Spo05296 (gene)

Overview
NameSpo05296
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II 11 kD protein
Locationchr6 : 14275051 .. 14276554 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCATTTTAATGGCATAACTAATGTAGGTACTTGAGAAATCCTGTGGTTTGTTGATTAGGATTAACTGTTGTAAATATGATACACAAGAATGAAGTACATGAGATGGGAGAGCTTAGATGTGAAATTGTAAACATATTCTTACCATTCTGTGTATGAAATGCAAAGCTTGTGTTAAAGCATTTTACGTGTTCATTTGGATGAAAGACAAAATTACTTTGGCAGGTACTCCCGCTACTCCGTACTTCCTTTCTGTGGGAACTGCAAAATGGCGTCGTGATTCAGTTGGCGGTAATTTTTTGATGCCTTCTTTTGGTTGTTCAGAGAGCTCAAGTTTCATACAAGGTTAGTCTCTTAAACTTTTATCTCACTAGGGTGGGTTGTATATTTATCCTTGATAGTGCAGTAGTGCACTCGATATAGTGTGCTTTGAATGAGATGGAGCAGTTCGTTCTACATATCAGAACTTTTAGATTTTGTATTATTGTTTGCTTGGTTTGCGTTACAAAAGAAATTAAGACAAGTCGAAGGCAAACCATTTCGATCATGAGATCTTTTTTTTTTTTTTCTTTATAAATTGGCAGTACTTTGGATCATTTTTCATAATAAATCCTTTTTTGTTTTCAAAAATTGAAATATGTGGGAGTTATTATGAGAAATTACCCAAAATCCAGAGTTACCCTTGAATAAGTGACCTTTTAGTTAATCTGGTTAGCCCTGTTTGAAAGGTAAGAGGTGAGTTTTGTGGTAAATGGGTGTTGTGTGTAGAAATTACAGGTGTCTGATTTTGGTTGGATTTCCATGTGACTTAAAAATCCAACATGTAAGTTTTGTCATCCATAAACACCAAATCTCAAAGATAAGACGATAAGGCCACGTAGCAGCAGAAGTGATTCTTAGGCTTTTTCTGCTAAGTTTGAGTATTATCTTAGTTTTCTCTCTCCCCCAAAGTTAGTTATACTGAGCCATACATAGATACCATGGCAAGTTGTAGTTTGATCACCCCTACTTCAAAGCTGAAACTCCTTTCAATCAAGTCCAAGCTCATCCCAACCACCACCTCGGCTGCCCCGTCAACATCTGCCCCTGCTGCTGCGAGTGCGTTTACCAGGCGACAGGTGAGCGTAACAGCTCTGACTGCTGCCATTCTCTCCCCTCTTCTGTCAAGCGCTGCTCATGCTGCCGCAGATGATGAATACGTGAAGGAAACAAAGGAGGTGATAAGCAAGGTTAGGAGTACACTGAATAAGAACAAAAGTGACCCAGATGTGGCTGATGCTGTAACAGAGCTTAGAGCTACTTCAAACTTCTGGGTTGCTAAGTATAGGAAAGAGAAAAATCTTCTTGGGAGGCCATCTTTCCGGGATATGTATTCTGCCCTCAATGCTGTATCCGGCCATTACATCAGTTTTGGCCCTACTTCTCCAATCCCTGCCAAGAGAAGAGCTAGGATCTTGGAGGAGATGGACAGTGTGGAGAAGGCTCTTCTTAGGGGAAAATGA

mRNA sequence

ATGCGGCATTTTAATGGCATAACTAATGTACTCCCGCTACTCCGTACTTCCTTTCTGTGGGAACTGCAAAATGGCGTCGTGATTCAGTTGGCGTTTTCTCTCTCCCCCAAAGTTAGTTATACTGAGCCATACATAGATACCATGGCAAGTTGTAGTTTGATCACCCCTACTTCAAAGCTGAAACTCCTTTCAATCAAGTCCAAGCTCATCCCAACCACCACCTCGGCTGCCCCGTCAACATCTGCCCCTGCTGCTGCGAGTGCGTTTACCAGGCGACAGGTGAGCGTAACAGCTCTGACTGCTGCCATTCTCTCCCCTCTTCTGTCAAGCGCTGCTCATGCTGCCGCAGATGATGAATACGTGAAGGAAACAAAGGAGGTGATAAGCAAGGTTAGGAGTACACTGAATAAGAACAAAAGTGACCCAGATGTGGCTGATGCTGTAACAGAGCTTAGAGCTACTTCAAACTTCTGGGTTGCTAAGTATAGGAAAGAGAAAAATCTTCTTGGGAGGCCATCTTTCCGGGATATGTATTCTGCCCTCAATGCTGTATCCGGCCATTACATCAGTTTTGGCCCTACTTCTCCAATCCCTGCCAAGAGAAGAGCTAGGATCTTGGAGGAGATGGACAGTGTGGAGAAGGCTCTTCTTAGGGGAAAATGA

