Spo05786 (gene)

Overview
NameSpo05786
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02279 : 52663 .. 54195 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGAGAAAAAAAAATATGGCTAAGGCTACTAATATGAGTGTTCTTGCGATATGTCTCATGATGTTCATCGTTATTGCTGACGTTGGTGAGCTATTTTTTCCATTCTTCATGTTAATAAATTTATGATTAAGAGGTATTTCCGTTTTGTGTGGGACTATATTTAAATGACCTCGATCAATCAATCTTCCTCGATCCATGTCATGTCTATGTGTTGAAGCAAGTGTTTTCAAACAATACATGTAAATGTCCCACATCGATAAAAGATAAAATAATTTATCACTTAAACATCGATAAAAGATAAAATTATTTGTCACTTAATAAGGTTAATGAGTTATTTCCCTATTGCCATATACTCCACTCGTTTCGTAATGTTCCCCACCTTTCCATTACGTAGGTACCAAATGCATTACTTTGACCAATAATAGTAAACAAGTTACTCCGTAATATTTTTACTTTTTATTATAGTTTTTAAGGTGGAACCTCCTATGTTCTTGTTAAATGGACTCTCTCTCAATTTACAGGTGTGACCCCTTGCCCCTTGGACCATTAATATGTACTTATAAAAACATCTCTATAGTGAATTCACTTTTGATGTCCCCCTGTATTAATAAAATACCATCCACACTTATAGAATAGAAAACCTAATATATGACAACCTACCCATTAGAAAAAACTCAAAGAAACATTTTAATTAATCTAGCTCCTTAAATAAATTCTTACCATTTTAATCAATCTGCTTATATGAATTCCGTTCTATCTAACTTATATATTTTCTTATACTCGCACGCATCGCTCCTTAAATAAATTTTTACCATTTTAATCAATCTGCTTATATGAGTTCCGTTCTATCTAACTTATATATTTTCTTATACTCGCACGCATCGCATAATTTTTAGGTTTAAATGATAACACAAATATGTTTTTTATATTCACACGCATCGCGTAGTAATTAATAAACTAGAAGAGCTTGACGAAGTTTATAATTAATGTTGAATTCATTGCACCATATGTCATAAAACGTACATTTTCTCATTAACAAATAAAAATATTCTCAAGTGACAAATAATTTGTAATGAAATATGCAGGAATACAAATGAGTGAAGCCCAAAGCTGTGGATGGCAGTCGACGGGTGATTGTTGTTACAGGTGCAGCCACAAGTGTTTGAACTACTGGGGAGGATCTCGATTCAGTGGTGGAAATCACTGGCGATGCCAAAACAACCAGTGCTGGTGTTGGTTTGGCAGTTGCTAAACTGCATCATACACTTAAATATTATGTCGTCTTACCTGCATCATCAACCTAATTAAGACGACTAATATACAAATTATGTAATATATTACGCGCGTGAAATTTGTGTATAAATAAAACAATAATAAGCCTGTACTACGTATAAGGTATTGTTTGTAATCCTACTACTTTTTCTCTGTGTGAAATGCGAAATAAAATGTTTGTGTGTGAATTAAATCAATCTTAATTTGGAACTTGTTTTACGCTTATGTGATAGGATATGATAGACAATTTACAACAACA

mRNA sequence

GAGAGAGAAAAAAAAATATGGCTAAGGCTACTAATATGAGTGTTCTTGCGATATGTCTCATGATGTTCATCGTTATTGCTGACGTTGGAATACAAATGAGTGAAGCCCAAAGCTGTGGATGGCAGTCGACGGGTGATTGTTGTTACAGGTGCAGCCACAAGTGTTTGAACTACTGGGGAGGATCTCGATTCAGTGGTGGAAATCACTGGCGATGCCAAAACAACCAGTGCTGGTGTTGGTTTGGCAGTTGCTAAACTGCATCATACACTTAAATATTATGTCGTCTTACCTGCATCATCAACCTAATTAAGACGACTAATATACAAATTATGTAATATATTACGCGCGTGAAATTTGTGTATAAATAAAACAATAATAAGCCTGTACTACGTATAAGGTATTGTTTGTAATCCTACTACTTTTTCTCTGTGTGAAATGCGAAATAAAATGTTTGTGTGTGAATTAAATCAATCTTAATTTGGAACTTGTTTTACGCTTATGTGATAGGATATGATAGACAATTTACAACAACA

Coding sequence (CDS)

