Spo05633 (gene)

Overview
NameSpo05633
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01725 : 25646 .. 25852 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGACGAGTTTTGTTGTTTTCTGTTGTTTAACTCAGGAACGTCAAGTTTTGAGATCATTTACATTTGCCATTTTTGCAGTTAGATGTTATATGAGATATTTAAGAAATGACAGAATTAAGCAGTTGTTTCTTTGGTTTCATTTAGTTTATTGCATGGTGTTAGTTGACGCCCTAAATGTTGTGTTCCAAGGTTTGGTGGTTTGA

mRNA sequence

ATGATGACGAGTTTTGTTGTTTTCTGTTGTTTAACTCAGGAACGTCAAGTTTTGAGATCATTTACATTTGCCATTTTTGCAGTTAGATGTTATATGAGATATTTAAGAAATGACAGAATTAAGCAGTTGTTTCTTTGGTTTCATTTAGTTTATTGCATGGTGTTAGTTGACGCCCTAAATGTTGTGTTCCAAGGTTTGGTGGTTTGA

Coding sequence (CDS)

ATGATGACGAGTTTTGTTGTTTTCTGTTGTTTAACTCAGGAACGTCAAGTTTTGAGATCATTTACATTTGCCATTTTTGCAGTTAGATGTTATATGAGATATTTAAGAAATGACAGAATTAAGCAGTTGTTTCTTTGGTTTCATTTAGTTTATTGCATGGTGTTAGTTGACGCCCTAAATGTTGTGTTCCAAGGTTTGGTGGTTTGA