Coding sequence (CDS)

ATGCGGCATTTTAATGGCATAACTAATGTACTCCCGCTACTCCGTACTTCCTTTCTGTGGGAACTGCAAAATGGCGTCGTGATTCAGTTGGCGTTTTCTCTCTCCCCCAAAGTTAGTTATACTGAGCCATACATAGATACCATGGCAAGTTGTAGTTTGATCACCCCTACTTCAAAGCTGAAACTCCTTTCAATCAAGTCCAAGCTCATCCCAACCACCACCTCGGCTGCCCCGTCAACATCTGCCCCTGCTGCTGCGAGTGCGTTTACCAGGCGACAGGTGAGCGTAACAGCTCTGACTGCTGCCATTCTCTCCCCTCTTCTGTCAAGCGCTGCTCATGCTGCCGCAGATGATGAATACGTGAAGGAAACAAAGGAGGTGATAAGCAAGGTTAGGAGTACACTGAATAAGAACAAAAGTGACCCAGATGTGGCTGATGCTGTAACAGAGCTTAGAGCTACTTCAAACTTCTGGGTTGCTAAGTATAGGAAAGAGAAAAATCTTCTTGGGAGGCCATCTTTCCGGGATATGTATTCTGCCCTCAATGCTGTATCCGGCCATTACATCAGTTTTGGCCCTACTTCTCCAATCCCTGCCAAGAGAAGAGCTAGGATCTTGGAGGAGATGGACAGTGTGGAGAAGGCTCTTCTTAGGGGAAAATGA

Protein sequence

MRHFNGITNVLPLLRTSFLWELQNGVVIQLAFSLSPKVSYTEPYIDTMASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05296.1Spo05296.1mRNA


Homology
[Close]
BLAST of Spo05296.1 vs. NCBI nr
Match: gi|902231995|gb|KNA22485.1| (hypothetical protein SOVF_033830 [Spinacia oleracea])

HSP 1 Score: 316.6 bits (810), Expect = 3.400e-83
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 107
           MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL
Sbjct: 1   MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 60

Query: 108 LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 167
           LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN
Sbjct: 61  LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 120

Query: 168 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK
Sbjct: 121 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 173
[Close]
BLAST of Spo05296.1 vs. NCBI nr
Match: gi|731348794|ref|XP_010685668.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.8 bits (608), Expect = 8.900e-60
Identity = 131/176 (74.43%), Postives = 152/176 (86.36%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLS---IKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAIL 107
           MA+ +LITPTSKLK LS   I+SKLI T  S   S +  A+ASA TRR +++TA+TAAIL
Sbjct: 1   MAASTLITPTSKLKPLSPTPIRSKLITTAASTNSSVAPSASASALTRRHLTITAVTAAIL 60

Query: 108 SPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
           SP+L  AAHA+++DEYVKETKEVI+KVR+T+ K+K+DPDVADAV ELR TSN WVAKYR+
Sbjct: 61  SPILLPAAHASSEDEYVKETKEVITKVRTTITKDKNDPDVADAVAELRTTSNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK+LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRR RILEEMDS EKALLRG+
Sbjct: 121 EKSLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRTRILEEMDSAEKALLRGR 176
[Close]
BLAST of Spo05296.1 vs. NCBI nr
Match: gi|297739253|emb|CBI28904.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 193.0 bits (489), Expect = 5.600e-46
Identity = 116/177 (65.54%), Postives = 138/177 (77.97%), Query Frame = 1 

		  

Query: 47  TMASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTA--LTAAI 106
           +MAS +LITPT+K K L  IKSKL  TTT+AAP    P       R  ++VTA  L+ A+
Sbjct: 32  SMASPTLITPTTKPKPLFLIKSKLPTTTTNAAP----PPTPQPRRRELIAVTAGVLSHAL 91

