo281520.66Barchart | Table
Spo252890.66Barchart | Table
Spo233450.66Barchart | Table
Spo032310.66Barchart | Table
Spo082140.66Barchart | Table
Spo134520.66Barchart | Table
Spo060940.66Barchart | Table
Spo005250.66Barchart | Table
Spo121910.66Barchart | Table
Spo042190.66Barchart | Table
Spo070710.66Barchart | Table
Spo125980.66Barchart | Table
Spo074320.65Barchart | Table
Spo056010.65Barchart | Table
Spo143170.65Barchart | Table
Spo160970.65Barchart | Table
Spo166270.65Barchart | Table
Spo076680.65Barchart | Table
Spo145140.65Barchart | Table
Spo199700.65Barchart | Table