Protein sequence

MMTSFVVFCCLTQERQVLRSFTFAIFAVRCYMRYLRNDRIKQLFLWFHLVYCMVLVDALNVVFQGLVV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05633.1Spo05633.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo05633.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05633.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05633.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05633.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007267 cell-cell signaling
biological_process GO:0032776 DNA methylation on cytosine
biological_process GO:0009657 plastid organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0048608 reproductive structure development
biological_process GO:0022414 reproductive process
biological_process GO:0009791 post-embryonic development
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006260 DNA replication
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0007049 cell cycle
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0048825 cotyledon development
biological_process GO:0051301 cell division
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006094 gluconeogenesis
biological_process GO:0034969 histone arginine methylation
biological_process GO:0006996 organelle organization
biological_process GO:0032259 methylation
biological_process GO:0006464 cellular protein modification process
biological_process GO:0009987 cellular process
biological_process GO:0008152 metabolic process
biological_process GO:0030488 tRNA methylation
biological_process GO:0006281 DNA repair
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0006424 glutamyl-tRNA aminoacylation
biological_process GO:0006425 glutaminyl-tRNA aminoacylation
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006400 tRNA modification
biological_process GO:0001510 RNA methylation
biological_process GO:0008618 7-methylguanosine metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006342 chromatin silencing
biological_process GO:0009658 chloroplast organization
biological_process GO:0050826 response to freezing
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0006606 protein import into nucleus
biological_process GO:0016567 protein ubiquitination
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009909 regulation of flower development
biological_process GO:0007346 regulation of mitotic cell cycle
biological_process GO:0010162 seed dormancy process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009845 seed germination
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0016233 telomere capping
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010048 vernalization response
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006412 translation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006525 arginine metabolic process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0006302 double-strand break repair
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0034968 histone lysine methylation
biological_process GO:0019915 lipid storage
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0009933 meristem structural organization
biological_process GO:0006312 mitotic recombination
biological_process GO:0006566 threonine metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006426 glycyl-tRNA aminoacylation
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
cellular_component GO:0030870 Mre11 complex
cellular_component GO:0009332 glutamate-tRNA ligase complex
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0000781 chromosome, telomeric region
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005850 eukaryotic translation initiation factor 2 complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0005829 cytosol
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009345 glycine-tRNA ligase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0000785 chromatin
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0004814 arginine-tRNA ligase activity
molecular_function GO:0004809 tRNA (guanine-N2-)-methyltransferase activity
molecular_function GO:0004819 glutamine-tRNA ligase activity
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0004820 glycine-tRNA ligase activity
molecular_function GO:0005488 binding
molecular_function GO:0000049 tRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0042393 histone binding
molecular_function GO:0008469 histone-arginine N-methyltransferase activity
molecular_function GO:0004818 glutamate-tRNA ligase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016887 ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo000810.78Barchart | Table
Spo095020.74Barchart | Table
Spo167100.74Barchart | Table
Spo209880.74Barchart | Table
Spo183930.74Barchart | Table
Spo175390.74Barchart | Table
Spo235130.73Barchart | Table
Spo184460.73Barchart | Table
Spo143670.73Barchart | Table
Spo095620.73Barchart | Table
Spo143100.73Barchart | Table
Spo209410.73Barchart | Table
Spo011710.73Barchart | Table
Spo271040.72Barchart | Table
Spo154310.72Barchart | Table
Spo061680.71Barchart | Table
Spo088680.71Barchart | Table
Spo057820.71Barchart | Table
Spo039640.71Barchart | Table
Spo185980.71Barchart | Table
Spo219100.71Barchart | Table
Spo197610.71Barchart | Table
Spo183980.70Barchart | Table
Spo021810.70Barchart | Table
Spo085020.70Barchart | Table
Spo157970.70Barchart | Table
Spo123910.70Barchart | Table
Spo154070.70Barchart | Table
Spo272990.70Barchart | Table
Spo157590.70Barchart | Table
Spo228690.70Barchart | Table
Spo128740.70Barchart | Table
Spo051370.70Barchart | Table
Spo024710.70Barchart | Table
Spo062870.70Barchart | Table
Spo065810.70Barchart | Table
Spo137290.70Barchart | Table
Spo127250.69Barchart | Table
Spo130480.69Barchart | Table
Spo131300.69Barchart | Table
Spo132040.69Barchart | Table
Spo228600.69Barchart | Table
Spo051900.69Barchart | Table
Spo068510.69Barchart | Table
Spo239310.69Barchart | Table
Spo105840.69Barchart | Table
Spo249390.68Barchart | Table
Spo178890.68Barchart | Table
Spo176170.68Barchart | Table
Spo030590.68Barchart | Table
Spo259130.68Barchart | Table
Spo022420.68Barchart | Table
Spo238660.68Barchart | Table
Spo266940.68Barchart | Table
Spo051260.68Barchart | Table
Spo231270.68Barchart | Table
Spo168710.68Barchart | Table
Spo154220.68Barchart | Table
Spo092740.68Barchart | Table
Spo178970.68Barchart | Table
Spo172190.67Barchart | Table
Spo005040.67Barchart | Table
Spo027900.67Barchart | Table
Spo049750.67Barchart | Table
Spo058670.67Barchart | Table
Spo061370.67Barchart | Table
Spo078590.67Barchart | Table
Spo087610.67Barchart | Table
Spo097380.67Barchart | Table
Spo100240.67Barchart | Table
Spo100850.67Barchart | Table
Spo106190.67Barchart | Table
Spo120590.67Barchart | Table
Spo128090.67Barchart | Table
Spo153630.67Barchart | Table
Spo165630.67Barchart | Table
Spo169040.67Barchart | Table
Spo171180.67Barchart | Table
Spo176380.67Barchart | Table
Spo216130.67Barchart | Table
Spo216460.67Barchart | Table
Spo222520.67Barchart | Table
Spo234790.67Barchart | Table
Spo238890.67Barchart | Table
Spo241530.67Barchart | Table
Spo256150.67Barchart | Table
Spo264520.67Barchart | Table
Spo250310.66Barchart | Table
Spo220690.66Barchart | Table
Spo006890.66Barchart | Table
Spo224750.66Barchart | Table
Spo043500.66Barchart | Table
Spo038840.66Barchart | Table
Spo038350.66Barchart | Table
Spo030470.66Barchart | Table
Spo021630.66Barchart | Table
Spo008850.66Barchart | Table
Spo136300.66Barchart | Table
Spo114340.66Barchart | Table
Spo020010.66Barchart | Table
Spo173670.66Barchart | Table
Spo110730.66Barchart | Table
Spo097320.66Barchart | Table
Spo096010.66Barchart | Table
Spo180700.66Barchart | Table
Spo054840.66Barchart | Table
Spo184790.66Barchart | Table
Spo184920.66Barchart | Table
Spo053590.66Barchart | Table
Spo202950.66Barchart | Table
Spo207840.66Barchart | Table
Spo208890.66Barchart | Table
Spo052080.66Barchart | Table
Spo050750.66Barchart | Table
Spo211960.66Barchart | Table
Spo250720.66Barchart | Table
Spo089800.65Barchart | Table
Spo144060.65Barchart | Table
Spo070650.65Barchart | Table
Spo067890.65Barchart | Table
Spo163940.65Barchart | Table
Spo012360.65Barchart | Table
Spo253440.65Barchart | Table
Spo047570.65Barchart | Table
Spo191300.65Barchart | Table
Spo195060.65Barchart | Table
Spo195190.65Barchart | Table
Spo053180.65Barchart | Table
Spo036270.65Barchart | Table
Spo114250.65Barchart | Table
Spo005600.65Barchart | Table
Spo246110.65Barchart | Table