Query: 107 LSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 166
           L P+   A  AA D+EYVKET +VI+KVR+T+N +K+DPDVA AV +LR  SN WVAKYR
Sbjct: 92  LLPVAPQAV-AANDEEYVKETADVINKVRTTINMDKTDPDVATAVADLRDASNSWVAKYR 151

Query: 167 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           +EK LLGRPSFRDMYSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 152 REKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 203
[Close]
BLAST of Spo05296.1 vs. NCBI nr
Match: gi|225447221|ref|XP_002277789.1| (PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Vitis vinifera])

HSP 1 Score: 192.6 bits (488), Expect = 7.400e-46
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTA--LTAAIL 107
           MAS +LITPT+K K L  IKSKL  TTT+AAP    P       R  ++VTA  L+ A+L
Sbjct: 1   MASPTLITPTTKPKPLFLIKSKLPTTTTNAAP----PPTPQPRRRELIAVTAGVLSHALL 60

Query: 108 SPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
            P+   A  AA D+EYVKET +VI+KVR+T+N +K+DPDVA AV +LR  SN WVAKYR+
Sbjct: 61  LPVAPQAV-AANDEEYVKETADVINKVRTTINMDKTDPDVATAVADLRDASNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK LLGRPSFRDMYSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 121 EKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 171
[Close]
BLAST of Spo05296.1 vs. NCBI nr
Match: gi|590690545|ref|XP_007043537.1| (Photosystem II family protein [Theobroma cacao])

HSP 1 Score: 186.0 bits (471), Expect = 6.900e-44
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP 107
           MAS +L+TPTSKLK LL IK+K         P    P      T    + T L+ A + P
Sbjct: 1   MASPTLLTPTSKLKPLLPIKAKAASAAQPHPPPQQQPLRRQFLTLAATTTTTLSLAGILP 60

Query: 108 LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEK 167
           +  +AA AA+D+EYVKET+ VI+KVRST+N +K+DP+VA AV ELR TSN WVAKYR+EK
Sbjct: 61  V--TAAFAASDEEYVKETEVVINKVRSTINMDKNDPNVAAAVAELRETSNSWVAKYRREK 120

Query: 168 NLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
            LLGR SFRD+YSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 121 ALLGRASFRDIYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 172
[Close]
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSG4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_033830 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.400e-83
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 107
           MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL
Sbjct: 1   MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSPL 60

Query: 108 LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 167
           LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN
Sbjct: 61  LSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEKN 120

Query: 168 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK
Sbjct: 121 LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 173
[Close]
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EQ99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173090 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.200e-60
Identity = 131/176 (74.43%), Postives = 152/176 (86.36%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLS---IKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAIL 107
           MA+ +LITPTSKLK LS   I+SKLI T  S   S +  A+ASA TRR +++TA+TAAIL
Sbjct: 1   MAASTLITPTSKLKPLSPTPIRSKLITTAASTNSSVAPSASASALTRRHLTITAVTAAIL 60

Query: 108 SPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
           SP+L  AAHA+++DEYVKETKEVI+KVR+T+ K+K+DPDVADAV ELR TSN WVAKYR+
Sbjct: 61  SPILLPAAHASSEDEYVKETKEVITKVRTTITKDKNDPDVADAVAELRTTSNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK+LLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRR RILEEMDS EKALLRG+
Sbjct: 121 EKSLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRTRILEEMDSAEKALLRGR 176
[Close]
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: F6HIG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01810 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.900e-46
Identity = 116/177 (65.54%), Postives = 138/177 (77.97%), Query Frame = 1 

		  

Query: 47  TMASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTA--LTAAI 106
           +MAS +LITPT+K K L  IKSKL  TTT+AAP    P       R  ++VTA  L+ A+
Sbjct: 36  SMASPTLITPTTKPKPLFLIKSKLPTTTTNAAP----PPTPQPRRRELIAVTAGVLSHAL 95

Query: 107 LSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 166
           L P+   A  AA D+EYVKET +VI+KVR+T+N +K+DPDVA AV +LR  SN WVAKYR
Sbjct: 96  LLPVAPQAV-AANDEEYVKETADVINKVRTTINMDKTDPDVATAVADLRDASNSWVAKYR 155

