Spo05782 (gene)

Overview
NameSpo05782
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02279 : 19736 .. 20402 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTATACAAGGTGTGCAGTTGCTGTTTTTGTTTAAAAGAAGAAGACTGTTGTATAACAATTGGGGAATGACTGTTAGATTTTTAACTGTACACTGAATGTTTGGTTCACTTATTGTCAAATGTTCTCTTGCAGAAATTAGATATGGAAGATGGTGTAGTTAGGAATTTTTGGAGGAGAGCTATTCACTGGTGTTTCATGCGGAGCCATTTTCAGTTTTATCTAGCTTGTAGTAAGATGGTTCTGTATTTGGATCGTCATTTTTGTTTTAGGATGATTTATTTGGTTATAAAATCTGAAGTTATGGATCTAATTTTGTATGTTGAGTATACATACTGTTGGTTTTGTGACTTTTGTCTAATGGTAAAAGATTTATGGCCCAAGGTTATGAAATCTGAAGTTATGATCTAATTTGTATGTTCAGTATACATCTTGATGAGGTGATTGTGTTGAGAACACCGAAGTGTGATGTAGTTGTGGAATTGTTGATCACCTTTTAAGTAGAAGATGCGTATTAAAGCTTGTTATGGCTTCAACTATAACATGGGAGTTTCGTTCTGTATGTTTATCTTTGCAATATGCTGTTAGATGTCCAACAAGACAGACAATGAAAGAGGATATGTTAACATTGAAGATTAAACAGCAAGATTGTTAAACAAACGTC

mRNA sequence

ATGCTTTTATACAAGAAATTAGATATGGAAGATGGTGTAGTTAGGAATTTTTGGAGGAGAGCTATTCACTGGTGTTTCATGCGGAGCCATTTTCAGTTTTATCTAGCTTGTAGTAAGATGGTTCTGTATTTGGATCGTCATTTTTGTTTTAGGATGATTTATTTGGTTATAAAATCTGAAGTTATGGATCTAATTTTGTATGTTGAGTATACATACTGTTGGTTTTGTGACTTTTGTCTAATGGTAAAAGATTTATGGCCCAAGGTTATGAAATCTGAAGTTATGATCTAATTTGTATGTTCAGTATACATCTTGATGAGGTGATTGTGTTGAGAACACCGAAGTGTGATGTAGTTGTGGAATTGTTGATCACCTTTTAAGTAGAAGATGCGTATTAAAGCTTGTTATGGCTTCAACTATAACATGGGAGTTTCGTTCTGTATGTTTATCTTTGCAATATGCTGTTAGATGTCCAACAAGACAGACAATGAAAGAGGATATGTTAACATTGAAGATTAAACAGCAAGATTGTTAAACAAACGTC

Coding sequence (CDS)

ATGCTTTTATACAAGAAATTAGATATGGAAGATGGTGTAGTTAGGAATTTTTGGAGGAGAGCTATTCACTGGTGTTTCATGCGGAGCCATTTTCAGTTTTATCTAGCTTGTAGTAAGATGGTTCTGTATTTGGATCGTCATTTTTGTTTTAGGATGATTTATTTGGTTATAAAATCTGAAGTTATGGATCTAATTTTGTATGTTGAGTATACATACTGTTGGTTTTGTGACTTTTGTCTAATGGTAAAAGATTTATGGCCCAAGGTTATGAAATCTGAAGTTATGATCTAA

Protein sequence

MLLYKKLDMEDGVVRNFWRRAIHWCFMRSHFQFYLACSKMVLYLDRHFCFRMIYLVIKSEVMDLILYVEYTYCWFCDFCLMVKDLWPKVMKSEVMI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05782.1Spo05782.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo05782.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05782.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05782.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05782.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0006260 DNA replication
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0001510 RNA methylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0010050 vegetative phase change
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0034969 histone arginine methylation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009845 seed germination
biological_process GO:0009933 meristem structural organization
biological_process GO:0006560 proline metabolic process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
biological_process GO:0010162 seed dormancy process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006426 glycyl-tRNA aminoacylation
biological_process GO:0048825 cotyledon development
biological_process GO:0019915 lipid storage
biological_process GO:0051301 cell division
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0050826 response to freezing
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009909 regulation of flower development
biological_process GO:0010564 regulation of cell cycle process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0009345 glycine-tRNA ligase complex
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005850 eukaryotic translation initiation factor 2 complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0042575 DNA polymerase complex
molecular_function GO:0005488 binding
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0008469 histone-arginine N-methyltransferase activity
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0042277 peptide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004814 arginine-tRNA ligase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004820 glycine-tRNA ligase activity
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo209410.75Barchart | Table
Spo239310.74Barchart | Table
Spo011710.74Barchart | Table
Spo235130.72Barchart | Table
Spo005040.72Barchart | Table
Spo123910.71Barchart | Table
Spo056330.71Barchart | Table
Spo197610.71Barchart | Table
Spo186200.71Barchart | Table
Spo118700.71Barchart | Table
Spo175390.70Barchart | Table
Spo021810.70Barchart | Table
Spo061680.70Barchart | Table
Spo228600.70Barchart | Table
Spo000810.70Barchart | Table
Spo183930.69Barchart | Table
Spo185980.69Barchart | Table
Spo105840.69Barchart | Table
Spo219100.69Barchart | Table
Spo034130.69Barchart | Table
Spo167100.68Barchart | Table
Spo172190.68Barchart | Table
Spo130480.68Barchart | Table
Spo082850.68Barchart | Table
Spo085020.68Barchart | Table
Spo089800.68Barchart | Table
Spo154070.68Barchart | Table
Spo039640.68Barchart | Table
Spo157970.68Barchart | Table
Spo143100.67Barchart | Table
Spo032140.67Barchart | Table
Spo038840.67Barchart | Table
Spo051900.67Barchart | Table
Spo057320.67Barchart | Table
Spo076710.67Barchart | Table
Spo128740.67Barchart | Table
Spo143670.67Barchart | Table
Spo154220.67Barchart | Table
Spo180700.67Barchart | Table
Spo189370.67Barchart | Table
Spo159590.66Barchart | Table
Spo153630.66Barchart | Table
Spo040680.66Barchart | Table
Spo030590.66Barchart | Table
Spo250310.66Barchart | Table
Spo156050.66Barchart | Table
Spo118870.66Barchart | Table
Spo256150.66Barchart | Table
Spo114340.66Barchart | Table
Spo096010.66Barchart | Table
Spo087610.66Barchart | Table
Spo193450.66Barchart | Table
Spo077940.66Barchart | Table
Spo068510.66Barchart | Table
Spo216460.66Barchart | Table
Spo051370.66Barchart | Table
Spo222520.66Barchart | Table
Spo049830.66Barchart | Table
Spo228690.66Barchart | Table
Spo234280.66Barchart | Table
Spo137310.65Barchart | Table
Spo202950.65Barchart | Table
Spo163340.65Barchart | Table
Spo260740.65Barchart | Table