ATGGCTAAGGCTACTAATATGAGTGTTCTTGCGATATGTCTCATGATGTTCATCGTTATTGCTGACGTTGGAATACAAATGAGTGAAGCCCAAAGCTGTGGATGGCAGTCGACGGGTGATTGTTGTTACAGGTGCAGCCACAAGTGTTTGAACTACTGGGGAGGATCTCGATTCAGTGGTGGAAATCACTGGCGATGCCAAAACAACCAGTGCTGGTGTTGGTTTGGCAGTTGCTAA

Protein sequence

MAKATNMSVLAICLMMFIVIADVGIQMSEAQSCGWQSTGDCCYRCSHKCLNYWGGSRFSGGNHWRCQNNQCWCWFGSC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05786.1Spo05786.1mRNA


Homology
[Close]
BLAST of Spo05786.1 vs. NCBI nr
Match: gi|870863271|gb|KMT14435.1| (hypothetical protein BVRB_4g072130 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-26
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 

		  

Query: 1  MAKATNMSVLAICLMMFIVIADVGIQMSEAQSCGWQSTGDCCYRCSHKCLNYWGGSRFSG 60
          MAKATN ++ A+CL+ FIVIA+ GIQM+EAQSCGW +T DCCYRC HKCLNYWGGSR S 
Sbjct: 1  MAKATNFNLFALCLL-FIVIANAGIQMTEAQSCGWANTRDCCYRCGHKCLNYWGGSRPST 60

Query: 61 GNHWRCQNNQCWCWFGSC 79
          G+HW+C+N  CWC++G C
Sbjct: 61 GDHWQCRNGNCWCYYGQC 77
[Close]
BLAST of Spo05786.1 vs. NCBI nr
Match: gi|870843667|gb|KMS96807.1| (hypothetical protein BVRB_8g199890 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.1 bits (266), Expect = 1.400e-20
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 

		  

Query: 1  MAKATNMSVLAICLMMFIVIADVGIQMSEA--QSCGWQSTGDCCYRCSHKCLNYWGGSRF 60
          MAK T   ++AICLM+F+++ +   QM+EA  QSCGW+STGDCCYRC HKCLN W GSR 
Sbjct: 1  MAKTTYFGLIAICLMVFLIV-NTEFQMAEAQRQSCGWRSTGDCCYRCGHKCLNLWRGSRH 60

Query: 61 SGGNHWRCQNNQCWCWFGSC 79
          S GN+W C+   C+C++GSC
Sbjct: 61 SNGNYWSCRRGTCFCYYGSC 79
[Close]
BLAST of Spo05786.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CL13_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072130 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.400e-27
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 

		  

Query: 1  MAKATNMSVLAICLMMFIVIADVGIQMSEAQSCGWQSTGDCCYRCSHKCLNYWGGSRFSG 60
          MAKATN ++ A+CL+ FIVIA+ GIQM+EAQSCGW +T DCCYRC HKCLNYWGGSR S 
Sbjct: 1  MAKATNFNLFALCLL-FIVIANAGIQMTEAQSCGWANTRDCCYRCGHKCLNYWGGSRPST 60

Query: 61 GNHWRCQNNQCWCWFGSC 79
          G+HW+C+N  CWC++G C
Sbjct: 61 GDHWQCRNGNCWCYYGQC 77
[Close]
BLAST of Spo05786.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BA78_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g199890 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.000e-20
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 

		  

Query: 1  MAKATNMSVLAICLMMFIVIADVGIQMSEA--QSCGWQSTGDCCYRCSHKCLNYWGGSRF 60
          MAK T   ++AICLM+F+++ +   QM+EA  QSCGW+STGDCCYRC HKCLN W GSR 
Sbjct: 1  MAKTTYFGLIAICLMVFLIV-NTEFQMAEAQRQSCGWRSTGDCCYRCGHKCLNLWRGSRH 60

Query: 61 SGGNHWRCQNNQCWCWFGSC 79
          S GN+W C+   C+C++GSC
Sbjct: 61 SNGNYWSCRRGTCFCYYGSC 79
The following BLAST results are available for this feature:
BLAST of Spo05786.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|870863271|gb|KMT14435.1|1.3e-2669.2hypothetical protein BVRB_4g07... [more]
gi|870843667|gb|KMS96807.1|1.4e-2058.7hypothetical protein BVRB_8g19... [more]
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BLAST of Spo05786.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0J8CL13_BETVU9.4e-2769.2Uncharacterized protein OS=Bet... [more]
A0A0J8BA78_BETVU1.0e-2058.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo05786.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05786.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo281400.66Barchart | Table