Query: 167 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           +EK LLGRPSFRDMYSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 156 REKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 207
[Close]
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: A0A061EAQ4_THECC (Photosystem II family protein OS=Theobroma cacao GN=TCM_008025 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.800e-44
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLK-LLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP 107
           MAS +L+TPTSKLK LL IK+K         P    P      T    + T L+ A + P
Sbjct: 1   MASPTLLTPTSKLKPLLPIKAKAASAAQPHPPPQQQPLRRQFLTLAATTTTTLSLAGILP 60

Query: 108 LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRKEK 167
           +  +AA AA+D+EYVKET+ VI+KVRST+N +K+DP+VA AV ELR TSN WVAKYR+EK
Sbjct: 61  V--TAAFAASDEEYVKETEVVINKVRSTINMDKNDPNVAAAVAELRETSNSWVAKYRREK 120

Query: 168 NLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
            LLGR SFRD+YSALNAVSGHYISFGPT+PIPAKR+ARILEEMD+ EKALLRG+
Sbjct: 121 ALLGRASFRDIYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 172
[Close]
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Match: B9H851_POPTR (Photosystem 2 family protein OS=Populus trichocarpa GN=POPTR_0005s22780g PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.300e-44
Identity = 109/176 (61.93%), Postives = 135/176 (76.70%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLS-IKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP 107
           MAS +L+TPTS+LK LS IK K  PTT    P+       +   RR   ++  TA + SP
Sbjct: 1   MASPTLLTPTSRLKPLSPIKPKPTPTTAFPPPTPPQQQIRNHLLRRHF-LSLATAVLTSP 60

Query: 108 LLS--SAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYRK 167
           L+   + A AA+D+EYVK+T+EVI KVR+T+N +KSDP+VADAV  LR TSN WVAKYR+
Sbjct: 61  LILPVTPAFAASDEEYVKDTEEVIGKVRTTMNMDKSDPNVADAVAVLRETSNSWVAKYRR 120

Query: 168 EKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           EK LLGR SFRD+YSALNAV+GHYISFGPT+PIP+KR+ARILEEMD+ EKALLRG+
Sbjct: 121 EKALLGRASFRDIYSALNAVTGHYISFGPTAPIPSKRKARILEEMDTAEKALLRGR 175
[Close]
BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Match: PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.100e-37
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP- 107
           MAS S      K  L   K  +I ++ S       P   +   RR     A T+ +L+  
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPP---LPPPRRNHLLRRDFLSLAATSTLLTQS 60

Query: 108 ---LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 167
              L  +   AA D+EY+K+T  VISKVRSTL+  K+DP+VADAV ELR  SN WVAKYR
Sbjct: 61  IQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYR 120

Query: 168 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           KEK LLG+ SFRD+YSALNAVSGHY+SFGPT+PIPAKR+ARILEEM++ EKAL RG+
Sbjct: 121 KEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174
[Close]
BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Match: PSB27_THEEB (Photosystem II lipoprotein Psb27 OS=Thermosynechococcus elongatus (strain BP-1) GN=psb27 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.500e-9
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 1 

		  

Query: 104 LSPLLSSAAHAAAD--DEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAK 163
           +S LL+S A+        + ++T  +IS +R  +   ++DP+   A  E R   N + A 
Sbjct: 15  VSLLLTSCANVPTGLTGNFREDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFAL 74

Query: 164 YRKEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLR 219
           YR++ +L    SF  M +ALN+++GHY S+ P  P+P K +AR+ +E   VE AL R
Sbjct: 75  YRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQEFKQVELALDR 130
[Close]
BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Match: PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=psb27 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-6
Identity = 36/133 (27.07%), Postives = 70/133 (52.63%), Query Frame = 1 

		  

Query: 88  AFTRRQVS-VTALTAAILSPLLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVAD 147
           +F + Q+S + AL   +   L +  +       Y ++T  VI+ +R  ++  +  P+  +
Sbjct: 2   SFLKNQLSRLLALILVVAIGLTACDSGTGLTGNYSQDTLTVIATLREAIDLPQDAPNRQE 61

Query: 148 AVTELRATSNFWVAKYRKEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARIL 207
                R   N ++++YR++ +  G  SF  M +ALN+++G+Y S+G   PIP K + R+ 
Sbjct: 62  VQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQ 121

Query: 208 EEMDSVEKALLRG 220
            E    E+++ RG
Sbjct: 122 LEFTQAERSIERG 133
[Close]
BLAST of Spo05296.1 vs. TAIR (Arabidopsis)
Match: AT1G03600.1 (photosystem II family protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.200e-38
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 1 

		  

Query: 48  MASCSLITPTSKLKLLSIKSKLIPTTTSAAPSTSAPAAASAFTRRQVSVTALTAAILSP- 107
           MAS S      K  L   K  +I ++ S       P   +   RR     A T+ +L+  
Sbjct: 1   MASASATATLLKPNLPPHKPTIIASSVSPP---LPPPRRNHLLRRDFLSLAATSTLLTQS 60

Query: 108 ---LLSSAAHAAADDEYVKETKEVISKVRSTLNKNKSDPDVADAVTELRATSNFWVAKYR 167
              L  +   AA D+EY+K+T  VISKVRSTL+  K+DP+VADAV ELR  SN WVAKYR
Sbjct: 61  IQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYR 120

Query: 168 KEKNLLGRPSFRDMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKALLRGK 221
           KEK LLG+ SFRD+YSALNAVSGHY+SFGPT+PIPAKR+ARILEEM++ EKAL RG+
Sbjct: 121 KEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174
[Close]
BLAST of Spo05296.1 vs. TAIR (Arabidopsis)
Match: AT1G05385.1 (photosystem II 11 kDa protein-related)

HSP 1 Score: 48.5 bits (114), Expect = 6.000e-6
Identity = 26/101 (25.74%), Postives = 56/101 (55.45%), Query Frame = 1 

		  

Query: 120 YVKETKEVISKVRSTLNKNKSDPDV----ADAVTELRATSNFWVAKYRKEKNLLGRPSFR 179
           Y+K  +EV+  +R +L +N  D       ADA  E   +   +++ +R +K + G  S+ 
Sbjct: 102 YLKSAREVVKTMRESLKENPKDNAKFRRSADAAKE---SIRDYLSNWRGQKTVAGEESYV 161

Query: 180 DMYSALNAVSGHYISFGPTSPIPAKRRARILEEMDSVEKAL 217
           ++ + + A++  Y   GP++P+P + +  IL++++  E+ L
Sbjct: 162 ELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199
The following BLAST results are available for this feature:
BLAST of Spo05296.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902231995|gb|KNA22485.1|3.4e-83100.hypothetical protein SOVF_0338... [more]
gi|731348794|ref|XP_010685668.1|8.9e-6074.4PREDICTED: photosystem II repa... [more]
gi|297739253|emb|CBI28904.3|5.6e-4665.5unnamed protein product [Vitis... [more]
gi|225447221|ref|XP_002277789.1|7.4e-4665.9PREDICTED: photosystem II repa... [more]
gi|590690545|ref|XP_007043537.1|6.9e-4462.6Photosystem II family protein ... [more]
back to top
BLAST of Spo05296.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RSG4_SPIOL2.4e-83100.Uncharacterized protein OS=Spi... [more]
A0A0J8EQ99_BETVU6.2e-6074.4Uncharacterized protein OS=Bet... [more]
F6HIG7_VITVI3.9e-4665.5Putative uncharacterized prote... [more]
A0A061EAQ4_THECC4.8e-4462.6Photosystem II family protein ... [more]
B9H851_POPTR6.3e-4461.9Photosystem 2 family protein O... [more]
back to top
BLAST of Spo05296.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PB27A_ARATH2.1e-3754.2Photosystem II repair protein ... [more]
PSB27_THEEB5.5e-935.0Photosystem II lipoprotein Psb... [more]
PSB27_SYNY31.5e-627.0Photosystem II lipoprotein Psb... [more]
back to top
BLAST of Spo05296.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G03600.11.2e-3854.2photosystem II family protein[more]
AT1G05385.16.0e-625.7photosystem II 11 kDa protein-... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 91..216
score: 21
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 84..216
score: 6.1
NoneNo IPR availablePANTHERPTHR34041FAMILY NOT NAMEDcoord: 7..220
score: 1.7
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 7..220
score: 1.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009409 response to cold
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 plastid transcription
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0010206 photosystem II repair
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0015979 photosynthesis
biological_process GO:0006364 rRNA processing
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009523 photosystem II
cellular_component GO:0031977 thylakoid lumen
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression